mRNA_Ecto-sp6_S_contig9.18104.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18104.1
Unique NamemRNA_Ecto-sp6_S_contig9.18104.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18104.1 vs. uniprot
Match: D8LLZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ0_ECTSI)

HSP 1 Score: 425 bits (1092), Expect = 5.070e-149
Identity = 239/254 (94.09%), Postives = 243/254 (95.67%), Query Frame = 1 
Query:    1 QARGSSCSSSKAMRLLGLSKLPPDASRAEHLTLIRQHRSVRKERVKSSSPASLKRGGSYSRVMSSXXXXXXXXX-EASFSSRNPGEADGTSVPPSAEGEKLTIQQPQYPDREEGEEVATPHHHHQPSEWLDMRESSLKLTPTDVDEQFLRSIESLMNQFPAPPTRNHATAAVTDLTSPSTAALGRFKGDGRRGLQMPRPSSQRRGVSGA---EHMFHSGQNPMYQHHTESRRGGVVRAIDSPMRIRYAKDEFSL 750
            +A+GSS SSSKAMRLLGLSKLPPDASR EHLTLIRQHRSVRKERVKSSSPASLKRGGSYSRVMSSXXXXXXXXX EASFSSRNPGEADGTSVP SAEG KLTIQQPQYPDREEGEEVAT HHHHQPSEWLDMRESSLKLTPTDVDEQFLRS+ESLMNQFPAPPTR+HATAAVTDLTSPSTAALGRFKGDGRRGLQMPRPSSQRRGVSGA   EHMFHSGQNPMYQHH ESRRGGVVR IDSPMRIRYAKDEFSL
Sbjct:    7 EAKGSSGSSSKAMRLLGLSKLPPDASRTEHLTLIRQHRSVRKERVKSSSPASLKRGGSYSRVMSSXXXXXXXXXXEASFSSRNPGEADGTSVPSSAEGGKLTIQQPQYPDREEGEEVATRHHHHQPSEWLDMRESSLKLTPTDVDEQFLRSVESLMNQFPAPPTRDHATAAVTDLTSPSTAALGRFKGDGRRGLQMPRPSSQRRGVSGAGGAEHMFHSGQNPMYQHHMESRRGGVVREIDSPMRIRYAKDEFSL 260
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BLAST of mRNA_Ecto-sp6_S_contig9.18104.1 vs. uniprot
Match: A0A6H5J8C9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8C9_9PHAE)

HSP 1 Score: 315 bits (808), Expect = 5.060e-106
Identity = 192/246 (78.05%), Postives = 199/246 (80.89%), Query Frame = 1 
Query:   37 MRLLGLSKLPPDASRAEHLTLIRQHRSVRKERVKSSSPASLKRGGSYSRVMSSXXXXXXXXXEASFSSRNPGEADGTSVPPSAEGEKLTIQQPQYPDREEGEEVATPHHH-----HQPSEWLDMRESSLKLTPTDVDEQFLRSIESLMNQFPAPPTRNHATAAVTDLTSPSTAALGRFKGDGRRGLQMPRPSSQRRGVSGA---EHMFHSGQNPMYQHHTESRRGGVVRAIDSPMRIRYAKDEFSL 750
            MRLLGLSKLPPDASR+EHL LIRQHRSVRKERVKSSSPASLKRGGSYSRVMS XXXXXXXXXEASF SRNPGEAD  SVPPSAEGEKLTIQ                        HQPSEWLDMRESSLKLTPTD+DE+FL SIESLMNQFPAPPTR+HA AAV D+TSPSTAALGRFKGDGRRGL M RPS+Q RGVSGA   E M HS QNP+YQ   ESRRGG VR IDSPMRIRY KDEFSL
Sbjct:    1 MRLLGLSKLPPDASRSEHLALIRQHRSVRKERVKSSSPASLKRGGSYSRVMS-XXXXXXXXXEASFGSRNPGEADSASVPPSAEGEKLTIQXXXXXXXXXXXXXXXXXXXXXXXDHQPSEWLDMRESSLKLTPTDMDERFLGSIESLMNQFPAPPTRDHAAAAVVDVTSPSTAALGRFKGDGRRGLPMSRPSTQWRGVSGADGAEDMSHSWQNPIYQQQMESRRGGAVREIDSPMRIRYPKDEFSL 245
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLZ0_ECTSI5.070e-14994.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J8C9_9PHAE5.060e-10678.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1006475..1007227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size753
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_002190.1
Cds size753
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350526.7314606-CDS-Ecto-sp6_S_contig9:1006474..10072271682350526.7314606-CDS-Ecto-sp6_S_contig9:1006474..1007227Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1006475..1007227 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18104.1prot_Ecto-sp6_S_contig9.18104.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1006475..1007227 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18104.1

>prot_Ecto-sp6_S_contig9.18104.1 ID=prot_Ecto-sp6_S_contig9.18104.1|Name=mRNA_Ecto-sp6_S_contig9.18104.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=251bp
QARGSSCSSSKAMRLLGLSKLPPDASRAEHLTLIRQHRSVRKERVKSSSP
ASLKRGGSYSRVMSSGGGGGGGGGEASFSSRNPGEADGTSVPPSAEGEKL
TIQQPQYPDREEGEEVATPHHHHQPSEWLDMRESSLKLTPTDVDEQFLRS
IESLMNQFPAPPTRNHATAAVTDLTSPSTAALGRFKGDGRRGLQMPRPSS
QRRGVSGAEHMFHSGQNPMYQHHTESRRGGVVRAIDSPMRIRYAKDEFSL
*
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mRNA from alignment at Ecto-sp6_S_contig9:1006475..1007227+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18104.1 ID=mRNA_Ecto-sp6_S_contig9.18104.1|Name=mRNA_Ecto-sp6_S_contig9.18104.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=753bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1006475..1007227+ (Ectocarpus species6 EcLAC_371)
CAGGCTAGAGGGTCCTCGTGTTCCTCTTCGAAGGCGATGAGGCTCCTGGG
TCTGTCCAAGCTGCCGCCCGACGCGTCTCGCGCGGAGCACCTGACCCTCA
TCCGGCAGCACCGGTCGGTGCGCAAGGAGCGCGTCAAGTCGTCCTCGCCT
GCGTCCCTGAAGCGAGGCGGCTCGTACTCGCGGGTGATGTCTTCCGGCGG
CGGCGGCGGCGGCGGCGGCGGCGAGGCCAGCTTTAGCAGCAGGAACCCGG
GGGAAGCAGACGGTACCTCCGTTCCGCCGTCGGCAGAGGGAGAGAAGTTG
ACGATTCAGCAGCCGCAGTACCCAGATCGGGAGGAAGGGGAGGAAGTCGC
GACGCCACACCACCACCACCAACCCTCCGAGTGGCTGGACATGCGGGAGT
CTTCGCTCAAGCTCACGCCGACCGACGTGGACGAGCAGTTCCTCAGGAGC
ATCGAGAGCCTCATGAACCAGTTCCCGGCCCCGCCGACCCGCAACCACGC
CACCGCGGCCGTGACGGACTTGACCTCCCCGTCGACCGCGGCGCTTGGTA
GGTTCAAGGGAGACGGCCGCCGCGGGCTTCAAATGCCCAGGCCAAGCAGC
CAGCGGAGGGGCGTGAGCGGCGCGGAACACATGTTCCATTCTGGGCAGAA
CCCGATGTACCAGCACCACACGGAGAGCAGGCGGGGGGGCGTCGTGCGCG
CGATAGACTCGCCGATGCGGATTCGGTATGCCAAGGATGAGTTCTCCTTA
TAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1006475..1007227+

>mRNA_Ecto-sp6_S_contig9.18104.1 ID=mRNA_Ecto-sp6_S_contig9.18104.1|Name=mRNA_Ecto-sp6_S_contig9.18104.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=753bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1006475..1007227+ (Ectocarpus species6 EcLAC_371)
CAGGCTAGAGGGTCCTCGTGTTCCTCTTCGAAGGCGATGAGGCTCCTGGG
TCTGTCCAAGCTGCCGCCCGACGCGTCTCGCGCGGAGCACCTGACCCTCA
TCCGGCAGCACCGGTCGGTGCGCAAGGAGCGCGTCAAGTCGTCCTCGCCT
GCGTCCCTGAAGCGAGGCGGCTCGTACTCGCGGGTGATGTCTTCCGGCGG
CGGCGGCGGCGGCGGCGGCGGCGAGGCCAGCTTTAGCAGCAGGAACCCGG
GGGAAGCAGACGGTACCTCCGTTCCGCCGTCGGCAGAGGGAGAGAAGTTG
ACGATTCAGCAGCCGCAGTACCCAGATCGGGAGGAAGGGGAGGAAGTCGC
GACGCCACACCACCACCACCAACCCTCCGAGTGGCTGGACATGCGGGAGT
CTTCGCTCAAGCTCACGCCGACCGACGTGGACGAGCAGTTCCTCAGGAGC
ATCGAGAGCCTCATGAACCAGTTCCCGGCCCCGCCGACCCGCAACCACGC
CACCGCGGCCGTGACGGACTTGACCTCCCCGTCGACCGCGGCGCTTGGTA
GGTTCAAGGGAGACGGCCGCCGCGGGCTTCAAATGCCCAGGCCAAGCAGC
CAGCGGAGGGGCGTGAGCGGCGCGGAACACATGTTCCATTCTGGGCAGAA
CCCGATGTACCAGCACCACACGGAGAGCAGGCGGGGGGGCGTCGTGCGCG
CGATAGACTCGCCGATGCGGATTCGGTATGCCAAGGATGAGTTCTCCTTA
TAG
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