mRNA_Ecto-sp6_S_contig9.18097.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18097.1
Unique NamemRNA_Ecto-sp6_S_contig9.18097.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:961997..962477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size482
Hectar predicted targeting categoryother localisation
Exons1
Cds size435
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350514.9139411-UTR-Ecto-sp6_S_contig9:961996..9620421682350514.9139411-UTR-Ecto-sp6_S_contig9:961996..962042Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 961997..962042 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350514.9227335-CDS-Ecto-sp6_S_contig9:962042..9624771682350514.9227335-CDS-Ecto-sp6_S_contig9:962042..962477Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 962043..962477 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18097.1prot_Ecto-sp6_S_contig9.18097.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 962043..962477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18097.1

>prot_Ecto-sp6_S_contig9.18097.1 ID=prot_Ecto-sp6_S_contig9.18097.1|Name=mRNA_Ecto-sp6_S_contig9.18097.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=145bp
MEAPLRRLQQDLMLLEAYQTIVVSENEDLNPAPTKTVHQVRLQPVFPARS
EPWAKVRGLVRSGGASMHRYLNYFRSQTQKGTLFAIILAPDRCVRVTTER
SSKQRGTRLFVIIRTELTLFLLHAQRSQLEKTDDTHARIYKQRTV
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mRNA from alignment at Ecto-sp6_S_contig9:961997..962477+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18097.1 ID=mRNA_Ecto-sp6_S_contig9.18097.1|Name=mRNA_Ecto-sp6_S_contig9.18097.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=481bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:961997..962477+ (Ectocarpus species6 EcLAC_371)
CCCCCCCACGACCAAGATTGCCGCGTAGCCCAGGGGTGTTCCGACGATGG
AGGCCCCCTTGCGCCGCTTGCAACAGGACTTGATGCTTTTGGAAGCGTAC
CAGACCATTGTTGTCTCGGAAAATGAGGACTTGAATCCCGCCCCCACTAA
AACCGTGCACCAGGTACGCTTGCAGCCTGTTTTCCCAGCAAGGAGCGAAC
CTTGGGCAAAAGTCAGAGGGCTTGTAAGAAGTGGGGGCGCATCCATGCAC
CGGTACTTAAACTACTTTCGAAGCCAAACACAAAAGGGAACATTGTTTGC
TATTATACTTGCGCCAGATCGTTGTGTTCGGGTGACAACAGAAAGAAGCA
GCAAACAAAGAGGAACCCGTCTGTTTGTCATCATCCGAACCGAGCTTACG
CTTTTTTTGCTGCATGCACAGCGGTCGCAGCTCGAGAAGACCGACGACAC
GCACGCACGCATATATAAACAGAGGACAGTC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:961997..962477+

>mRNA_Ecto-sp6_S_contig9.18097.1 ID=mRNA_Ecto-sp6_S_contig9.18097.1|Name=mRNA_Ecto-sp6_S_contig9.18097.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:961997..962477+ (Ectocarpus species6 EcLAC_371)
ATGGAGGCCCCCTTGCGCCGCTTGCAACAGGACTTGATGCTTTTGGAAGC
GTACCAGACCATTGTTGTCTCGGAAAATGAGGACTTGAATCCCGCCCCCA
CTAAAACCGTGCACCAGGTACGCTTGCAGCCTGTTTTCCCAGCAAGGAGC
GAACCTTGGGCAAAAGTCAGAGGGCTTGTAAGAAGTGGGGGCGCATCCAT
GCACCGGTACTTAAACTACTTTCGAAGCCAAACACAAAAGGGAACATTGT
TTGCTATTATACTTGCGCCAGATCGTTGTGTTCGGGTGACAACAGAAAGA
AGCAGCAAACAAAGAGGAACCCGTCTGTTTGTCATCATCCGAACCGAGCT
TACGCTTTTTTTGCTGCATGCACAGCGGTCGCAGCTCGAGAAGACCGACG
ACACGCACGCACGCATATATAAACAGAGGACAGTC
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