mRNA_Ecto-sp6_S_contig9.18054.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18054.1
Unique NamemRNA_Ecto-sp6_S_contig9.18054.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18054.1 vs. uniprot
Match: D8LM30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM30_ECTSI)

HSP 1 Score: 401 bits (1030), Expect = 2.510e-138
Identity = 226/253 (89.33%), Postives = 231/253 (91.30%), Query Frame = 1 
Query:    1 MTMSHTWPGNLRDRGQRTRDNKLLAAFAYEGRQRGSGAGGVGDDGCATVRTVLDSRADIGASMQDCNSSKEWTPFFSSTGEINDPLRVVAHAPAATLSGAKLRASPTTATTLSRELLPRALARKSASSRRPTHQGVQVESESENENDAEVAFSVPPNVKAVLRRCAAQSRDRVAGGTAAGCGGGTHTAQPAXXXXXXXXXXXXXXXXXXSRCEDRRAAFARGEQGDGSHFSAAGKTGRGSGSGGDGVTHGGSD 759
            MTMS+TWPGN  DRGQRTRD+KLLAAFAYEGRQRGSGAGGVGDDGCATVRTVLDSRADIGASMQDCNSSKEWTPFFSSTGEINDP RVVAHAPAA LSGAKLRASPTTATTLSRELLPRALARKSASSRRPTHQGVQVE+ES+NENDAEVAFSVPPNV+AVLRRCAAQSRDRVAGGTA      THTAQPAXXXXXX            SRCEDRRAAFARGEQGDGSHFSAAGKTGRGSGSGGDGVTHGGSD
Sbjct:    1 MTMSNTWPGNFNDRGQRTRDSKLLAAFAYEGRQRGSGAGGVGDDGCATVRTVLDSRADIGASMQDCNSSKEWTPFFSSTGEINDPFRVVAHAPAAALSGAKLRASPTTATTLSRELLPRALARKSASSRRPTHQGVQVENESDNENDAEVAFSVPPNVQAVLRRCAAQSRDRVAGGTAXXXXXXTHTAQPAXXXXXXTPSVTPTVAP--SRCEDRRAAFARGEQGDGSHFSAAGKTGRGSGSGGDGVTHGGSD 251
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM30_ECTSI2.510e-13889.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:620776..623621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size984
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_002680.1
Cds size984
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350522.367986-CDS-Ecto-sp6_S_contig9:620775..6208251682350522.367986-CDS-Ecto-sp6_S_contig9:620775..620825Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 620776..620825 +
1682350522.3791993-CDS-Ecto-sp6_S_contig9:622423..6225511682350522.3791993-CDS-Ecto-sp6_S_contig9:622423..622551Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 622424..622551 +
1682350522.3872147-CDS-Ecto-sp6_S_contig9:622815..6236211682350522.3872147-CDS-Ecto-sp6_S_contig9:622815..623621Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 622816..623621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18054.1prot_Ecto-sp6_S_contig9.18054.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 620776..623621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18054.1

>prot_Ecto-sp6_S_contig9.18054.1 ID=prot_Ecto-sp6_S_contig9.18054.1|Name=mRNA_Ecto-sp6_S_contig9.18054.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=328bp
MTMSHTWPGNLRDRGQRTRDNKLLAAFAYEGRQRGSGAGGVGDDGCATVR
TVLDSRADIGASMQDCNSSKEWTPFFSSTGEINDPLRVVAHAPAATLSGA
KLRASPTTATTLSRELLPRALARKSASSRRPTHQGVQVESESENENDAEV
AFSVPPNVKAVLRRCAAQSRDRVAGGTAAGCGGGTHTAQPAAAAAAAAAT
PSVTPTVAPSRCEDRRAAFARGEQGDGSHFSAAGKTGRGSGSGGDGVTHG
GSDGERGLVTGCDGLDAEEGGVGISVHDLEALLYDMGNESTSRRRPAFLA
DMGERSKSVSRMITTPFRRIRGTPKTP*
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mRNA from alignment at Ecto-sp6_S_contig9:620776..623621+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18054.1 ID=mRNA_Ecto-sp6_S_contig9.18054.1|Name=mRNA_Ecto-sp6_S_contig9.18054.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2846bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:620776..623621+ (Ectocarpus species6 EcLAC_371)
ATGACCATGTCCCACACATGGCCGGGAAATTTGAGGGACCGTGGCCAGAG
GTGGGTACAGGCAAACCTCTGTAATGCTTGCTCTCTCTGAGGGAAGCTGT
TAGGCGTTCTTTGTAGTTTCCTGCTTTGCTGTCGTTTTGGGCCCCGCAGC
AACCCTGGAAAAAAACTCTCGGTTCACCAGCGAGCGACGTGCAGACACCA
GCCGTTGTTACGTGCAACCGAGCTGCACAAGTTCGAAGAAAGTAGTTTTC
CGAAAGGAGCGAAGGAGACAGCGTTCCTTGTAGATCACCACCCTCTGTAG
CCATCCGAAGAAGCTGCCTATCTTTTCCCCCTGTTGGGCACGAAAATACT
GCTGGTGTACAGGCAGTTCAATTTGGATAATTTGACTTTTTAGAGGGAAG
ACCGGAGACAGCAAAGAGTAGACGCATCGAGCGTTCACCGCATGGAAGCC
ATGTGAAGGCAGGCAGGGGCATCTACATCATCGCCGTCATATCCGAAGGG
CGTCGGTATGTGCTTATAGTGCTCGCGACACAGCAGTATGAATCTCTGAC
AACATCAGCATCGACCTGGTCTCTCTCTCGGTCTTTTGGATCTCGGTCTT
TTGGATCACAGAATCACAGAATGCTCGCCATGCAAGTGTTGGCGCGGTCG
GTGTGATGGGCGGTGCGCCTAGCCTCTGCGTAAAAGACTCATGTACCCAT
CTGCTGGATGTGTGGGCGCATTGTTGGCGTATTTATAACCAAAGCCCGGC
AAGAATAGTGGTGGTGGTAGTGGTTGATTGGCTAGAGAGTACGGGGTACG
GGAGGGTTATTATTCTTGGCGAAATAAACCTTGCTTGCACCACATGCGCT
GCCGGATCATAGATCCGACGGGGGTTTAATATCCAGGGTTGGGGTTGTGT
GGGGAGGCAAGCACTATCGAAGCCATGAAGCACAACTTCTAGCCCGCGCT
TGAATTAGACTCGAGCTGGGAGACATACAGGGTTGACAGGGGCGGGAAAG
AACGTAGCGAAGTTGGGTGCGGAGCGCGTCGCGGTTCTGACAAGTACCGC
AGTACACAGAATCGAAAAAGAGGCTCCGCTTCGGGAAAACTTCTCCTGAT
AACGTAGATGCGTGCAGTATTCAAGACCGTCCGCTGCATGCGACGATTTA
GAACCAACGCACGTGTGCATATTGCATCCCAGATCCCAGACGTAGAGGAA
GTGCCAGAGAAAACGTGTGCCTATTTACTTCTACAAAAACACAACCATTT
AGATGGCCTCTATGCCCACAGATAGATAAGGGTTCGAGATCACTTAATTC
TTAGCGGAGCCTCACCCACTCGTCTGAGATCGGTCCGGTGTCATAAACCC
GATATTGTACGCAAGATATGCTCCAAGCGTACCGTTACATCTCGACCTCT
GCAGTTCGGCCCTGTGGAGCATACATATGGTGTTGCTGTTTGTGTGCACC
AAGGCTGCATGAATATTGCGGGAAGTTTTGCACTTCAAAGAGGATGACAT
TTACCGGCGTCCCGCGCAACAGAATGAACGCTAGCAGAGGGAAGACCCCC
CTGCGGCTGCAGGCCCTCCCTGCCTGCAATGTACAAACCCACCTTTGTTT
CGTCCTTTGTTGTGTACTACCTACCTTCGCTTCAACGCTGGCCCACAGGA
CTCGAGACAACAAGTTGCTTGCGGCATTCGCGTATGAGGGAAGGCAGCGA
GGTTCGGGGGCAGGCGGAGTTGGCGACGATGGTTGCGCAACGGTCCGGAC
CGTGCTCGACAGCCGTGCTGACATAGGTAAGTCTCGGCCTCCCTCGCGCG
CCGGGTGTTCATTCAAGCACATGGCCGGGATAACCATTACGCGGTTAACC
AGTGCCTTCGGTCACAGCCAACCCCCCTCCCCTGCTTTGTGTCGTGAACA
CACGCAGCACTGATGATGCTGCTCTGTGTAGGAGTCACCATAGCAGTGAT
GGGTCTGTAGGTGCCGCATTTTAACGAAAATCGAATAAATTTGGTGCCGT
AGAATCTTTTTTCTGCCCTTGCGCCTGCCATCTCTCCCAGGCGCATCGAT
GCAAGACTGCAACAGCTCAAAGGAATGGACCCCTTTCTTCTCCTCAACGG
GCGAGATCAACGATCCTTTACGTGTCGTCGCCCACGCACCGGCTGCAACT
TTGAGCGGCGCCAAGCTCAGAGCTTCCCCGACGACAGCTACCACCCTGAG
CAGAGAGCTTCTTCCCAGAGCTCTTGCGAGAAAGTCGGCTTCGAGCCGGA
GGCCCACCCACCAGGGTGTCCAGGTCGAGAGCGAGAGCGAAAACGAAAAC
GACGCCGAGGTTGCGTTCTCCGTCCCGCCCAACGTCAAGGCCGTCCTCAG
GCGTTGCGCTGCCCAGAGTCGAGATCGGGTGGCGGGCGGCACCGCCGCGG
GGTGTGGGGGGGGCACGCATACCGCTCAGCCCGCGGCGGCGGCGGCGGCG
GCGGCGGCCACGCCGTCCGTGACGCCAACGGTAGCGCCTTCCCGATGCGA
GGACCGCCGTGCCGCCTTCGCCCGTGGTGAGCAAGGCGACGGAAGTCACT
TCTCTGCCGCTGGCAAGACCGGAAGAGGCAGCGGTAGCGGCGGCGATGGT
GTCACGCACGGGGGGAGTGATGGTGAGCGGGGGCTGGTTACCGGTTGTGA
TGGTCTCGACGCTGAGGAGGGCGGCGTTGGCATTTCTGTGCACGATCTGG
AGGCATTGCTGTATGACATGGGGAACGAGTCGACCTCTAGGAGGAGACCT
GCGTTTCTGGCTGATATGGGCGAGAGGTCGAAGTCGGTTTCGAGAATGAT
CACCACCCCGTTCCGCCGAATACGGGGAACGCCCAAGACCCCATAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:620776..623621+

>mRNA_Ecto-sp6_S_contig9.18054.1 ID=mRNA_Ecto-sp6_S_contig9.18054.1|Name=mRNA_Ecto-sp6_S_contig9.18054.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=984bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:620776..623621+ (Ectocarpus species6 EcLAC_371)
ATGACCATGTCCCACACATGGCCGGGAAATTTGAGGGACCGTGGCCAGAG
GACTCGAGACAACAAGTTGCTTGCGGCATTCGCGTATGAGGGAAGGCAGC
GAGGTTCGGGGGCAGGCGGAGTTGGCGACGATGGTTGCGCAACGGTCCGG
ACCGTGCTCGACAGCCGTGCTGACATAGGCGCATCGATGCAAGACTGCAA
CAGCTCAAAGGAATGGACCCCTTTCTTCTCCTCAACGGGCGAGATCAACG
ATCCTTTACGTGTCGTCGCCCACGCACCGGCTGCAACTTTGAGCGGCGCC
AAGCTCAGAGCTTCCCCGACGACAGCTACCACCCTGAGCAGAGAGCTTCT
TCCCAGAGCTCTTGCGAGAAAGTCGGCTTCGAGCCGGAGGCCCACCCACC
AGGGTGTCCAGGTCGAGAGCGAGAGCGAAAACGAAAACGACGCCGAGGTT
GCGTTCTCCGTCCCGCCCAACGTCAAGGCCGTCCTCAGGCGTTGCGCTGC
CCAGAGTCGAGATCGGGTGGCGGGCGGCACCGCCGCGGGGTGTGGGGGGG
GCACGCATACCGCTCAGCCCGCGGCGGCGGCGGCGGCGGCGGCGGCCACG
CCGTCCGTGACGCCAACGGTAGCGCCTTCCCGATGCGAGGACCGCCGTGC
CGCCTTCGCCCGTGGTGAGCAAGGCGACGGAAGTCACTTCTCTGCCGCTG
GCAAGACCGGAAGAGGCAGCGGTAGCGGCGGCGATGGTGTCACGCACGGG
GGGAGTGATGGTGAGCGGGGGCTGGTTACCGGTTGTGATGGTCTCGACGC
TGAGGAGGGCGGCGTTGGCATTTCTGTGCACGATCTGGAGGCATTGCTGT
ATGACATGGGGAACGAGTCGACCTCTAGGAGGAGACCTGCGTTTCTGGCT
GATATGGGCGAGAGGTCGAAGTCGGTTTCGAGAATGATCACCACCCCGTT
CCGCCGAATACGGGGAACGCCCAAGACCCCATAG
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