mRNA_Ecto-sp6_S_contig9.18076.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18076.1
Unique NamemRNA_Ecto-sp6_S_contig9.18076.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:806975..807640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size666
Hectar predicted targeting categoryother localisation
Exons1
Cds size447
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350514.8140736-UTR-Ecto-sp6_S_contig9:806974..8071931682350514.8140736-UTR-Ecto-sp6_S_contig9:806974..807193Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 806975..807193 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350514.8226352-CDS-Ecto-sp6_S_contig9:807193..8076401682350514.8226352-CDS-Ecto-sp6_S_contig9:807193..807640Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 807194..807640 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18076.1prot_Ecto-sp6_S_contig9.18076.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 807194..807640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18076.1

>prot_Ecto-sp6_S_contig9.18076.1 ID=prot_Ecto-sp6_S_contig9.18076.1|Name=mRNA_Ecto-sp6_S_contig9.18076.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=149bp
MLKTQNTSICVCVCVCSLCRHQIGSAFVRAPRAGRVRTHAHPGGYKTIRA
GLFHALEMVLCVTCHREIREAGAVVANPMFVYVLSVVKRLSTGESGEGNR
RHACAYVLQPVHPQDRALWALLLPWSVGTKNGWGWFHFIWALLLPLSVG
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mRNA from alignment at Ecto-sp6_S_contig9:806975..807640+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18076.1 ID=mRNA_Ecto-sp6_S_contig9.18076.1|Name=mRNA_Ecto-sp6_S_contig9.18076.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=666bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:806975..807640+ (Ectocarpus species6 EcLAC_371)
ATCGAAAACGTCAGTCTCAGTGCGGTGGAAAACGGAAAAAAAGGCCATGA
TCTGGGACCCCGCGATGGTGTGTGTGTGTGTCGTTATTGTTAGCATCGAC
CGCGCTAACCGGCTGACCAATGAAAAGACGTCAGCCGCAGTGCAGTGTGT
GTGTGTGTGTGTGTGTGTTTTTATTATTAGCATCGACCGCGCCAACCGGC
TGACCAATGAAAAGACGTCATGTTGAAAACACAAAACACTTCTATCTGTG
TGTGTGTGTGTGTGTGCAGTTTGTGTCGACATCAAATAGGATCGGCGTTC
GTTAGGGCACCTCGTGCCGGCCGCGTACGCACGCACGCACACCCTGGGGG
TTACAAGACGATACGCGCGGGTTTGTTCCATGCGTTAGAAATGGTATTGT
GTGTTACCTGTCATCGAGAGATCCGGGAGGCGGGCGCAGTTGTCGCCAAT
CCGATGTTTGTCTACGTCCTCTCGGTTGTGAAGCGATTGAGCACGGGAGA
ATCGGGCGAGGGCAATCGTCGGCATGCGTGTGCATACGTCCTACAACCCG
TGCACCCTCAAGACCGTGCTCTTTGGGCCTTGTTGTTGCCGTGGTCCGTG
GGTACTAAAAATGGTTGGGGTTGGTTTCATTTTATTTGGGCCTTGTTGTT
GCCGTTGTCCGTGGGT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:806975..807640+

>mRNA_Ecto-sp6_S_contig9.18076.1 ID=mRNA_Ecto-sp6_S_contig9.18076.1|Name=mRNA_Ecto-sp6_S_contig9.18076.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:806975..807640+ (Ectocarpus species6 EcLAC_371)
ATGTTGAAAACACAAAACACTTCTATCTGTGTGTGTGTGTGTGTGTGCAG
TTTGTGTCGACATCAAATAGGATCGGCGTTCGTTAGGGCACCTCGTGCCG
GCCGCGTACGCACGCACGCACACCCTGGGGGTTACAAGACGATACGCGCG
GGTTTGTTCCATGCGTTAGAAATGGTATTGTGTGTTACCTGTCATCGAGA
GATCCGGGAGGCGGGCGCAGTTGTCGCCAATCCGATGTTTGTCTACGTCC
TCTCGGTTGTGAAGCGATTGAGCACGGGAGAATCGGGCGAGGGCAATCGT
CGGCATGCGTGTGCATACGTCCTACAACCCGTGCACCCTCAAGACCGTGC
TCTTTGGGCCTTGTTGTTGCCGTGGTCCGTGGGTACTAAAAATGGTTGGG
GTTGGTTTCATTTTATTTGGGCCTTGTTGTTGCCGTTGTCCGTGGGT
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