mRNA_Ecto-sp6_S_contig9.18066.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18066.1
Unique NamemRNA_Ecto-sp6_S_contig9.18066.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18066.1 vs. uniprot
Match: A0A6H5KS56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS56_9PHAE)

HSP 1 Score: 374 bits (961), Expect = 5.050e-118
Identity = 359/424 (84.67%), Postives = 363/424 (85.61%), Query Frame = 1 
Query:    1 MAPVSTSPPAGEDGGKLVVAAVAGPVGVTTPAPTKARPPRSSSRPRNLRSQQAEAPAGAGGEEERRLEVDRNMARRALLNSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGLSPGGEEGSADRLHGRGFFSASPREGESGDSGXXXX-----VVRTVFPKPGXXXXXXXXXEMLSPLRSPMPRXXXXXXXXXXXXXXXANVESGRPLAPAVATEEAYNPAYSSVWASWIGLGPSAPEARGGATNXXXXXXXXXXXXXXXXXXSASSNGVPRATNGAGGSREPAQQAEGAARNGSRAASPLGQMMMGLFRGVGSPPLQLSPDRFVPEQMADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---AQAAGAVLNAEKPE 1248
            +A VSTSPPAG+DGGKL VA VAGPVGVTTPAPTKARPPRSS RPRNLRSQQAE P    GEEERRLEVDRN ARRALLNS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    ADGLSPGGEEG+ DRLHGRGFFSASPREG+SGD  XXXX     VVRTVFPKPG XXXXX   EMLSPLRSPMPR                NVESGRPLAPAVATEEAYNPAYSSVWASWIGLGPSAPEARGGATNXXXXX             SASSNGV RATNGAGGSREPAQQAEGAARNGSRAASPLGQMMMGLFRGVGSPPLQLSP RFVPEQMADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   AQAAGAVLNAEKPE
Sbjct:  518 IAHVSTSPPAGDDGGKLAVA-VAGPVGVTTPAPTKARPPRSSLRPRNLRSQQAEPPTV--GEEERRLEVDRNTARRALLNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----ADGLSPGGEEGNTDRLHGRGFFSASPREGDSGDXXXXXXXXXXXVVRTVFPKPGGXXXXXSGSEMLSPLRSPMPRRQGSGGPSTAAAEAAVNVESGRPLAPAVATEEAYNPAYSSVWASWIGLGPSAPEARGGATNXXXXXA------------SASSNGVTRATNGAGGSREPAQQAEGAARNGSRAASPLGQMMMGLFRGVGSPPLQLSPHRFVPEQMADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQAAGAVLNAEKPE 922
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BLAST of mRNA_Ecto-sp6_S_contig9.18066.1 vs. uniprot
Match: D8LM20_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM20_ECTSI)

HSP 1 Score: 354 bits (908), Expect = 6.730e-116
Identity = 311/343 (90.67%), Postives = 314/343 (91.55%), Query Frame = 1 
Query:    1 MAPVSTSPPAGEDGGKLVVAAVAGPVGVTTPAPTKARPPRSSSRPRNLRSQQAEAPAGAGGEEERRLEVDRNMARRALLNSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGLSPGGEEGSADRLHGRGFFSASPREGESGDSGXXXX---VVRTVFPKPGXXXXXXXXX--EMLSPLRSPMPRXXXXXXXXXXXXXXXANVESGRPLAPAVATEEAYNPAYSSVWASWIGLGPSAPEARGGATNXXXXXXXXXXXXXXXXXXSASSNGVPRATNGAGGSREPAQQAEGAARNGSRAASPLGQMMM 1014
            MAPVSTSPPAG+DGGKLVVAAVAGPVGVTTPAPTKARPPRSSSRPRNLRSQQAEAPAGAGGEEERRLEVDRNMARRALLNSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA+GLSPGGEEGSADRLHG+GFFSASPREGESGDSGXXXX   VVRTVFPKPG   XXXXXX  EMLSPLRSPMPR               ANVESGR LAPAVATEEAYNPAYSSVWASWIGLGPSAPEARGGAT XXXXXXXXXXXXXX    SASSNGVPRATNGAGGSREPAQQAEGAARNGSRAASPLGQMMM
Sbjct:    1 MAPVSTSPPAGDDGGKLVVAAVAGPVGVTTPAPTKARPPRSSSRPRNLRSQQAEAPAGAGGEEERRLEVDRNMARRALLNSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGLSPGGEEGSADRLHGKGFFSASPREGESGDSGXXXXXXXVVRTVFPKPGGGSXXXXXXXXEMLSPLRSPMPRRQASGGPSTAAAAA-ANVESGRRLAPAVATEEAYNPAYSSVWASWIGLGPSAPEARGGATXXXXXXXXXXXXXXX----SASSNGVPRATNGAGGSREPAQQAEGAARNGSRAASPLGQMMM 338
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KS56_9PHAE5.050e-11884.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LM20_ECTSI6.730e-11690.67N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:705488..707205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1251
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionn/a
Ec32 orthologEc-14_002560.1
Cds size1251
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350523.4357712-CDS-Ecto-sp6_S_contig9:705487..7057241682350523.4357712-CDS-Ecto-sp6_S_contig9:705487..705724Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 705488..705724 -
1682350523.444178-CDS-Ecto-sp6_S_contig9:706191..7072051682350523.444178-CDS-Ecto-sp6_S_contig9:706191..707205Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 706192..707205 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18066.1prot_Ecto-sp6_S_contig9.18066.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 705488..707205 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18066.1

>prot_Ecto-sp6_S_contig9.18066.1 ID=prot_Ecto-sp6_S_contig9.18066.1|Name=mRNA_Ecto-sp6_S_contig9.18066.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=417bp
MAPVSTSPPAGEDGGKLVVAAVAGPVGVTTPAPTKARPPRSSSRPRNLRS
QQAEAPAGAGGEEERRLEVDRNMARRALLNSAVRRGGSGGGSDGGYSSGG
GAGGWVRADGGHGSSSGGSGGGGGGGGRSAARRGSSASDGAAAAAAADGL
SPGGEEGSADRLHGRGFFSASPREGESGDSGGGGGVVRTVFPKPGGGSGG
GSGSEMLSPLRSPMPRRQGGGGPSTAAAAAAANVESGRPLAPAVATEEAY
NPAYSSVWASWIGLGPSAPEARGGATNGATNGATNGVTNGATNGASASSN
GVPRATNGAGGSREPAQQAEGAARNGSRAASPLGQMMMGLFRGVGSPPLQ
LSPDRFVPEQMADGGGGNDDDNMSSSSSSSNNSGGGGGGDENSQSAPAAA
GGAQAAGAVLNAEKPE*
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mRNA from alignment at Ecto-sp6_S_contig9:705488..707205-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18066.1 ID=mRNA_Ecto-sp6_S_contig9.18066.1|Name=mRNA_Ecto-sp6_S_contig9.18066.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1718bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:705488..707205- (Ectocarpus species6 EcLAC_371)
ATGGCTCCCGTGTCCACGTCGCCGCCGGCCGGTGAGGACGGCGGTAAGCT
GGTGGTGGCGGCGGTGGCGGGGCCGGTCGGCGTGACGACGCCTGCGCCGA
CCAAGGCGCGCCCCCCGCGGAGCTCCTCGCGACCCAGGAACCTCCGCTCT
CAGCAGGCAGAGGCCCCCGCGGGCGCGGGCGGAGAAGAAGAACGCCGCCT
GGAAGTGGACAGAAACATGGCGAGGCGGGCGCTGCTGAACTCGGCGGTGC
GCCGGGGGGGTTCGGGCGGCGGCAGCGACGGAGGCTATTCGTCCGGAGGT
GGAGCGGGGGGCTGGGTCAGGGCTGATGGTGGTCACGGCAGCAGCAGTGG
GGGCAGCGGCGGCGGCGGCGGCGGCGGCGGGAGGTCGGCAGCGAGGCGCG
GCAGCTCGGCCAGCGATGGGGCGGCGGCAGCGGCGGCGGCGGATGGCTTG
TCGCCCGGCGGGGAAGAAGGCAGCGCCGACCGGCTTCACGGGAGAGGGTT
CTTCTCTGCCTCACCGAGAGAGGGAGAGAGTGGAGATAGCGGCGGCGGCG
GCGGCGTGGTGAGAACGGTCTTCCCGAAGCCCGGAGGCGGCAGCGGCGGC
GGCAGCGGCAGCGAGATGCTCTCCCCCCTTCGTTCGCCCATGCCCCGCCG
CCAGGGGGGCGGGGGTCCGTCGACGGCGGCGGCGGCGGCGGCGGCGAACG
TTGAGAGTGGTCGCCCGCTCGCCCCCGCGGTCGCGACGGAAGAGGCCTAC
AACCCCGCGTACAGCAGCGTGTGGGCTTCCTGGATCGGGCTGGGTCCTTC
GGCGCCAGAAGCAAGGGGAGGGGCGACAAACGGCGCGACAAACGGCGCGA
CAAATGGCGTGACAAACGGCGCGACCAACGGCGCCTCGGCGAGCAGCAAC
GGCGTTCCGAGGGCAACGAACGGGGCGGGAGGGTCCAGGGAACCCGCGCA
GCAGGCGGAAGGTGCTGCCAGGAATGGTTCGAGGGCCGCGTCGCCGCTGG
GACAGATGATGATGGTAAGGAACGAGAGAGAGATTGTTTGGTGGTTGTCG
TATTGTTTGAGGGCGGTTGGTTGTGTTTCGCTTTTATTTTTTGGGAGGGG
GTTGGCAAACCGGTCTGGCGTCGTTTTGTTGTGGCGGTTGCTGGAGGCGT
TCACGTTTTTTGCGGGTGGATGTTGTGTCCAAATCGTATCGCATGTGGCT
TAACTTGCGTGTTGGATCCGGAGAACAGGCTATAATAGCTTCCCCCCTAG
CACCCCCTCACGGGGCCCCAGATTATGTCCTTTGGAATAATCGTTTTCAG
GATTTAACCGCCCTGAGACTCGCGTATTTTTCAGTGGTCAGCCGGGTAGC
GCGGCCGATTCTAATAATTAAGACACACACAAAGCGGTACACACACACAC
ACACACACACATACATGAACCATTTTTCCGCCGCTGTGGTGCGTGCTTCA
TTTTGTTGGCATTTTTTGCTTTTTTTTGCAGGGTCTCTTTCGAGGCGTCG
GGAGCCCACCTCTCCAGCTCAGCCCGGATCGCTTTGTTCCCGAGCAGATG
GCCGATGGTGGTGGTGGCAATGACGACGACAACATGAGCAGTAGCAGCAG
CAGCAGCAACAACAGCGGCGGCGGCGGCGGCGGCGATGAGAACAGCCAGA
GCGCTCCTGCCGCCGCCGGGGGGGCGCAGGCGGCGGGAGCCGTACTCAAC
GCCGAAAAACCCGAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:705488..707205-

>mRNA_Ecto-sp6_S_contig9.18066.1 ID=mRNA_Ecto-sp6_S_contig9.18066.1|Name=mRNA_Ecto-sp6_S_contig9.18066.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1251bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:705488..707205- (Ectocarpus species6 EcLAC_371)
ATGGCTCCCGTGTCCACGTCGCCGCCGGCCGGTGAGGACGGCGGTAAGCT
GGTGGTGGCGGCGGTGGCGGGGCCGGTCGGCGTGACGACGCCTGCGCCGA
CCAAGGCGCGCCCCCCGCGGAGCTCCTCGCGACCCAGGAACCTCCGCTCT
CAGCAGGCAGAGGCCCCCGCGGGCGCGGGCGGAGAAGAAGAACGCCGCCT
GGAAGTGGACAGAAACATGGCGAGGCGGGCGCTGCTGAACTCGGCGGTGC
GCCGGGGGGGTTCGGGCGGCGGCAGCGACGGAGGCTATTCGTCCGGAGGT
GGAGCGGGGGGCTGGGTCAGGGCTGATGGTGGTCACGGCAGCAGCAGTGG
GGGCAGCGGCGGCGGCGGCGGCGGCGGCGGGAGGTCGGCAGCGAGGCGCG
GCAGCTCGGCCAGCGATGGGGCGGCGGCAGCGGCGGCGGCGGATGGCTTG
TCGCCCGGCGGGGAAGAAGGCAGCGCCGACCGGCTTCACGGGAGAGGGTT
CTTCTCTGCCTCACCGAGAGAGGGAGAGAGTGGAGATAGCGGCGGCGGCG
GCGGCGTGGTGAGAACGGTCTTCCCGAAGCCCGGAGGCGGCAGCGGCGGC
GGCAGCGGCAGCGAGATGCTCTCCCCCCTTCGTTCGCCCATGCCCCGCCG
CCAGGGGGGCGGGGGTCCGTCGACGGCGGCGGCGGCGGCGGCGGCGAACG
TTGAGAGTGGTCGCCCGCTCGCCCCCGCGGTCGCGACGGAAGAGGCCTAC
AACCCCGCGTACAGCAGCGTGTGGGCTTCCTGGATCGGGCTGGGTCCTTC
GGCGCCAGAAGCAAGGGGAGGGGCGACAAACGGCGCGACAAACGGCGCGA
CAAATGGCGTGACAAACGGCGCGACCAACGGCGCCTCGGCGAGCAGCAAC
GGCGTTCCGAGGGCAACGAACGGGGCGGGAGGGTCCAGGGAACCCGCGCA
GCAGGCGGAAGGTGCTGCCAGGAATGGTTCGAGGGCCGCGTCGCCGCTGG
GACAGATGATGATGGGTCTCTTTCGAGGCGTCGGGAGCCCACCTCTCCAG
CTCAGCCCGGATCGCTTTGTTCCCGAGCAGATGGCCGATGGTGGTGGTGG
CAATGACGACGACAACATGAGCAGTAGCAGCAGCAGCAGCAACAACAGCG
GCGGCGGCGGCGGCGGCGATGAGAACAGCCAGAGCGCTCCTGCCGCCGCC
GGGGGGGCGCAGGCGGCGGGAGCCGTACTCAACGCCGAAAAACCCGAGTG
A
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