mRNA_Ecto-sp6_S_contig9.18061.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18061.1
Unique NamemRNA_Ecto-sp6_S_contig9.18061.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18061.1 vs. uniprot
Match: A0A6H5L0Z2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z2_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 3.140e-12
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 MLRWAGFRRQGSDELFKIDDKRLGASDAVAAAVKEIWTKVAAAFPVVGYSQ 153
            M R AGFRRQGSDELF+ID  RLG SDAVAAAVK+I TK+AA FPV+GY+Q
Sbjct:  179 MPRRAGFRRQGSDELFEIDRSRLGVSDAVAAAVKDICTKLAAVFPVIGYNQ 229
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BLAST of mRNA_Ecto-sp6_S_contig9.18061.1 vs. uniprot
Match: A0A6H5JQ60_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQ60_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 3.250e-12
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 MLRWAGFRRQGSDELFKIDDKRLGASDAVAAAVKEIWTKVAAAFPVVGYSQ 153
            M R AGFRRQGSDELF++D  RLG SDAVAAAVKEI TK+AA FPV+GY+Q
Sbjct:  195 MPRRAGFRRQGSDELFEVDRSRLGVSDAVAAAVKEICTKLAAVFPVIGYNQ 245
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BLAST of mRNA_Ecto-sp6_S_contig9.18061.1 vs. uniprot
Match: A0A6H5K5C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C0_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 3.910e-12
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 MLRWAGFRRQGSDELFKIDDKRLGASDAVAAAVKEIWTKVAAAFPVVGYSQ 153
            M R AGFRRQGSDELF++D  RLG SDAVAAAVKEI TK+AA FPV+GY+Q
Sbjct:  200 MPRRAGFRRQGSDELFEVDRSRLGVSDAVAAAVKEICTKLAAVFPVIGYNQ 250
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L0Z2_9PHAE3.140e-1276.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQ60_9PHAE3.250e-1276.47Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K5C0_9PHAE3.910e-1276.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:667911..674007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size774
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-14_002610.1
Cds size774
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350523.002243-CDS-Ecto-sp6_S_contig9:667910..6680741682350523.002243-CDS-Ecto-sp6_S_contig9:667910..668074Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 667911..668074 +
1682350523.013712-CDS-Ecto-sp6_S_contig9:670753..6712541682350523.013712-CDS-Ecto-sp6_S_contig9:670753..671254Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 670754..671254 +
1682350523.0238316-CDS-Ecto-sp6_S_contig9:672972..6729831682350523.0238316-CDS-Ecto-sp6_S_contig9:672972..672983Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 672973..672983 +
1682350523.0337443-CDS-Ecto-sp6_S_contig9:673909..6740071682350523.0337443-CDS-Ecto-sp6_S_contig9:673909..674007Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 673910..674007 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18061.1prot_Ecto-sp6_S_contig9.18061.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 667911..674007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18061.1

>prot_Ecto-sp6_S_contig9.18061.1 ID=prot_Ecto-sp6_S_contig9.18061.1|Name=mRNA_Ecto-sp6_S_contig9.18061.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=258bp
MLRWAGFRRQGSDELFKIDDKRLGASDAVAAAVKEIWTKVAAAFPVVGYS
QARTCCARFYEIYAYTQPATGDHSDRLADRAEYCFFVFCPAAFPIKTAVV
LTRETNSQEPHIHSSVPEGQHTRTTPPEPGTLSRKPQYKALPPVPAGLCA
TESVKSNQGVCVCWGGRSGSSTRLCVRISLVSCFCLPRETRASERRDGFG
IQLAVDRQRGEHEERVGPLHPGREAGADQAVQQSREHPLERIENGPVRGA
VHGKRGS*
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mRNA from alignment at Ecto-sp6_S_contig9:667911..674007+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18061.1 ID=mRNA_Ecto-sp6_S_contig9.18061.1|Name=mRNA_Ecto-sp6_S_contig9.18061.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6097bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:667911..674007+ (Ectocarpus species6 EcLAC_371)
ATGCTGCGCTGGGCGGGATTCAGGCGCCAAGGCAGCGATGAACTCTTCAA
GATCGATGACAAGCGCCTGGGAGCGAGCGATGCCGTCGCCGCCGCTGTGA
AGGAGATTTGGACCAAAGTGGCCGCGGCATTCCCTGTCGTCGGGTACAGC
CAGGCAAGGACATGGTGAGGCCGCGGGGTGCCGTAGGAATGTCTTGGTCC
CGATCCTTACTCGCCGACCGTTGGCGAGAGATGGATGTCCGGCCGCTCCG
GGAATGAAATGGTGGTTTCGGTGCTGTGCGTGGCACGATAGGATCTCGTT
TCCCGATCAAGATGCTCTCTGTTGCTTGGTTGATTTCCATGGCGTTCACT
GTCTCTTCTCGCTGCTGCTATAGCCTACAACAGCCGTAGAGCCAGCATTT
AATGGGTTTTTCGTTCAACTGATCCTGGCTGTACACACCGCCCCCGCCAT
ATTACTACGCCCCAGGGTTTTGACGCCGCCTTCAAGGCCGTTTTGCTCTG
TGTGGGCCAAAATATTGTGGCAGCAGTCCAAGTTTTCCAAAAGTGGGCCG
TCCTTGTGGCTTGGCTTACGATGAACCCCGACAAGGACGGCCAGTGCGCG
ATTCATGCGGGGAGCATCTAAAGACTGCCGCGTGAGGTGTGACGATCGAG
ACGTAAGCATTGACGACGTGGCGGTGGAACGTGTATTCAACTCAGAATTG
AGCGGTGATGTTTTCAGCCGAAAGAAGGAGAGTCGAGGGCTGAACCCACC
CTAATTGGTGACGAAACACTGATGATACCGTCAACCATAAAAAAACGAAA
CACACGACAGCGTGTACCGCCAGTGATGGGTGTTCATAAACCGAACGACG
TAAGCAAAGTGCCATGAGGTCACGTGCCCCTGTGAAAGAACGACTCATGC
GCCTCTTGTACACGATCGCCTGAATGTGACGGCATTCACTTGTGACGGCA
TTCACTTGTACTGCGCTCGAACTAATGTACCTCTTGCCGCAGGCCATGCG
TCACACATGGACCGTGATCAAGATGCACGCCGCTCCGGTGTCACGATGGC
TGTCCCGAGACCCGATGGTGGGTTGCGACCCGGACGACGAGATGGCTGAG
AGCATCCTCAAGCACGTTTTCCTGGGGTGAGTCTGTGTTTGCATTCTTGG
TTGCCGTAACTGCTTGCTTTAGGAAGCAACGAGCTAGTTGGATGTGTGTC
ATCAATCTTGTGAGGATTTTACTGCAGTTGTCACTTTGTATACGTGGACC
GAATACATCCATCTCTCGCTTCTCCTTGTCCTTGATCTATCGTACTTACG
TTGGCACCCTGGAACTTCGATGTACTTGTCCAATCTTCTTCTTCTCCGGC
TGCTGCCAGGTCGCTCACGACCTCGTGCACCCGACTTGGCCTCCCGAGGT
GTGTCGTACACGAGATCCTTGAGAAAACCTTAAAGGCTGGCGCGCACGGC
CCGGCCGTCTCCATTTTCCTGGTCCTTTCTTTCGTTTGCTTGGCGGAGAA
GCAGGGTGCGTGGGATGCCTACGTGGTACGCGAAGGTTGTTTGCACTCGA
TAGGGACGCAGTTATATGCATGACTGTCGTTGATGCCCGCGTCTGACCGA
TACTCTGTGCAGTTACCGTCAAGTCTTCATCGCCCCCCTTCCCCTACCAT
CATCGGCTGCGACATGTATGCCGTGCCCAAGCTTGCCGTGCCACACCAAC
CAATTGGTACTTTTTTCTTCCGTCTTGGGAAGGAAACTGCAACCGACGCT
CCTCCCCCTCCCCCTCTCCCTAGTTTTTGTATTTGTTTGCGAGGAGTACC
GAAACTGTGTACCAAAAATATACATATCATGAAAATTCCAAGTGACCGCT
TTCGCAACCAAATCGCTGCCTGCATACCTCCCTAGTGCCCCATCGTGCCA
GGTGGTGATGATGTAGGTACTGCTGTCAGGTGCGCTGCTTTTGTTCGTGT
GTCTTGGTAAACATCTCTGTCTCGTCCCTTGTTGTTGTTGCCCCATCGTC
GGTCTCTGCCTTCCCGTGTGCGATAGTCTACATGCCCTTCTTATTCGTGC
TGTAATTTGAGTAACCTTCCCAGGTTCTTCGTACTATGGAAACATGTTGG
ATAAATCATACAATCGGGGCCGTTGGGGTTACTAGGGAATGGCGGTCGTT
CCTCCTGTAATTTCGCACTCCTCTTCTGGTCGGATTTTGCCGTAGCATCC
CAGAGCGCGCTACCAGTCTAGATGTAGATTGGTGGGGTGGGAGAGTCGAC
GCTGCTGCTGTATAACCACAGCTAAAGATAGATCTAGATGCAATGTGTGT
TCGTTCATAGTCCGGATCGCCAAGCAAGGTAGAACACATGTTGTAGGGTA
TGAATTCAATCAGACTGTCCGTCACTGCTGTATAGACTATATGACTCGAA
ACAAGCCCACCGGTTTCTCTCCACTCACTGACAAGACTCCTCCTCTAGCA
CATCCCGTTCGACTGCGGTTATTATAGGTATAACGGGTAGGGTCTTTCTG
TGTTTGTTTTTATTTTTCCCTCCCTCTCCTATGTAGTCTACTATTGCAAC
ACGTTGCCTCTTACAGTAGGAATACTTCAATTTTTTCGTGTTTCTGTCAA
AGGATCTTGCTGGCCGCACGAGAAAACCTCCATCAGCACCCGCGAGAGAG
TGGGTGTAGCGATTGCAAAGCTGCTGCGACGCCTCTGGTCAAAAGAACCA
AACAACCACAGGTTGGGCGGCGGGTGATGGTTGACTACGTTGGGCCTCAG
CAATCCCTCACGACAGCAGCCAGCCCCCGCTCTCTCGTTGGCAGCTGTGA
CTCTGACGCGGCCGACACAAATACAGCTACAGCAGTATTGTAGCTGTGCC
AGATTCTACGAAATCTACGCATACACGCAACCGGCGACTGGCGACCATTC
GGACCGCCTGGCCGACAGAGCAGAATATTGTTTTTTTGTATTTTGTCCAG
CCGCATTCCCAATCAAGACAGCAGTAGTTTTAACCCGAGAGACTAACTCG
CAGGAGCCACACATACACAGCAGTGTTCCAGAGGGACAACACACGCGTAC
AACACCTCCGGAGCCCGGGACATTAAGCAGGAAGCCGCAATACAAAGCAT
TGCCCCCGGTGCCGGCCGGACTTTGTGCCACAGAATCTGTAAAAAGCAAC
CAAGGGGTGTGTGTGTGTTGGGGTGGGAGATCCGGATCCTCCACACGATT
GTGTGTGCGCATTAGCCTCGTTTCGTGTTTTTGCCTCCCGCGGGAGACAA
GGGCAAGCGAGAGGCGGGACGGGTTTGGGATTCAGTTGGCGGTGGATCGG
CAGAGAGGGGAACACGAAGAACGAGTCGGTCCGCTGCACCCCGGGTGAGT
GAGCCCGTGTCGTCCTATAGCGACGTAGGACCTCGGGCCGACCGAGGCAA
ATGCGGTGGTATCATTGTTCGCCATTGTCTGTTCGCCGAACGGGCATCTG
GCCGCTGCGGTCCTCCCGATCTGTGTTGCACAGCCTATGCGTGCTGGTTG
CCTGGGAACGGAAATATTACCATTTATTTCCTGTACAGAGACCAACAGAG
AGATGTGGCTGCCGAGCGTATACTACTAGCTCTTCCTCGAGCCAAGGCGT
GAGTCATTGCTTGCAGCATGCAGAATCCTTGCCTAATAACTGCACCTACC
TGCAGATGCAACACCACAACAATTCTGCTGTGTGTTGTTTACAAGAAGTT
TTGTAGCATATAGCATCAGGACATCAGGATCCCGGGTGCCTCCGTCAAAG
AAAATCAAGTGTGTTGATGCTTCCGAAAGGGATCGTTGCATGGGCAGATG
GACAGCCTTATTACTTCAACATCCTGGGAATTGCTGCAGGTATCGGCGCA
CCCAAGAGGCAGCCCGACATACATACTTACTTACACGCTCTTTTTCCGTT
GCGCCTTCGGGTCTCGTCAACGAAAACATGCAATCTCCAGGTCTCACATC
ACCGCACTTTACAGAAGACACATCAAAGCAGCAGGAGACGATAGTTGATA
GACTGGAGTGTGTAAAGCATAAGTTTATCACGCGACAACTCTGTTGATGC
CTGCTGTGCACCCTACGCATGTACGCATGCAGGCCTCTCCTCTTTGCGCG
GAGCAGCAGCGGTGTAATTCGTCCATGCCATGACACGGAGCGGAACAACC
TTGTTTTCCCGTTCACTGCGTTTAGCGTGTAGTCTAATGTACAAGTCTCG
CCAAACCGTTCCTGCAACTGCTGTTTATTTGACAGCTCTTTGTTTTACAC
AGCAGCAGTAGCAGCAGCAGTGGTGTACACAGTACGTAAGAGGCGGGGAG
ATGGCACCCCACCTAGACCGACTTTCCGAGGTGGATTCGATTGCTCCACA
GGCAAGGGGGGGGTGCGAAGATAGCCCGACACGTTCACGTCTGTCTGCAG
CAAGCCCTCGACGAGATGTTGTTCCACAACCACCATCATCTTGGTTGTTG
GCACAATCAATCGGGGCTAGCTGAGGAGCAAGCAGGCTTTGAACATTGGT
CTACATGTACGGGGGGTGTCATCTCTCCGCCTCTTACGGTGGTGTATATA
CTGTAGGAAGGCGAAATAAATGCACAGGAGGTATGTAGAGACTATGTAGC
AATGAGGCAACAAATTACAAAGAAAGGTGTACTAAACTGTACTGTGAAGA
AGTGTTTTTAGGAAATGTCTACAGCAGCAGCAGCATTTACGTACGTACGT
ATGTTACTGCTGTACAGCAGCAGTTGATCTACTTCAAACTGGGAAAGGCC
TACTATCCGGAGGGAGATTGGTATCGACGCATGGACTCATCCCTCACCGT
CCCCAACAGACAACACGCGAGCGACAGGAAACTAGACTATAGGACAGAGA
TAAAAAGCAAAGCGTATCGTCGAGAAAAGTAGTCACGATTAGTAACGTAA
GAGTTTCTTTTTGACTGTGGCATGGATGCCCACGAGGACTAAAGGACGGC
GACAATAGACGGACCGAATCAACGGCCAATTGAGAGAGACAGAGACAGAC
AGTCAGACAGACAGTCAGACAGACAGACAGGCAGGCAGACAGAGGGATAG
AGAAAAACAGAGAAGAGAGGCAGGTGTCAGTCATGGCGGGCCAAGATGGA
GAAGAAGAAGTAAACAAAATATTCAGCAACCAACTTGCACCCAAGTAACC
CAATCAGAATTTGTTTGAATTTTTCCTAGAATTTACTCCACCGAAACTAT
CCCGACCGCAATCTCCGAATAGATATGCTCACTATTCACCCATCGTATCT
GTTGTGCTGCGAATATGAATATTCCAACTGATTTTTCCGGGTCCTCCAAT
GCTCCCCGATCTGTCGCAATTTTACCCTCTCTTGGCTAACAGTTGCGTGC
GACCACGCAGAGGGCGTCGTCAGTCAGTTGGACTATGCAGTGTACTGGTG
GTGGGAGGTTTTGAGCATAGATAGGTCGAAACGGTTTTGAATTTGGACAC
AAACAAGACAACATCGCCTTTCGAAATATGTAATATTTCAATATTTCGCC
CCCCGCGCTGCCTCGCTGGTCATGACGATTCCAGCAACTGCTTGTCCGAA
AAACCCCTCTCCAACGATTCATAATTCAAAGCAATTCCTCTCTTGTAAGT
GTATGTAGTTGCAGCAGTCCGTTCGTTTTTTGTCTCATATCGCTTAAAAT
CATCAAGGCTGAGACCCTGGAGTTTGTGTCCTGTACACAAGCAGTGCGGT
GTACGTGTTTCGCACTTGACTGCGCCGAACTCAAGAGGGACGCGTTCTGA
CCAAGTAGAACCACAAGAAAAGAGCACATCGAAGCGCGCGGTCACCATGA
GTACCATTTACCTTCATCCTCATCTCTCCTTACTTGTCGTCCCTACGGAG
GCATTGATGTGTGCGCTTGTGAGCCACGCAGGTTGCCGTCCCTCGCTGTT
TATCTTGATTTCGCTCAAGGCTTCTGCCACACGCTCCACGTGAACTAAAC
ATCTACCCGTGACCACCGCTGCTGCTGCTGCCGCGTACACTCCGCCCAGG
CGCAGACCAGGCAGTACAACAAAGCAGAGAGCATCCACTCGAGAGAATCG
AGAACGGCCCTGTACGGGGAGCGGTACACGGCAAGCGAGGGTCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:667911..674007+

>mRNA_Ecto-sp6_S_contig9.18061.1 ID=mRNA_Ecto-sp6_S_contig9.18061.1|Name=mRNA_Ecto-sp6_S_contig9.18061.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=774bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:667911..674007+ (Ectocarpus species6 EcLAC_371)
ATGCTGCGCTGGGCGGGATTCAGGCGCCAAGGCAGCGATGAACTCTTCAA
GATCGATGACAAGCGCCTGGGAGCGAGCGATGCCGTCGCCGCCGCTGTGA
AGGAGATTTGGACCAAAGTGGCCGCGGCATTCCCTGTCGTCGGGTACAGC
CAGGCAAGGACATGCTGTGCCAGATTCTACGAAATCTACGCATACACGCA
ACCGGCGACTGGCGACCATTCGGACCGCCTGGCCGACAGAGCAGAATATT
GTTTTTTTGTATTTTGTCCAGCCGCATTCCCAATCAAGACAGCAGTAGTT
TTAACCCGAGAGACTAACTCGCAGGAGCCACACATACACAGCAGTGTTCC
AGAGGGACAACACACGCGTACAACACCTCCGGAGCCCGGGACATTAAGCA
GGAAGCCGCAATACAAAGCATTGCCCCCGGTGCCGGCCGGACTTTGTGCC
ACAGAATCTGTAAAAAGCAACCAAGGGGTGTGTGTGTGTTGGGGTGGGAG
ATCCGGATCCTCCACACGATTGTGTGTGCGCATTAGCCTCGTTTCGTGTT
TTTGCCTCCCGCGGGAGACAAGGGCAAGCGAGAGGCGGGACGGGTTTGGG
ATTCAGTTGGCGGTGGATCGGCAGAGAGGGGAACACGAAGAACGAGTCGG
TCCGCTGCACCCCGGAAGAGAGGCAGGCGCAGACCAGGCAGTACAACAAA
GCAGAGAGCATCCACTCGAGAGAATCGAGAACGGCCCTGTACGGGGAGCG
GTACACGGCAAGCGAGGGTCGTGA
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