mRNA_Ecto-sp6_S_contig9.18094.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18094.1
Unique NamemRNA_Ecto-sp6_S_contig9.18094.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18094.1 vs. uniprot
Match: A0A6H5JCP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCP2_9PHAE)

HSP 1 Score: 557 bits (1435), Expect = 3.610e-195
Identity = 306/431 (71.00%), Postives = 308/431 (71.46%), Query Frame = 1
Query:    1 MRRPLKCTLLLSVAWRRPCAAAELCRPQQQQPPTPLTRKHNGDSGPGGQDRIVPNSSSAPRQTTVLPGTVFHARGGGINVAFTRGCRNKWQDGVNRRAIPAPEALSRYPNLKSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEV--------------------------------------------------------------------------------------------------------EYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRNSKDPLLRICAGFFTVVILRLLACLYDLRLPRMV 981
            M R LKC LLLSVAWRRPCAAAEL RPQ Q PPTPL R HNGDS PGGQDRI PNSSSAPRQT VLPGTV HARGGGINVAFTRG RNKWQDGVNRRAIP PEALSRYPN KSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEV                                                                                                        EYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDT+GLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAA GSGAYLLARR SKDPL RIC GFFTV+ILRLLACLYDLRLPRMV
Sbjct:    1 MLRLLKCILLLSVAWRRPCAAAELWRPQPQ-PPTPLARNHNGDSDPGGQDRIFPNSSSAPRQTVVLPGTVVHARGGGINVAFTRGSRNKWQDGVNRRAIPTPEALSRYPNFKSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVGVRGAWIVLFFCGAGDLVGRSLCPTSPCAFLRFLACLDAWVELALRRFCSVDGGVGCLPSLALLFLIGRIWRCLLMFVLRHSSVVWPVAVLLSWTPLLLPLSQVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAIGSGAYLLARRYSKDPLFRICVGFFTVIILRLLACLYDLRLPRMV 430          
BLAST of mRNA_Ecto-sp6_S_contig9.18094.1 vs. uniprot
Match: D8LLZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ7_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 1.260e-81
Identity = 142/185 (76.76%), Postives = 143/185 (77.30%), Query Frame = 1
Query:  391 MSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRNSKDPLLRICAGFFTVVILRLL 945
            MSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVE                                        AIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARR SKDPL R+CAGFFTVVILRLL
Sbjct:    1 MSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVE----------------------------------------AIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRYSKDPLFRVCAGFFTVVILRLL 145          
BLAST of mRNA_Ecto-sp6_S_contig9.18094.1 vs. uniprot
Match: A0A835ZGC7_9STRA (UPF0126 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC7_9STRA)

HSP 1 Score: 253 bits (645), Expect = 4.780e-78
Identity = 129/233 (55.36%), Postives = 167/233 (71.67%), Query Frame = 1
Query:  280 VNRRAIPAPEALSRYPNLKSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRNSKDPLLRICAGFFTVVILRLLACLYDLRLPRM 978
             N+  +P  E+++RYP+L+S GGL+R LDY+GTV+FA  GA  AG  GM+LLGCI +GV+ A GGGT RDLLLGQTPVFWL EVEY+ +C+VT++ TF  WP L  + +LS  G+  DG L + +DTIGL +FAV  TQ+GIRR+ HP  T+VI  ITCS GG+ RDV+T +P+  + SHA++Y +TAA GS AYL+AR    DPLLR+ AGF   V  R  A   DLRLP +
Sbjct:   36 ANQGDLPR-ESMTRYPSLRSAGGLLRSLDYLGTVAFATGGAICAGRAGMDLLGCIEIGVITAMGGGTTRDLLLGQTPVFWLQEVEYLAMCIVTSIATFYAWPHLRHMPILSASGSSDDGALPRWLDTIGLGAFAVVGTQHGIRRRLHPLATVVIATITCSFGGVTRDVMTKAPIRVMHSHAELYATTAAAGSCAYLIARAAVADPLLRMAAGFGVTVAARFAAWTLDLRLPTL 267          
BLAST of mRNA_Ecto-sp6_S_contig9.18094.1 vs. uniprot
Match: D8LE41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE41_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 1.310e-53
Identity = 102/231 (44.16%), Postives = 139/231 (60.17%), Query Frame = 1
Query:  280 VNRRAIPAPEALSRYPNLKSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRNSKDPLLRICAGFFTVVILRLLACLYDLRLP 972
            +NR   P  + L+RYP  +SP G++R LDY+GT  FA+SG  TAG  GM+LLGCI VG + ATGGGTVRD+LLG TPVFW+ E EY+ +C+ T V  F LW      S L+  G   D  L   +D +G+ +F     Q G+R+       +    +T + GG++RDVL S P   L SH ++Y STA  GS  Y+  +     P++RI +GF + V LR+LA   D+RLP
Sbjct:   61 INRYIEPPEDGLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAGQVGMDLLGCIIVGTITATGGGTVRDVLLGNTPVFWMHETEYLWMCLATTVGIFFLW------SYLAERGVRDDMALLNWVDAMGVGAFCCIGAQAGVRKGLSNVVCVACGMLTSTFGGVIRDVLCSRPPRILFSHCEIYASTAVLGSAVYIATKAAGLPPVVRIMSGFLSAVALRVLAFTTDIRLP 285          
BLAST of mRNA_Ecto-sp6_S_contig9.18094.1 vs. uniprot
Match: A0A6H5JGY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY7_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 5.710e-53
Identity = 102/231 (44.16%), Postives = 140/231 (60.61%), Query Frame = 1
Query:  280 VNRRAIPAPEALSRYPNLKSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRNSKDPLLRICAGFFTVVILRLLACLYDLRLP 972
            +NR   P  + L+RYP  +SP G++R LDY+GT  FA+SG  TAG  GM+LLGCI VG + ATGGGTVRD+LLG TPVFW+ E EY+ +C+ T+V  F LW      S L+  G   D  L   +D +G+ +F     Q G+R+       +    +T + GG++RDVL S P   L SH ++Y STA  GS  Y+  +     P++RI +GF + V LR+LA   D+RLP
Sbjct:  143 INRYIEPPEDGLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAGHVGMDLLGCIIVGTITATGGGTVRDMLLGNTPVFWMHETEYLWMCLATSVGVFFLW------SYLAERGVRNDMALLNWVDAMGVGAFCCIGAQAGVRKGLSNVVCVACGMLTSTFGGVIRDVLCSRPPRILFSHCEIYASTAVLGSAVYIATKAAGLPPVVRIMSGFLSAVALRVLAFTTDIRLP 367          
BLAST of mRNA_Ecto-sp6_S_contig9.18094.1 vs. uniprot
Match: A0A836CDZ5_9STRA (UPF0126 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDZ5_9STRA)

HSP 1 Score: 186 bits (473), Expect = 4.270e-52
Identity = 102/222 (45.95%), Postives = 129/222 (58.11%), Query Frame = 1
Query:  307 EALSRYPNLKSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRNSKDPLLRICAGFFTVVILRLLACLYDLRLP 972
            + L+RYP+L SP G++R LD  GTV FA SG  TAG  GM+LLGC  VG + A GGGTVRDLLLG TPVFW+ E EY+ IC+  AV TF  +      S L+  G   D  L    D +G+ +F V   QN +RR+      +     T + GG++RDVL   P   L SHA++Y STA  G+G Y+  RR    P+LRI  GF     LR+ A    LRLP
Sbjct:   22 DGLTRYPSLSSPQGVLRGLDLFGTVVFAYSGCVTAGQAGMDLLGCTIVGTITAVGGGTVRDLLLGNTPVFWMTETEYLYICLAAAVGTFFTY------SALAEQGFTTDSELLNWADALGVGAFCVIGAQNAVRRRLSTAICVACGMFTATFGGVIRDVLCQRPPRILHSHAEIYASTALVGAGTYMALRRARATPMLRIAGGFGAAFALRIAAWKLQLRLP 237          
BLAST of mRNA_Ecto-sp6_S_contig9.18094.1 vs. uniprot
Match: A0A7S1TDV4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDV4_9RHOD)

HSP 1 Score: 175 bits (443), Expect = 1.550e-48
Identity = 100/224 (44.64%), Postives = 134/224 (59.82%), Query Frame = 1
Query:  307 EALSRYPNLKSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRNSKDPLLRICAGFFTVVILRLLACLYDLRLPRM 978
            + + R+PN  S GGL+R LDY GT+ FA SG   A   GM+LLGC  VG + A GGGTVRDL LG  PVFW+VE EY+ +C++T+ +T  LWPVL+R S  S     ++ +     D  GL++F V   QNGIR    P  ++V   +T + GG++RDVL   P   L SHA++Y S AA G+ +Y+LA R       RI  G    +  R+ A  YD+RLP M
Sbjct:    6 DGMPRFPNW-SAGGLLRGLDYGGTIVFAFSGTVQAAAHGMDLLGCSVVGAITAVGGGTVRDLFLGNRPVFWMVETEYLILCLITSGLTLALWPVLTRDSNSSSTFKKVELYS----DAAGLSAFCVIGAQNGIRLGVPPIISVVCGMMTATFGGVIRDVLCQRPARILHSHAEVYASCAAVGAASYVLAARMMMAMPARIGVGVGAALTARIAAFTYDIRLPTM 224          
BLAST of mRNA_Ecto-sp6_S_contig9.18094.1 vs. uniprot
Match: A0A5J4Z897_PORPP (UPF0126 membrane protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z897_PORPP)

HSP 1 Score: 178 bits (452), Expect = 3.420e-48
Identity = 97/222 (43.69%), Postives = 134/222 (60.36%), Query Frame = 1
Query:  307 EALSRYPNLKSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRNSKDPLLRICAGFFTVVILRLLACLYDLRLP 972
            +++ RYP+L SPGG +R  DY+GT  FA++GA TA   GM++LGC  VG + A GGGT RDLL+G  PVFWL+E EY+ I V T+++ F  WP +S       +G   D +    ID+  L +F+   T NGIR   +P   +V   +TC+ GG++RD     PV  L S+A++Y +TAA GS AY+ AR      +LRI  G  +  I+RL A  Y  RLP
Sbjct:  122 DSMPRYPDL-SPGGFLRAFDYIGTSIFALTGALTAASGGMDVLGCTVVGTITAVGGGTTRDLLMGARPVFWLIESEYIAIAVATSLLAFFFWPDVS-----DALGITEDEYFINVIDSWSLGAFSCIGTMNGIRAGYNPLIVLVCAVVTCTFGGVVRDTFLKRPVRVLHSYAEIYATTAAVGSIAYMAARAMQLPLVLRISLGLSSTFIMRLWAMKYGTRLP 337          
BLAST of mRNA_Ecto-sp6_S_contig9.18094.1 vs. uniprot
Match: A0A7S1XFC8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XFC8_9RHOD)

HSP 1 Score: 175 bits (443), Expect = 1.970e-47
Identity = 100/224 (44.64%), Postives = 134/224 (59.82%), Query Frame = 1
Query:  307 EALSRYPNLKSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRNSKDPLLRICAGFFTVVILRLLACLYDLRLPRM 978
            + + R+PN  S GGL+R LDY GT+ FA SG   A   GM+LLGC  VG + A GGGTVRDL LG  PVFW+VE EY+ +C++T+ +T  LWPVL+R S  S     ++ +     D  GL++F V   QNGIR    P  ++V   +T + GG++RDVL   P   L SHA++Y S AA G+ +Y+LA R       RI  G    +  R+ A  YD+RLP M
Sbjct:   96 DGMPRFPNW-SAGGLLRGLDYGGTIVFAFSGTVQAAAHGMDLLGCSVVGAITAVGGGTVRDLFLGNRPVFWMVETEYLILCLITSGLTLALWPVLTRDSNSSSTFKKVELYS----DAAGLSAFCVIGAQNGIRLGVPPIISVVCGMMTATFGGVIRDVLCQRPARILHSHAEVYASCAAVGAASYVLAARMMMAMPARIGVGVGAALTARIAAFTYDIRLPTM 314          
BLAST of mRNA_Ecto-sp6_S_contig9.18094.1 vs. uniprot
Match: A0A6T5MA33_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5MA33_HETAK)

HSP 1 Score: 165 bits (417), Expect = 1.450e-43
Identity = 97/222 (43.69%), Postives = 126/222 (56.76%), Query Frame = 1
Query:  307 EALSRYPNLKSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRNSKDPLLRICAGFFTVVILRLLACLYDLRLP 972
            + + R+P+  S GGL+R LDY GTV FA+ G+ TAG+ GM+LLGC  VG + A GGGTVRDLLLG  PVFW++E EYV + +  A   F  W  L     L      L  W     D  G+ +F+V   QNG+R   HP   +V   IT + GG++RDVL   P   L S +++Y +TA  G+ AY  AR  S  P  +I  GF   V  R  A  YD+RLP
Sbjct:  104 DGMPRFPST-SAGGLLRGLDYFGTVVFALGGSVTAGLAGMDLLGCTIVGTVTAVGGGTVRDLLLGNFPVFWMLETEYVLLSLACAWAGFFGWDYLHEHWHLEENSDILRWW-----DACGVGAFSVIGAQNGLRAGLHPAVAVVCGMITATFGGMIRDVLCQKPPRILHSQSEVYATTALIGAAAYTAAR--SLPPAAKIGLGFSAAVASRYAAWTYDIRLP 317          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCP2_9PHAE3.610e-19571.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLZ7_ECTSI1.260e-8176.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZGC7_9STRA4.780e-7855.36UPF0126 domain-containing protein n=1 Tax=Tribonem... [more]
D8LE41_ECTSI1.310e-5344.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGY7_9PHAE5.710e-5344.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CDZ5_9STRA4.270e-5245.95UPF0126 domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S1TDV4_9RHOD1.550e-4844.64Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A5J4Z897_PORPP3.420e-4843.69UPF0126 membrane protein n=1 Tax=Porphyridium purp... [more]
A0A7S1XFC8_9RHOD1.970e-4744.64Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A6T5MA33_HETAK1.450e-4343.69Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:944547..947478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score196.4
Seed ortholog evalue2e-47
Seed eggNOG ortholog2880.D8LE41
Model size1356
Hectar predicted targeting categorysignal peptide
Exons4
EggNOG free text desc.UPF0126 domain
EggNOG OGs2B6TB@1,2S0MY@2759
Ec32 ortholog descriptionUncharacterised domain UPF0126
Ec32 orthologEc-14_002260.1
Cds size984
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350525.974365-CDS-Ecto-sp6_S_contig9:944546..9448661682350525.974365-CDS-Ecto-sp6_S_contig9:944546..944866Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 944547..944866 +
1682350525.992478-CDS-Ecto-sp6_S_contig9:945698..9459061682350525.992478-CDS-Ecto-sp6_S_contig9:945698..945906Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 945699..945906 +
1682350526.0121648-CDS-Ecto-sp6_S_contig9:946223..9464751682350526.0121648-CDS-Ecto-sp6_S_contig9:946223..946475Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 946224..946475 +
1682350526.0271184-CDS-Ecto-sp6_S_contig9:946902..9471061682350526.0271184-CDS-Ecto-sp6_S_contig9:946902..947106Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 946903..947106 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350526.0378535-UTR-Ecto-sp6_S_contig9:947106..9474781682350526.0378535-UTR-Ecto-sp6_S_contig9:947106..947478Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 947107..947478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18094.1prot_Ecto-sp6_S_contig9.18094.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 944547..947106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18094.1

>prot_Ecto-sp6_S_contig9.18094.1 ID=prot_Ecto-sp6_S_contig9.18094.1|Name=mRNA_Ecto-sp6_S_contig9.18094.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=328bp
MRRPLKCTLLLSVAWRRPCAAAELCRPQQQQPPTPLTRKHNGDSGPGGQD
RIVPNSSSAPRQTTVLPGTVFHARGGGINVAFTRGCRNKWQDGVNRRAIP
APEALSRYPNLKSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFV
GVLAATGGGTVRDLLLGQTPVFWLVEVEYVTICVVTAVVTFVLWPVLSRV
SVLSHMGTGLDGWLSQAIDTIGLASFAVAATQNGIRRKCHPGTTIVICCI
TCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRNSKDPLL
RICAGFFTVVILRLLACLYDLRLPRMV*
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mRNA from alignment at Ecto-sp6_S_contig9:944547..947478+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18094.1 ID=mRNA_Ecto-sp6_S_contig9.18094.1|Name=mRNA_Ecto-sp6_S_contig9.18094.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2932bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:944547..947478+ (Ectocarpus species6 EcLAC_371)
ATGCGGCGACCGCTGAAATGCACTCTTCTACTCTCGGTGGCGTGGCGACG ACCATGTGCGGCGGCTGAACTGTGTCGACCACAGCAGCAGCAGCCACCGA CGCCTCTCACTCGCAAGCACAACGGCGACTCTGGCCCGGGGGGGCAGGAT CGCATCGTCCCCAACAGCAGCAGCGCTCCAAGACAGACAACGGTGTTGCC AGGAACGGTCTTCCATGCTCGTGGTGGGGGCATCAACGTTGCTTTTACTA GGGGCTGTAGGAACAAGTGGCAGGATGGAGTGAATCGGAGGGCTATCCCG GCTCCAGAGGCGCTCAGCAGGTCGGCAGTTATTTATGCACGTACATTGTG ATGGATAATGGCGTATCATCTGAGCACCGACTGGGGTTCCTGTGCTAGTG CAACAACTGCAGCTACCACGGCTTTTAGGATCCAGTGGCACCCCGCTCTT TTTGCTTCACGCCCAGTAGTAGTGACGCACGTAGATATAGATACACTGCC CTCCCCGGCGGGAGGCGGTGACACTAATATGAGGCCTCCCGGAAAGAGCA CACCTACATGAACGTAGACATGGGACTACAGCAGTGGTATCCCTCGAGCG CATGTACAATGTATAATAGTGTAGATAGCCGCTCGAGCTCTAGAGCACGA GGTTTCCCGCTGCAACAATCGGCTGCGCAACTATCCTCCTCCTGTATCCT CATCATCCCCGTAGCGGCGGGCTGGTGCGGTATCTTCTATTATAGGAGGG CGTGTACCAAAACATGATCGCAGGATCTTGGCTACACATGGAAAAGTTTC GACTTCCCTAAACTTTCTCCATCCCAAGTAGTAGCAGCGCTTTGAAAACT ATTCCTCCTCGTATCGTATGTTGCTGAAGGAAACCCAACGATATCCCTGC TGCCGACGCCTCGCGCAACCGCAGAGGGCGGGCTCATGCGTGTGCTACAC ACTCCACGAGACCCCCCACTGCTGTAGTCAAGATGGCCAGCACCCCAGCC CACCAGCCATCCTACGTTGTCGACGAAACGACGTCTCGGGAGCTCTTTTT CCCGTCCAGAACCTTACAATAGTCATTCGGCGATTCAACGGTATTTTTTT TTAATCCGTTGAGAACCCCCAAGTAACACCCAACCGCCGCGATTCACAAC AGGTATCCGAACTTGAAGAGCCCCGGCGGCCTCGTGCGCTTCTTGGACTA TGTGGGGACGGTTTCTTTCGCGATGAGCGGAGCAGCCACGGCGGGTATGC GGGGGATGAACCTCCTGGGGTGCATTTTCGTGGGGGTGTTGGCGGCGACA GGCGGGGGCACTGTGCGGGACCTGCTGCTCGGCCAGACTCCGGTGTTTTG GCTCGTTGAGGTGGGGGTTCGCGGGGCATGAATAGTGCTGTTGTTTCGCG GCGCGGGTGACTTGGTAGGTCGGTCGCTTTGCCCTCCCTCGCCCTGTGCC TTGCTTGGATTCCTTGCTTGCTTGGACGTCTGGGCAGACTTGGCTCTGCA TAGATTTTTGCTCGGTGGATGGCGGGGTTGGTTGCCTGCCGTCGCTGTCA CTTCTTTTTATGATTGGCCGTATGTGTCGGTGCTTGCTCATGTTTGTCCT GCGGCCCAGCAGCGTCGTGTGGCCGGTAGCAGTTCTTCTCAGCTGTACCC CCCCCAACCCCCCACCCCCTTCCACAGGTCGAGTACGTGACAATATGCGT GGTAACAGCGGTTGTGACGTTTGTGCTGTGGCCGGTGCTGTCTCGAGTGT CCGTCCTATCGCACATGGGCACGGGCCTGGACGGCTGGCTCTCCCAGGCG ATAGACACGATCGGGCTGGCTTCCTTCGCGGTGGCGGCGACCCAGAACGG CATCCGAAGGAAGTGTCACCCGGGCACGACGATCGTCATCTGCTGCATCA CGTGCTCCGGGGGAGGAATCCTGCGAGATGTAGGTTTTGAAACCGCAGTT TGTGATTGAGTGAGAGTGCTTGCTTCCTACCGCTCGTCGTGGTGTGGTGT ATTTTTGTGCGAATCCGACACAGGGTTAGAGGCACCCCGAAAAAACGCGG CTTTCATGCGTTATTCCCTCCAGGCATCAATTTGCATTGGTTTTGAGCGG TTTTTTTTCTTTGACTATCGGGTAGGATGTGCATGTTTGTGCAGCTGTCG TTTTGGAAGAGCGCCAGGGGAGGGCTGCTGCTAATACTTACGACAAAATA TGCTTATATgGGGGGGGAGCGTGAACAGCTATGACATCGGTACCAGCAAT CACAAGCAACACGTTTTTTGCGAGCAACAGCAGCAGAAGAAGAAACCACT GCGTTGCCTAAACTCCGGTTTTGATGAATGATGCTGGCCGTCTCTAAACT TTGCAGGTCCTGACCTCGTCGCCGGTGATGGCGCTCTCATCACACGCCCA GATGTACGTCAGCACGGCCGCCTTCGGTTCGGGGGCGTACCTGCTCGCTA GGAGAAATTCTAAAGACCCGCTCTTACGAATCTGCGCGGGGTTCTTCACT GTAGTCATCCTGCGCCTACTGGCGTGTCTATACGACCTCCGCCTTCCCCG AATGGTTTAGGCTCTTTCTCTCTATGCCCGCTTGGTTCCCAGAACTAACT GTGTGCATGGGCGTGTTTTTGTTTTCGTTGGTGGCATCGACCGCGCTACA TGATTGGCTGACGAATAAAAAAGGCGTCAGTCTCAGCGCGGGTATAACGT ACGTGTGGGTTGGGTGTACGTGTGCATGGTTGCTTGTGCTTTCGTCTACC GGCATCAATTAGAGGTAAAATCCGTCTTTTTATCGGTAGAAAAAAACGCA ACACGCTTCTTATTTATTCCCCGGGCCAGCCCCGATAGAAGAGGCGGAGA ATGGGGTTCCGTGTGTGTGTTAACGCATGTGTGCGTGTTCTCTGTTTCGG AAGCCGTTTGCAGCGGCGACTCGGTAACGAAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:944547..947478+

>mRNA_Ecto-sp6_S_contig9.18094.1 ID=mRNA_Ecto-sp6_S_contig9.18094.1|Name=mRNA_Ecto-sp6_S_contig9.18094.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=984bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:944547..947478+ (Ectocarpus species6 EcLAC_371)
ATGCGGCGACCGCTGAAATGCACTCTTCTACTCTCGGTGGCGTGGCGACG
ACCATGTGCGGCGGCTGAACTGTGTCGACCACAGCAGCAGCAGCCACCGA
CGCCTCTCACTCGCAAGCACAACGGCGACTCTGGCCCGGGGGGGCAGGAT
CGCATCGTCCCCAACAGCAGCAGCGCTCCAAGACAGACAACGGTGTTGCC
AGGAACGGTCTTCCATGCTCGTGGTGGGGGCATCAACGTTGCTTTTACTA
GGGGCTGTAGGAACAAGTGGCAGGATGGAGTGAATCGGAGGGCTATCCCG
GCTCCAGAGGCGCTCAGCAGGTATCCGAACTTGAAGAGCCCCGGCGGCCT
CGTGCGCTTCTTGGACTATGTGGGGACGGTTTCTTTCGCGATGAGCGGAG
CAGCCACGGCGGGTATGCGGGGGATGAACCTCCTGGGGTGCATTTTCGTG
GGGGTGTTGGCGGCGACAGGCGGGGGCACTGTGCGGGACCTGCTGCTCGG
CCAGACTCCGGTGTTTTGGCTCGTTGAGGTCGAGTACGTGACAATATGCG
TGGTAACAGCGGTTGTGACGTTTGTGCTGTGGCCGGTGCTGTCTCGAGTG
TCCGTCCTATCGCACATGGGCACGGGCCTGGACGGCTGGCTCTCCCAGGC
GATAGACACGATCGGGCTGGCTTCCTTCGCGGTGGCGGCGACCCAGAACG
GCATCCGAAGGAAGTGTCACCCGGGCACGACGATCGTCATCTGCTGCATC
ACGTGCTCCGGGGGAGGAATCCTGCGAGATGTCCTGACCTCGTCGCCGGT
GATGGCGCTCTCATCACACGCCCAGATGTACGTCAGCACGGCCGCCTTCG
GTTCGGGGGCGTACCTGCTCGCTAGGAGAAATTCTAAAGACCCGCTCTTA
CGAATCTGCGCGGGGTTCTTCACTGTAGTCATCCTGCGCCTACTGGCGTG
TCTATACGACCTCCGCCTTCCCCGAATGGTTTAG
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