mRNA_Ecto-sp6_S_contig9.18127.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18127.1
Unique NamemRNA_Ecto-sp6_S_contig9.18127.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18127.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 3.690e-60
Identity = 131/138 (94.93%), Postives = 133/138 (96.38%), Query Frame = 1
Query:    1 TAVTFLLLEAPSFPPHLSAXXXXXXXXXXXXXXXXXDWKAYFERAGLPAALKMLAGLCRGHAGAQGFLAERGLLERLHWMEGTSTSGEVGLLAETLLEAAAQDNALTGAEVTRLREETRAAKRKLAQARRERALKAMG 414
            TAVTFLLLEAPS PPHLSAXXXXXXXXXXXXXXX  DWKAYFERAGLPAALKMLAGLCRGHAGAQ FLAERGLLERLHWMEGTSTSGEVGLLAETLLEA AQDNALTGAE+TRLR+ETRAAKRKLAQARRERALKAMG
Sbjct: 7889 TAVTFLLLEAPSVPPHLSAXXXXXXXXXXXXXXXGGDWKAYFERAGLPAALKMLAGLCRGHAGAQSFLAERGLLERLHWMEGTSTSGEVGLLAETLLEAVAQDNALTGAEITRLRDETRAAKRKLAQARRERALKAMG 8026          
BLAST of mRNA_Ecto-sp6_S_contig9.18127.1 vs. uniprot
Match: D8LLX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX1_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 9.630e-51
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 1
Query:  115 KAYFERAGLPAALKMLAGLCRGHAGAQGFLAERGLLERLHWMEGTSTSGEVGLLAETLLEAAAQDNALTGAEVTRLREETRAAKRKLAQARRERALKAMG 414
            +AYFERAGLPAALKMLAGLCRGHAGAQGFLAERGLLERLHWMEGTSTSGEVGLLAETLLEAAAQDNALTGAEVTRLREETRAAKRKLAQARRERALKAMG
Sbjct:   99 EAYFERAGLPAALKMLAGLCRGHAGAQGFLAERGLLERLHWMEGTSTSGEVGLLAETLLEAAAQDNALTGAEVTRLREETRAAKRKLAQARRERALKAMG 198          
BLAST of mRNA_Ecto-sp6_S_contig9.18127.1 vs. uniprot
Match: A0A061RK46_9CHLO (E3 ubiquitin-protein ligase UBR4 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RK46_9CHLO)

HSP 1 Score: 61.6 bits (148), Expect = 2.340e-8
Identity = 44/103 (42.72%), Postives = 62/103 (60.19%), Query Frame = 1
Query:  112 WKAYFERAGLPAALKMLAGLCRGH-AGAQGFLAERGLLERLHWMEGTSTSGEVGLLAETLLEA-AAQDNALTGAEVTRLREETRAAKRKLAQARRERALKAMG 414
            W +  E+ G+PAAL++L  L +GH   A+  +    LL  LH +EG S+   VG LAE+LLE  +A   A   A V  LRE T+A K++ AQ +RE+ L +MG
Sbjct:  544 WASALEKPGVPAALRLLVALAKGHPVTARSLVGRSELLLLLHRLEGCSSENHVGGLAESLLETLSAAGGASAAAAVDALRESTKAEKKERAQRKREQMLASMG 646          
BLAST of mRNA_Ecto-sp6_S_contig9.18127.1 vs. uniprot
Match: A0A7J7KS30_BUGNE (Ubr4 n=2 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7KS30_BUGNE)

HSP 1 Score: 60.8 bits (146), Expect = 4.060e-8
Identity = 38/102 (37.25%), Postives = 66/102 (64.71%), Query Frame = 1
Query:  109 DWKAYFERAGLPAALKMLAGLCRGHAGAQGFLAERGLLERLHWMEGTSTSGEVGLLAETLLEAAAQDNALTGAEVTRLREETRAAKRKLAQARRERALKAMG 414
            DWK +  R  LP  L++L G+C GHA +Q  + E  ++  LH +E  S+ G++G LAE L+E   Q++++   ++ ++R +T+A K++LA A RE+ L ++G
Sbjct:   64 DWKEFVSRPVLPYVLRLLNGMCSGHAVSQVKVGEA-MIAILHKLEHMSSHGQIGSLAENLMETLCQNDSVKK-QIQQIRAQTKAEKKRLAMAVREKHLSSIG 163          
BLAST of mRNA_Ecto-sp6_S_contig9.18127.1 vs. uniprot
Match: A0A7S2LBI9_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LBI9_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 8.300e-8
Identity = 51/158 (32.28%), Postives = 72/158 (45.57%), Query Frame = 1
Query:   13 FLLLEAPSFPP------HLSAXXXXXXXXXXXXXXXXXDWKAYFERA-GLPAALKMLAGLCRGHAGAQGFLAE-RGLLERLHWMEGTS-----------------TSGEVGLLAETLLEAAAQDNALTGAEVTRLREETRAAKRKLAQARRERALKAM 411
            F++ +AP  PP      + S                   W+AY+ R  GL  AL+ML GLC  H   Q  L    G ++  HWME TS                 T  E+GL+AETLL+A  + N    +++   R+ T+  K++LA+ RR RAL  M
Sbjct:  676 FIMQDAPRLPPPWSPALNCSTIGAKRKRSKADTEALEEQWRAYYSREPGLLMALRMLIGLCTKHGSTQTALVNCDGFVQLCHWMESTSISAANDTSAAASSSSGETRNELGLVAETLLDALQEGNEYCKSKIKAARKATKDRKKELAEERRSRALVGM 833          
BLAST of mRNA_Ecto-sp6_S_contig9.18127.1 vs. uniprot
Match: UPI0003F0D18E (E3 ubiquitin-protein ligase UBR4 n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0D18E)

HSP 1 Score: 59.7 bits (143), Expect = 1.150e-7
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  112 WKAYFERAGLPAALKMLAGLCRGHAGAQGFLAERGLLERLHWMEGTSTSGEVGLLAETLLEAAAQDNALTGAEVTRLREETRAAKRKLAQARRERALKAMG 414
            WK +  +  LP  LK+L GLC GH   Q  + +   +  +H +E  S+   VG LAE L+EA  +DN     ++  +RE+T+A K++LA A R++ L A+G
Sbjct: 1407 WKDFIAKPSLPFVLKLLTGLCNGHEQTQKLVGDE-CVPAIHRLEQVSSEEGVGSLAENLMEAL-KDNPSVAKKIKEVREQTKAEKKRLAMAMRQKQLGALG 1505          
BLAST of mRNA_Ecto-sp6_S_contig9.18127.1 vs. uniprot
Match: UPI00109BA1F1 (E3 ubiquitin-protein ligase UBR4 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BA1F1)

HSP 1 Score: 58.9 bits (141), Expect = 2.190e-7
Identity = 39/101 (38.61%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  112 WKAYFERAGLPAALKMLAGLCRGHAGAQGFLAERGLLERLHWMEGTSTSGEVGLLAETLLEAAAQDNALTGAEVTRLREETRAAKRKLAQARRERALKAMG 414
            WK +  R  LP  L++L+GLC+G    Q  + E  +   +H +E  S+  +VG LAE LLEA  ++N     ++  +R +TRA K++LA A RE+ L A+G
Sbjct: 4588 WKEFLARPSLPYVLRLLSGLCKGDKKIQNIIGEASI-PVIHRLEQVSSEEKVGSLAENLLEAL-RENKEVEKKINEVRRQTRAEKKRLAMAMREKQLGALG 4686          
BLAST of mRNA_Ecto-sp6_S_contig9.18127.1 vs. uniprot
Match: A0A3M6U6D1_POCDA (UBR-type domain-containing protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6U6D1_POCDA)

HSP 1 Score: 58.5 bits (140), Expect = 2.980e-7
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  112 WKAYFERAGLPAALKMLAGLCRGHAGAQGFLAERGLLERLHWMEGTSTSGEVGLLAETLLEAAAQDNALTGAEVTRLREETRAAKRKLAQARRERALKAMG 414
            WK +  R  LP  L++L+GLC+GHA  Q  + E  +   +H +E  S+  +VG LAE L+EA  +++     +V  +R  TR  K+KLA A RE+ L A+G
Sbjct: 4576 WKEFLARPSLPYVLRLLSGLCKGHANTQVLVGETAV-PAIHRLEQVSSEEKVGSLAENLMEAL-REHPDGEKKVEEVRRSTRNEKKKLAMAMREKQLGALG 4674          
BLAST of mRNA_Ecto-sp6_S_contig9.18127.1 vs. uniprot
Match: UPI000F556680 (E3 ubiquitin-protein ligase UBR4-like isoform X2 n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F556680)

HSP 1 Score: 58.5 bits (140), Expect = 2.980e-7
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  112 WKAYFERAGLPAALKMLAGLCRGHAGAQGFLAERGLLERLHWMEGTSTSGEVGLLAETLLEAAAQDNALTGAEVTRLREETRAAKRKLAQARRERALKAMG 414
            WK +  R  LP  L++L+GLC+GHA  Q  + E  +   +H +E  S+  +VG LAE L+EA  +++     +V  +R  TR  K+KLA A RE+ L A+G
Sbjct: 4720 WKEFLARPSLPYVLRLLSGLCKGHANTQVLVGETAV-PAIHRLEQVSSEEKVGSLAENLMEAL-REHPDGEKKVEEVRRSTRNEKKKLAMAMREKQLGALG 4818          
BLAST of mRNA_Ecto-sp6_S_contig9.18127.1 vs. uniprot
Match: A0A6L5D6S9_9INSE (UBR-type domain-containing protein n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5D6S9_9INSE)

HSP 1 Score: 57.4 bits (137), Expect = 7.470e-7
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 1
Query:  109 DWKAYFERAGLPAALKMLAGLCRGHAGAQGFLAERGLLERLHWMEGTSTSGEVGLLAETLLEAAAQDNALTGAEVTRLREETRAAKRKLAQARRERALKAMG 414
            DWK +  R  L   L+ LAGL   H   Q  +A    +  LH +E  S+   VG L+E LLEA  + N    A+V ++R++TRA K++LA A RE+ L A+G
Sbjct: 2948 DWKDFISRPSLKVILRFLAGLATEHEPTQLEVATSECIAVLHRLEQVSSQEHVGSLSENLLEAL-RTNPAVAAKVEQVRQQTRAEKKRLAMAMREKQLGALG 3048          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J981_9PHAE3.690e-6094.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLX1_ECTSI9.630e-5199.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A061RK46_9CHLO2.340e-842.72E3 ubiquitin-protein ligase UBR4 n=1 Tax=Tetraselm... [more]
A0A7J7KS30_BUGNE4.060e-837.25Ubr4 n=2 Tax=Bugula neritina TaxID=10212 RepID=A0A... [more]
A0A7S2LBI9_9STRA8.300e-832.28Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
UPI0003F0D18E1.150e-737.62E3 ubiquitin-protein ligase UBR4 n=1 Tax=Saccoglos... [more]
UPI00109BA1F12.190e-738.61E3 ubiquitin-protein ligase UBR4 n=1 Tax=Exaiptasi... [more]
A0A3M6U6D1_POCDA2.980e-739.60UBR-type domain-containing protein n=1 Tax=Pocillo... [more]
UPI000F5566802.980e-739.60E3 ubiquitin-protein ligase UBR4-like isoform X2 n... [more]
A0A6L5D6S9_9INSE7.470e-740.20UBR-type domain-containing protein n=1 Tax=Ephemer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1169743..1170467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score183.3
Seed ortholog evalue7.5e-44
Seed eggNOG ortholog2880.D8LLX1
Model size416
KEGG koko:K10691
KEGG Pathwayko05165,ko05203,map05165,map05203
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.perineurial glial growth
EggNOG OGsKOG1776@1,KOG1776@2759
EC2.3.2.27
Cds size414
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350528.658518-CDS-Ecto-sp6_S_contig9:1169742..11698921682350528.658518-CDS-Ecto-sp6_S_contig9:1169742..1169892Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1169743..1169892 -
1682350528.6805716-CDS-Ecto-sp6_S_contig9:1170203..11704671682350528.6805716-CDS-Ecto-sp6_S_contig9:1170203..1170467Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1170204..1170467 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18127.1prot_Ecto-sp6_S_contig9.18127.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1169743..1170467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18127.1

>prot_Ecto-sp6_S_contig9.18127.1 ID=prot_Ecto-sp6_S_contig9.18127.1|Name=mRNA_Ecto-sp6_S_contig9.18127.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=138bp
TAVTFLLLEAPSFPPHLSAAAPPPSLSGGSSGGGGGDWKAYFERAGLPAA
LKMLAGLCRGHAGAQGFLAERGLLERLHWMEGTSTSGEVGLLAETLLEAA
AQDNALTGAEVTRLREETRAAKRKLAQARRERALKAMG
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mRNA from alignment at Ecto-sp6_S_contig9:1169743..1170467-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18127.1 ID=mRNA_Ecto-sp6_S_contig9.18127.1|Name=mRNA_Ecto-sp6_S_contig9.18127.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=725bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1169743..1170467- (Ectocarpus species6 EcLAC_371)
ACTGCGGTGACGTTCTTGCTCCTCGAGGCACCGTCGTTCCCCCCCCACCT CTCGGCAGCCGCCCCTCCGCCTTCTTTGTCGGGGGGTAGCAGCGGGGGCG GCGGGGGCGATTGGAAGGCGTACTTCGAGCGGGCCGGGCTTCCGGCGGCG TTGAAGATGCTGGCCGGTCTGTGCAGGGGCCACGCCGGCGCGCAGGGCTT CCTGGCGGAGCGCGGCCTGCTGGAGCGGCTCCACTGGATGGAGGGGACAT CGACCTCGGGGGAGGTGAGTAGTCATGAAAGTTTCACTTACAACAAGTCG TTACCGCTGACAGCTGACCAGCCCAAGCAATGTTTTTCAGCAGAAGACAT GGTTGCGTGCACGCTAATAGTATACTATCACATTCAGGGGGGTGTTACCT ACCGTATCTGTTAAACCGGCCGGCTGTATTGGAATGCTATGTTGACATGC TGCCGCTGTTTCTTTGTGGTGTTTCTCGATTGTCACTCCCATCCAACGGC ACCCCCACCGAACGGCCCCCCCTCCCACCTCCCTTTGGTGCCATTCAACG GACACCCCTTCCTTACGACCAAAAGGTCGGTCTTTTGGCGGAAACCTTGT TGGAGGCGGCGGCCCAAGACAACGCTCTCACCGGCGCCGAGGTCACGCGC CTGAGGGAAGAGACTCGCGCGGCCAAGCGCAAGCTGGCGCAGGCCCGGAG GGAGCGAGCGCTGAAGGCCATGGGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1169743..1170467-

>mRNA_Ecto-sp6_S_contig9.18127.1 ID=mRNA_Ecto-sp6_S_contig9.18127.1|Name=mRNA_Ecto-sp6_S_contig9.18127.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1169743..1170467- (Ectocarpus species6 EcLAC_371)
ACTGCGGTGACGTTCTTGCTCCTCGAGGCACCGTCGTTCCCCCCCCACCT
CTCGGCAGCCGCCCCTCCGCCTTCTTTGTCGGGGGGTAGCAGCGGGGGCG
GCGGGGGCGATTGGAAGGCGTACTTCGAGCGGGCCGGGCTTCCGGCGGCG
TTGAAGATGCTGGCCGGTCTGTGCAGGGGCCACGCCGGCGCGCAGGGCTT
CCTGGCGGAGCGCGGCCTGCTGGAGCGGCTCCACTGGATGGAGGGGACAT
CGACCTCGGGGGAGGTCGGTCTTTTGGCGGAAACCTTGTTGGAGGCGGCG
GCCCAAGACAACGCTCTCACCGGCGCCGAGGTCACGCGCCTGAGGGAAGA
GACTCGCGCGGCCAAGCGCAAGCTGGCGCAGGCCCGGAGGGAGCGAGCGC
TGAAGGCCATGGGG
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