mRNA_Ecto-sp6_S_contig9.18094.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18094.1 vs. uniprot
Match: A0A6H5JCP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCP2_9PHAE) HSP 1 Score: 557 bits (1435), Expect = 3.610e-195 Identity = 306/431 (71.00%), Postives = 308/431 (71.46%), Query Frame = 1
Query: 1 MRRPLKCTLLLSVAWRRPCAAAELCRPQQQQPPTPLTRKHNGDSGPGGQDRIVPNSSSAPRQTTVLPGTVFHARGGGINVAFTRGCRNKWQDGVNRRAIPAPEALSRYPNLKSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEV--------------------------------------------------------------------------------------------------------EYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRNSKDPLLRICAGFFTVVILRLLACLYDLRLPRMV 981
M R LKC LLLSVAWRRPCAAAEL RPQ Q PPTPL R HNGDS PGGQDRI PNSSSAPRQT VLPGTV HARGGGINVAFTRG RNKWQDGVNRRAIP PEALSRYPN KSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEV EYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDT+GLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAA GSGAYLLARR SKDPL RIC GFFTV+ILRLLACLYDLRLPRMV
Sbjct: 1 MLRLLKCILLLSVAWRRPCAAAELWRPQPQ-PPTPLARNHNGDSDPGGQDRIFPNSSSAPRQTVVLPGTVVHARGGGINVAFTRGSRNKWQDGVNRRAIPTPEALSRYPNFKSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVGVRGAWIVLFFCGAGDLVGRSLCPTSPCAFLRFLACLDAWVELALRRFCSVDGGVGCLPSLALLFLIGRIWRCLLMFVLRHSSVVWPVAVLLSWTPLLLPLSQVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAIGSGAYLLARRYSKDPLFRICVGFFTVIILRLLACLYDLRLPRMV 430
BLAST of mRNA_Ecto-sp6_S_contig9.18094.1 vs. uniprot
Match: D8LLZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ7_ECTSI) HSP 1 Score: 259 bits (663), Expect = 1.260e-81 Identity = 142/185 (76.76%), Postives = 143/185 (77.30%), Query Frame = 1
Query: 391 MSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRNSKDPLLRICAGFFTVVILRLL 945
MSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVE AIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARR SKDPL R+CAGFFTVVILRLL
Sbjct: 1 MSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVE----------------------------------------AIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRYSKDPLFRVCAGFFTVVILRLL 145
BLAST of mRNA_Ecto-sp6_S_contig9.18094.1 vs. uniprot
Match: A0A835ZGC7_9STRA (UPF0126 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC7_9STRA) HSP 1 Score: 253 bits (645), Expect = 4.780e-78 Identity = 129/233 (55.36%), Postives = 167/233 (71.67%), Query Frame = 1
Query: 280 VNRRAIPAPEALSRYPNLKSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRNSKDPLLRICAGFFTVVILRLLACLYDLRLPRM 978
N+ +P E+++RYP+L+S GGL+R LDY+GTV+FA GA AG GM+LLGCI +GV+ A GGGT RDLLLGQTPVFWL EVEY+ +C+VT++ TF WP L + +LS G+ DG L + +DTIGL +FAV TQ+GIRR+ HP T+VI ITCS GG+ RDV+T +P+ + SHA++Y +TAA GS AYL+AR DPLLR+ AGF V R A DLRLP +
Sbjct: 36 ANQGDLPR-ESMTRYPSLRSAGGLLRSLDYLGTVAFATGGAICAGRAGMDLLGCIEIGVITAMGGGTTRDLLLGQTPVFWLQEVEYLAMCIVTSIATFYAWPHLRHMPILSASGSSDDGALPRWLDTIGLGAFAVVGTQHGIRRRLHPLATVVIATITCSFGGVTRDVMTKAPIRVMHSHAELYATTAAAGSCAYLIARAAVADPLLRMAAGFGVTVAARFAAWTLDLRLPTL 267
BLAST of mRNA_Ecto-sp6_S_contig9.18094.1 vs. uniprot
Match: D8LE41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE41_ECTSI) HSP 1 Score: 191 bits (485), Expect = 1.310e-53 Identity = 102/231 (44.16%), Postives = 139/231 (60.17%), Query Frame = 1
Query: 280 VNRRAIPAPEALSRYPNLKSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRNSKDPLLRICAGFFTVVILRLLACLYDLRLP 972
+NR P + L+RYP +SP G++R LDY+GT FA+SG TAG GM+LLGCI VG + ATGGGTVRD+LLG TPVFW+ E EY+ +C+ T V F LW S L+ G D L +D +G+ +F Q G+R+ + +T + GG++RDVL S P L SH ++Y STA GS Y+ + P++RI +GF + V LR+LA D+RLP
Sbjct: 61 INRYIEPPEDGLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAGQVGMDLLGCIIVGTITATGGGTVRDVLLGNTPVFWMHETEYLWMCLATTVGIFFLW------SYLAERGVRDDMALLNWVDAMGVGAFCCIGAQAGVRKGLSNVVCVACGMLTSTFGGVIRDVLCSRPPRILFSHCEIYASTAVLGSAVYIATKAAGLPPVVRIMSGFLSAVALRVLAFTTDIRLP 285
BLAST of mRNA_Ecto-sp6_S_contig9.18094.1 vs. uniprot
Match: A0A6H5JGY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY7_9PHAE) HSP 1 Score: 192 bits (487), Expect = 5.710e-53 Identity = 102/231 (44.16%), Postives = 140/231 (60.61%), Query Frame = 1
Query: 280 VNRRAIPAPEALSRYPNLKSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRNSKDPLLRICAGFFTVVILRLLACLYDLRLP 972
+NR P + L+RYP +SP G++R LDY+GT FA+SG TAG GM+LLGCI VG + ATGGGTVRD+LLG TPVFW+ E EY+ +C+ T+V F LW S L+ G D L +D +G+ +F Q G+R+ + +T + GG++RDVL S P L SH ++Y STA GS Y+ + P++RI +GF + V LR+LA D+RLP
Sbjct: 143 INRYIEPPEDGLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAGHVGMDLLGCIIVGTITATGGGTVRDMLLGNTPVFWMHETEYLWMCLATSVGVFFLW------SYLAERGVRNDMALLNWVDAMGVGAFCCIGAQAGVRKGLSNVVCVACGMLTSTFGGVIRDVLCSRPPRILFSHCEIYASTAVLGSAVYIATKAAGLPPVVRIMSGFLSAVALRVLAFTTDIRLP 367
BLAST of mRNA_Ecto-sp6_S_contig9.18094.1 vs. uniprot
Match: A0A836CDZ5_9STRA (UPF0126 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDZ5_9STRA) HSP 1 Score: 186 bits (473), Expect = 4.270e-52 Identity = 102/222 (45.95%), Postives = 129/222 (58.11%), Query Frame = 1
Query: 307 EALSRYPNLKSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRNSKDPLLRICAGFFTVVILRLLACLYDLRLP 972
+ L+RYP+L SP G++R LD GTV FA SG TAG GM+LLGC VG + A GGGTVRDLLLG TPVFW+ E EY+ IC+ AV TF + S L+ G D L D +G+ +F V QN +RR+ + T + GG++RDVL P L SHA++Y STA G+G Y+ RR P+LRI GF LR+ A LRLP
Sbjct: 22 DGLTRYPSLSSPQGVLRGLDLFGTVVFAYSGCVTAGQAGMDLLGCTIVGTITAVGGGTVRDLLLGNTPVFWMTETEYLYICLAAAVGTFFTY------SALAEQGFTTDSELLNWADALGVGAFCVIGAQNAVRRRLSTAICVACGMFTATFGGVIRDVLCQRPPRILHSHAEIYASTALVGAGTYMALRRARATPMLRIAGGFGAAFALRIAAWKLQLRLP 237
BLAST of mRNA_Ecto-sp6_S_contig9.18094.1 vs. uniprot
Match: A0A7S1TDV4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDV4_9RHOD) HSP 1 Score: 175 bits (443), Expect = 1.550e-48 Identity = 100/224 (44.64%), Postives = 134/224 (59.82%), Query Frame = 1
Query: 307 EALSRYPNLKSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRNSKDPLLRICAGFFTVVILRLLACLYDLRLPRM 978
+ + R+PN S GGL+R LDY GT+ FA SG A GM+LLGC VG + A GGGTVRDL LG PVFW+VE EY+ +C++T+ +T LWPVL+R S S ++ + D GL++F V QNGIR P ++V +T + GG++RDVL P L SHA++Y S AA G+ +Y+LA R RI G + R+ A YD+RLP M
Sbjct: 6 DGMPRFPNW-SAGGLLRGLDYGGTIVFAFSGTVQAAAHGMDLLGCSVVGAITAVGGGTVRDLFLGNRPVFWMVETEYLILCLITSGLTLALWPVLTRDSNSSSTFKKVELYS----DAAGLSAFCVIGAQNGIRLGVPPIISVVCGMMTATFGGVIRDVLCQRPARILHSHAEVYASCAAVGAASYVLAARMMMAMPARIGVGVGAALTARIAAFTYDIRLPTM 224
BLAST of mRNA_Ecto-sp6_S_contig9.18094.1 vs. uniprot
Match: A0A5J4Z897_PORPP (UPF0126 membrane protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z897_PORPP) HSP 1 Score: 178 bits (452), Expect = 3.420e-48 Identity = 97/222 (43.69%), Postives = 134/222 (60.36%), Query Frame = 1
Query: 307 EALSRYPNLKSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRNSKDPLLRICAGFFTVVILRLLACLYDLRLP 972
+++ RYP+L SPGG +R DY+GT FA++GA TA GM++LGC VG + A GGGT RDLL+G PVFWL+E EY+ I V T+++ F WP +S +G D + ID+ L +F+ T NGIR +P +V +TC+ GG++RD PV L S+A++Y +TAA GS AY+ AR +LRI G + I+RL A Y RLP
Sbjct: 122 DSMPRYPDL-SPGGFLRAFDYIGTSIFALTGALTAASGGMDVLGCTVVGTITAVGGGTTRDLLMGARPVFWLIESEYIAIAVATSLLAFFFWPDVS-----DALGITEDEYFINVIDSWSLGAFSCIGTMNGIRAGYNPLIVLVCAVVTCTFGGVVRDTFLKRPVRVLHSYAEIYATTAAVGSIAYMAARAMQLPLVLRISLGLSSTFIMRLWAMKYGTRLP 337
BLAST of mRNA_Ecto-sp6_S_contig9.18094.1 vs. uniprot
Match: A0A7S1XFC8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XFC8_9RHOD) HSP 1 Score: 175 bits (443), Expect = 1.970e-47 Identity = 100/224 (44.64%), Postives = 134/224 (59.82%), Query Frame = 1
Query: 307 EALSRYPNLKSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRNSKDPLLRICAGFFTVVILRLLACLYDLRLPRM 978
+ + R+PN S GGL+R LDY GT+ FA SG A GM+LLGC VG + A GGGTVRDL LG PVFW+VE EY+ +C++T+ +T LWPVL+R S S ++ + D GL++F V QNGIR P ++V +T + GG++RDVL P L SHA++Y S AA G+ +Y+LA R RI G + R+ A YD+RLP M
Sbjct: 96 DGMPRFPNW-SAGGLLRGLDYGGTIVFAFSGTVQAAAHGMDLLGCSVVGAITAVGGGTVRDLFLGNRPVFWMVETEYLILCLITSGLTLALWPVLTRDSNSSSTFKKVELYS----DAAGLSAFCVIGAQNGIRLGVPPIISVVCGMMTATFGGVIRDVLCQRPARILHSHAEVYASCAAVGAASYVLAARMMMAMPARIGVGVGAALTARIAAFTYDIRLPTM 314
BLAST of mRNA_Ecto-sp6_S_contig9.18094.1 vs. uniprot
Match: A0A6T5MA33_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5MA33_HETAK) HSP 1 Score: 165 bits (417), Expect = 1.450e-43 Identity = 97/222 (43.69%), Postives = 126/222 (56.76%), Query Frame = 1
Query: 307 EALSRYPNLKSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRNSKDPLLRICAGFFTVVILRLLACLYDLRLP 972
+ + R+P+ S GGL+R LDY GTV FA+ G+ TAG+ GM+LLGC VG + A GGGTVRDLLLG PVFW++E EYV + + A F W L L L W D G+ +F+V QNG+R HP +V IT + GG++RDVL P L S +++Y +TA G+ AY AR S P +I GF V R A YD+RLP
Sbjct: 104 DGMPRFPST-SAGGLLRGLDYFGTVVFALGGSVTAGLAGMDLLGCTIVGTVTAVGGGTVRDLLLGNFPVFWMLETEYVLLSLACAWAGFFGWDYLHEHWHLEENSDILRWW-----DACGVGAFSVIGAQNGLRAGLHPAVAVVCGMITATFGGMIRDVLCQKPPRILHSQSEVYATTALIGAAAYTAAR--SLPPAAKIGLGFSAAVASRYAAWTYDIRLP 317 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig9.18094.1 >prot_Ecto-sp6_S_contig9.18094.1 ID=prot_Ecto-sp6_S_contig9.18094.1|Name=mRNA_Ecto-sp6_S_contig9.18094.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=328bp MRRPLKCTLLLSVAWRRPCAAAELCRPQQQQPPTPLTRKHNGDSGPGGQDback to top mRNA from alignment at Ecto-sp6_S_contig9:944547..947478+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig9.18094.1 ID=mRNA_Ecto-sp6_S_contig9.18094.1|Name=mRNA_Ecto-sp6_S_contig9.18094.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2932bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:944547..947478+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:944547..947478+ >mRNA_Ecto-sp6_S_contig9.18094.1 ID=mRNA_Ecto-sp6_S_contig9.18094.1|Name=mRNA_Ecto-sp6_S_contig9.18094.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=984bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:944547..947478+ (Ectocarpus species6 EcLAC_371)back to top |