mRNA_Ecto-sp6_S_contig9.18098.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18098.1
Unique NamemRNA_Ecto-sp6_S_contig9.18098.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:963893..964370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size463
Hectar predicted targeting categoryother localisation
Exons2
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350514.0614393-CDS-Ecto-sp6_S_contig9:963892..9639311682350514.0614393-CDS-Ecto-sp6_S_contig9:963892..963931Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 963893..963931 -
1682350514.0714288-CDS-Ecto-sp6_S_contig9:963946..9642311682350514.0714288-CDS-Ecto-sp6_S_contig9:963946..964231Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 963947..964231 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350514.0842578-UTR-Ecto-sp6_S_contig9:964231..9643701682350514.0842578-UTR-Ecto-sp6_S_contig9:964231..964370Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 964232..964370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18098.1prot_Ecto-sp6_S_contig9.18098.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 963893..964231 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18098.1

>prot_Ecto-sp6_S_contig9.18098.1 ID=prot_Ecto-sp6_S_contig9.18098.1|Name=mRNA_Ecto-sp6_S_contig9.18098.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=108bp
MYVMRLDGGRRFLDLDETRRHSEMSEKRVRIDGRERETERSRSRARVQSA
RDDPGERTNTPQNLRFFRFVNPRVCKTFGVLLPGERRLPGLACWILECCS
AAGGQTIR
back to top

mRNA from alignment at Ecto-sp6_S_contig9:963893..964370-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18098.1 ID=mRNA_Ecto-sp6_S_contig9.18098.1|Name=mRNA_Ecto-sp6_S_contig9.18098.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=478bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:963893..964370- (Ectocarpus species6 EcLAC_371)
TGTCTTGCTACCAAGTAAACTACCAGCGGTTTGGTGGCACCTTTTGATTT
CATTTTCCGGCTGATGTGCTCCCCCCCGGGTGAGTGCGATTTGTTGTGCC
GGGCAGCAGTGCAGGAGTTTCGTGTTGTAGGAGGGGGTTATGTATGTGAT
GAGACTGGATGGGGGACGGAGATTCTTGGACTTGGATGAGACAAGAAGAC
ACTCAGAGATGAGCGAGAAGAGGGTTCGCATCGATGGGAGGGAGAGGGAG
ACAGAGAGAAGTCGCTCGCGCGCGCGCGTACAAAGCGCGAGAGACGACCC
TGGGGAGAGAACCAACACACCGCAAAACTTGCGGTTTTTCCGTTTTGTGA
ACCCGAGGGTATGTAAGACATTTGGGGTGCTTCTCCCTGGCGAGCGGCGC
CTTCCCGGGCTCGCCTGCTGGATTGCTGATTGGTTGGAGTTGGAGTGCTG
CTCAGCAGCCGGCGGGCAGACCATCCGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:963893..964370-

>mRNA_Ecto-sp6_S_contig9.18098.1 ID=mRNA_Ecto-sp6_S_contig9.18098.1|Name=mRNA_Ecto-sp6_S_contig9.18098.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:963893..964370- (Ectocarpus species6 EcLAC_371)
ATGTATGTGATGAGACTGGATGGGGGACGGAGATTCTTGGACTTGGATGA
GACAAGAAGACACTCAGAGATGAGCGAGAAGAGGGTTCGCATCGATGGGA
GGGAGAGGGAGACAGAGAGAAGTCGCTCGCGCGCGCGCGTACAAAGCGCG
AGAGACGACCCTGGGGAGAGAACCAACACACCGCAAAACTTGCGGTTTTT
CCGTTTTGTGAACCCGAGGGTATGTAAGACATTTGGGGTGCTTCTCCCTG
GCGAGCGGCGCCTTCCCGGGCTCGCCTGCTGGATTTTGGAGTGCTGCTCA
GCAGCCGGCGGGCAGACCATCCGT
back to top