mRNA_Ecto-sp6_S_contig9.18109.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18109.1
Unique NamemRNA_Ecto-sp6_S_contig9.18109.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1041335..1043451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size453
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-14_002140.1
Cds size348
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350514.1195738-UTR-Ecto-sp6_S_contig9:1041334..10414391682350514.1195738-UTR-Ecto-sp6_S_contig9:1041334..1041439Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1041335..1041439 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350514.1302195-CDS-Ecto-sp6_S_contig9:1041439..10415741682350514.1302195-CDS-Ecto-sp6_S_contig9:1041439..1041574Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1041440..1041574 -
1682350514.1398926-CDS-Ecto-sp6_S_contig9:1043141..10431901682350514.1398926-CDS-Ecto-sp6_S_contig9:1043141..1043190Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1043142..1043190 -
1682350514.1494615-CDS-Ecto-sp6_S_contig9:1043287..10434511682350514.1494615-CDS-Ecto-sp6_S_contig9:1043287..1043451Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1043288..1043451 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18109.1prot_Ecto-sp6_S_contig9.18109.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1041440..1043451 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18109.1

>prot_Ecto-sp6_S_contig9.18109.1 ID=prot_Ecto-sp6_S_contig9.18109.1|Name=mRNA_Ecto-sp6_S_contig9.18109.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=116bp
MAPYTTDNAQKKKHKSDEKLKQQEQQAEAAAAAVVLNLQAGEEITGLTRD
EMASVRGGSRRALREAVHTPKVGSVPTSRYPTYGNGNSSWARRARRRMSG
VGTFPHRLLSRGGSK*
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mRNA from alignment at Ecto-sp6_S_contig9:1041335..1043451-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18109.1 ID=mRNA_Ecto-sp6_S_contig9.18109.1|Name=mRNA_Ecto-sp6_S_contig9.18109.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2117bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1041335..1043451- (Ectocarpus species6 EcLAC_371)
ATGGCCCCCTACACAACAGACAACGCTCAGAAAAAGAAGCACAAGAGCGA
CGAAAAGTTGAAGCAGCAGGAGCAGCAGGCGGAGGCGGCGGCGGCGGCCG
TGGTCCTCAACCTGCAGGCAGGCGAGGAGATCACGGGGCTGACCCGGGAC
GAGATGGCCTCCGTGTGCGACAAGCTCGAGCAGTTCGCGAAGAAGAACCC
GCACCGCGTGGAGGAGCACGCCTCTGGGGGCGGCGGCGGCGGCGGCGGCG
GCAGCGGCCAGGAGAGGCGGAAGCAGACGAGCTCTGCGTGAAGCTGTGCA
CACACCAAAGGTGAGGGAGAGCAGGGATTACCTGTTTGCTTGTGTGTAAA
GGTCGGGTCTGCACATAGGCCGGCGGGAATGAGCGCGCAGCACATGGAAG
ATGTCTTGTCAAGGTGCTCTCGGCGAACTCAGGAGCATTTCCAATAGCAG
CAGGAGCACAGAGTAGCGATCTTTTTTTCGTCTAGTTTCCGACATTCAGC
AAGTTTGGATATGAAGGTCCGCGAAGAACTGCTTCGGGAGTTTCTCCGCC
CCTGTTGGACCTATATCCATGAGCACTTGAAGTATCTCTTGTAAGTGAGG
CTAGGCCATTGTGAGAATGATGCGCAGCCATCTTGCAATGCTCTCCCTCG
AGTCTTGATTTAACCCGGAGGCCTCGAACAAATCCCAGCCCAGCAGATGT
GGTGTTGTATGTACTTTTTGTGTGTGTATTCCGCAGAGGACCATCTACAG
CAGTCAGTGTGTATGCACACTCTATTCAACCTTCGTTGTATTTGTAGCAT
GGGACGGAACCCCGTTGCCTCCGACGTTCACTTGTGGCTACAAATGGCAT
CTGCTGTGCGAACCAAGGAACGTGCTGACGGCGGCAAGTAAAGTGTAGGT
GAAACCGTTTCCATTCTGCGCAAGCGAGGAACGACGTCGTTGACCATTAC
ATCATGTGTCATGTGTCCACTTCGAGGCGCCCCCCGCTCGCTGTGGACCA
TGCGGCTTATACTGCATCTAGAACTGCGCTTTGCCTGTACATGCCCGGAT
GCATCCCAACTGGTATTCGATGCATAGGTGCCCACATTGGACAGCAATGT
GTGGCGGGGAGAATCTTGTTTAAATGATAGGCTTGTCTACCCCCCTCCAA
TCCTCGAACAGCTACATCGAAGTTTCCGTGGAGTCTAGAAAGATTGGAAC
GACGAATTTTTGCGCGCGCGTTTGCAATCGTACGACAGCTGTTGCTACTA
TACAAGTAATACAGTAGGAACACTTGCAAGCATTTTATAAAGCTGGCATG
CAACATGCAACGCTGCTGCCTGGAGAACGCTACTGCTACAGCTATGTAGC
AGCACAGATACATGCCCGGGAAGAGAATACGAGCGACATATCGCTCTTTT
CCGACAACGTTCCCCCGTCTCCGAGGGTTGTTCTTACAATAGTTGAAGTT
CTTCGTTTTTTAGAAAGTAAACATAATCTCACAGAAAGACTACCCGTTCG
AGATATAACCTCAGTCGAAAGGGATGTGCTGAAGTCTCTTCAGTGAGCAG
AGGGAAACCGGCTGGAAACTGGGCTTATTTTCAGTTTGTCCAAGCCTATA
TATACACTTTGGATTCTCTTCGAATCGCCCCTGTTTGATAGTAGTTTTTC
ATGTAGCGGCCACGGCTTCGCGAAGTTGCGTCGGCGCAAGGATGTAACAA
TCAGTTCCCTCCGCTGTTGTTTACGAAATTGCTGCAAGACAAAAAAAGTG
AGGGAAAAAACGAAGACCGCAAAGTGCCGCCAAGATAACCCTTTGCCCAC
ACACAACAGATTTTTGTGTTTGATGTTGTTGCGCTCGCTCACGTCCCTTT
CCTCCGCCGCTCTTCCGTCCCATTCAGGTCGGTTCTGTGCCCACCAGCCG
ATACCCTACCTACGGCAACGGCAACAGCAGTTGGGCGAGAAGAGCGAGGC
GACGCATGTCGGGGGTGGGCACATTCCCACACCGATTGCTTTCCAGAGGG
GGGAGTAAATAGATGGTCATTCGGAATAAGAGCCAAAAAAATACATGAAA
CGGAAGGAAGCGCCCCCGGCGCGGAAGCCGGAGCGTGTTGCGCAGAAGAT
GACGGCCTTGCCTCAGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1041335..1043451-

>mRNA_Ecto-sp6_S_contig9.18109.1 ID=mRNA_Ecto-sp6_S_contig9.18109.1|Name=mRNA_Ecto-sp6_S_contig9.18109.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1041335..1043451- (Ectocarpus species6 EcLAC_371)
ATGGCCCCCTACACAACAGACAACGCTCAGAAAAAGAAGCACAAGAGCGA
CGAAAAGTTGAAGCAGCAGGAGCAGCAGGCGGAGGCGGCGGCGGCGGCCG
TGGTCCTCAACCTGCAGGCAGGCGAGGAGATCACGGGGCTGACCCGGGAC
GAGATGGCCTCCGTGAGAGGCGGAAGCAGACGAGCTCTGCGTGAAGCTGT
GCACACACCAAAGGTCGGTTCTGTGCCCACCAGCCGATACCCTACCTACG
GCAACGGCAACAGCAGTTGGGCGAGAAGAGCGAGGCGACGCATGTCGGGG
GTGGGCACATTCCCACACCGATTGCTTTCCAGAGGGGGGAGTAAATAG
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