mRNA_Ecto-sp6_S_contig9.18042.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18042.1 vs. uniprot
Match: A0A6H5KCK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK6_9PHAE) HSP 1 Score: 343 bits (881), Expect = 1.080e-113 Identity = 222/241 (92.12%), Postives = 228/241 (94.61%), Query Frame = 3
Query: 339 MSLPLLSVRANLSSSALGSSLRHSASGRCVRNVVCSSFRRRRSSSDSKCNRPPTS-WSRRGRASSAVMVTRSQAPALLQARQLSSAASAAAPTLLFGDTIIVTKRCAERLNELREAKTQPDLKLRLSVEGGGCSGFQYKFSLEDAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEFERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 1058
MSLPLLSVRANLSSSALGSSLRH ASGRCVRN+ RRR SSDS+CNRPPTS WSRRGRA SAVMV+RS +P LLQ+RQLSSAASAAAPTLLFGDTIIVTKRCAERLNELR+AK QPDLKLRLSVEGGGCSGFQYKFSLEDAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEFERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD
Sbjct: 1 MSLPLLSVRANLSSSALGSSLRHPASGRCVRNLAS----RRRCSSDSRCNRPPTSCWSRRGRAPSAVMVSRSPSPILLQSRQLSSAASAAAPTLLFGDTIIVTKRCAERLNELRQAKAQPDLKLRLSVEGGGCSGFQYKFSLEDAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEFERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 237
BLAST of mRNA_Ecto-sp6_S_contig9.18042.1 vs. uniprot
Match: D7G8E7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E7_ECTSI) HSP 1 Score: 181 bits (460), Expect = 6.940e-52 Identity = 110/174 (63.22%), Postives = 117/174 (67.24%), Query Frame = 3
Query: 537 MVTRSQAPALLQARQLSSAASAAAPTLLFGDTIIVTKRCAERLNELREAKTQPDLKLRLSVEGGGCSGFQYKFSLEDAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEFERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 1058
MVTRSQAPALLQ+RQLSSAASAAAPT+LFGDTIIVTKRCAE + + + + GGG G + L G EFERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD
Sbjct: 1 MVTRSQAPALLQSRQLSSAASAAAPTVLFGDTIIVTKRCAE-VKRAQRGQDAAGPEAPAFGGGGGVLGVSVQVLLGRRGGGS---------------------------EFERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 146
BLAST of mRNA_Ecto-sp6_S_contig9.18042.1 vs. uniprot
Match: W7UC88_9STRA (Iron-sulfur cluster assembly 2 mitochondrial-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UC88_9STRA) HSP 1 Score: 147 bits (372), Expect = 2.280e-38 Identity = 80/161 (49.69%), Postives = 103/161 (63.98%), Query Frame = 3
Query: 576 RQLSSAASAAAPTLLFGDTIIVTKRCAERLNELREAKTQPDLKLRLSVEGGGCSGFQYKFSLEDAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEFERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 1058
RQLSS A + +P + + ++VT C +R+ L+ + +LKLRLSVEGGGCSGF Y F++ED + R+GA +VVD SLEFV+G+TVDF EDMMRSAFAV++NP+SESACGCGSSFA+KNFEKNPA+D
Sbjct: 57 RQLSSNAVSNSPQMSLDEDVVVTNACIKRIKALQVKTGKENLKLRLSVEGGGCSGFTYTFTMEDGP------------------------VEDDDKVYGREGAQVVVDEGSLEFVRGSTVDFTEDMMRSAFAVVSNPLSESACGCGSSFAMKNFEKNPAID 193
BLAST of mRNA_Ecto-sp6_S_contig9.18042.1 vs. uniprot
Match: A0A835ZPC5_9STRA (Fe-S_biosyn domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPC5_9STRA) HSP 1 Score: 148 bits (374), Expect = 3.690e-38 Identity = 82/162 (50.62%), Postives = 103/162 (63.58%), Query Frame = 3
Query: 576 RQLSSAASAAAPTLLFGDTIIVTKRCAERLNELREAKT-QPDLKLRLSVEGGGCSGFQYKFSLEDAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEFERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 1058
RQ S ++++ D +IVTK CAER+N+LR+ + L+LRLSVEGGGCSGFQY F+++D G FERDGA +V+D SL FVKGATVDF++DMMR+AF+VLNNP SE+ACGCGSSFA+K FE NPA D
Sbjct: 92 RQSESTSNSSIGPQSLDDAVIVTKSCAERINQLRKRRGGDAPLRLRLSVEGGGCSGFQYTFTMDDGTGDEEIDTPDII--------------------FERDGAQVVIDEVSLGFVKGATVDFQQDMMRAAFSVLNNPNSENACGCGSSFAVKAFEANPARD 233
BLAST of mRNA_Ecto-sp6_S_contig9.18042.1 vs. uniprot
Match: A0A4D9DG01_9STRA (Fe-S_biosyn domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DG01_9STRA) HSP 1 Score: 139 bits (350), Expect = 4.340e-36 Identity = 73/144 (50.69%), Postives = 93/144 (64.58%), Query Frame = 3
Query: 627 DTIIVTKRCAERLNELREAKTQPDLKLRLSVEGGGCSGFQYKFSLEDAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEFERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 1058
+ ++VT C +R+ L+ + +LKLRLSVEGGGCSGF Y F++ED + R+GA +VVD SLEFV+G+TVDF EDMMRSAFAV++NP+SESACGCGSSFA+KNFEKNPA+D
Sbjct: 5 EDVVVTNACIKRIKALQVKTGKENLKLRLSVEGGGCSGFTYTFTMEDGP------------------------VEDDDKVYGREGAQVVVDEGSLEFVRGSTVDFTEDMMRSAFAVVSNPLSESACGCGSSFAIKNFEKNPAID 124
BLAST of mRNA_Ecto-sp6_S_contig9.18042.1 vs. uniprot
Match: A0A7S2RUW2_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RUW2_9STRA) HSP 1 Score: 134 bits (337), Expect = 9.340e-34 Identity = 72/144 (50.00%), Postives = 90/144 (62.50%), Query Frame = 3
Query: 627 DTIIVTKRCAERLNELREAKTQPDLKLRLSVEGGGCSGFQYKFSLEDAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEFERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 1058
+ I+VTK CA R+ EL++ + +KLRL+VEGGGCSGFQY+F ++ FERDGA +V+D SLEFV GATVDF E+M+RS+F V+NNP SESACGCGSSFALK F NPA+D
Sbjct: 39 EDIVVTKSCARRILELQKESSSEYVKLRLTVEGGGCSGFQYQFHMDSEP-----------------------VDEEEDSVFERDGASVVIDEASLEFVTGATVDFVEEMIRSSFVVVNNPNSESACGCGSSFALKAFSDNPAVD 159
BLAST of mRNA_Ecto-sp6_S_contig9.18042.1 vs. uniprot
Match: A0A7S2CX78_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CX78_9STRA) HSP 1 Score: 131 bits (329), Expect = 1.390e-32 Identity = 72/144 (50.00%), Postives = 89/144 (61.81%), Query Frame = 3
Query: 633 IIVTKRCAERLNELRE--AKTQPDLKLRLSVEGGGCSGFQYKFSLEDAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEFERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 1058
+I+TK CA R+ L A T P LRLSVEGGGCSGFQY F L+ + FERDG+ +V D +SLEFV+G+T+DF ++M+RS+FAV+NNP SESACGCGSSFALK+F NPALD
Sbjct: 42 LIITKSCARRIANLNAHAADTSPSKYLRLSVEGGGCSGFQYSFELDGSE------------------------LGPEDLTFERDGSRVVTDESSLEFVRGSTIDFTQEMIRSSFAVVNNPNSESACGCGSSFALKSFSDNPALD 161
BLAST of mRNA_Ecto-sp6_S_contig9.18042.1 vs. uniprot
Match: A0A7S3NJQ0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJQ0_9STRA) HSP 1 Score: 126 bits (317), Expect = 4.660e-31 Identity = 71/144 (49.31%), Postives = 88/144 (61.11%), Query Frame = 3
Query: 627 DTIIVTKRCAERLNELREAKTQPDLKLRLSVEGGGCSGFQYKFSLEDAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEFERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 1058
D +IVT A+R+ L+ + +LRL V+GGGCSGFQY F+ E A F RDG +VVD TSLEFV+GATVD++E+M+RSAF V+NNP SESACGCGSSFALKNF+ NPA+D
Sbjct: 26 DGLIVTAAAAKRIAVLKTNDGEAS-RLRLGVDGGGCSGFQYTFTTEAATAKLAEDDSV----------------------FSRDGHDVVVDETSLEFVRGATVDYQEEMIRSAFVVINNPNSESACGCGSSFALKNFDSNPAID 146
BLAST of mRNA_Ecto-sp6_S_contig9.18042.1 vs. uniprot
Match: A0A7S1Z1W8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z1W8_TRICV) HSP 1 Score: 124 bits (311), Expect = 3.980e-30 Identity = 83/145 (57.24%), Postives = 105/145 (72.41%), Query Frame = 3
Query: 627 DTIIVTKRCAERLNELREAKTQPD-LKLRLSVEGGGCSGFQYKFSLEDAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEFERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 1058
D ++VT CA R+ +L + D + LR+ V+ GGCSGFQYKF LE AG XXXXXXXXXXXXXXXX F +DGA +V+D +SLE ++G+TVDF +M+RS+FAV+ NP SESACGCGSSFA+KNFE+NPA+D
Sbjct: 9 DGVVVTASCAARILQLSSKRDDADSVYLRVYVDAGGCSGFQYKFELEGEAGESXXXXXXXXXXXXXXXXVVGIDPDEDV-VFVKDGARVVIDRSSLELIRGSTVDFVREMIRSSFAVIGNPQSESACGCGSSFAVKNFEENPAVD 152
BLAST of mRNA_Ecto-sp6_S_contig9.18042.1 vs. uniprot
Match: A0A7S2G7Q7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G7Q7_9STRA) HSP 1 Score: 120 bits (300), Expect = 3.650e-29 Identity = 64/124 (51.61%), Postives = 78/124 (62.90%), Query Frame = 3
Query: 687 TQPDLKLRLSVEGGGCSGFQYKFSLEDAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEFERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 1058
T P LRLSVEGGGCSGFQY F L+ + FERDG+ +V D +SLEFV+G+T+DF ++M+RS+FAV+NNP SESACGCGSSFALK+F NPALD
Sbjct: 6 TSPSKYLRLSVEGGGCSGFQYSFELDGSE------------------------LGPEDLTFERDGSRVVTDESSLEFVRGSTIDFTQEMIRSSFAVVNNPNSESACGCGSSFALKSFSDNPALD 105 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig9.18042.1 >prot_Ecto-sp6_S_contig9.18042.1 ID=prot_Ecto-sp6_S_contig9.18042.1|Name=mRNA_Ecto-sp6_S_contig9.18042.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=241bp MSLPLLSVRANLSSSALGSSLRHSASGRCVRNVVCSSFRRRRSSSDSKCNback to top mRNA from alignment at Ecto-sp6_S_contig9:513314..519230- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig9.18042.1 ID=mRNA_Ecto-sp6_S_contig9.18042.1|Name=mRNA_Ecto-sp6_S_contig9.18042.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5917bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:513314..519230- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:513314..519230- >mRNA_Ecto-sp6_S_contig9.18042.1 ID=mRNA_Ecto-sp6_S_contig9.18042.1|Name=mRNA_Ecto-sp6_S_contig9.18042.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=723bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:513314..519230- (Ectocarpus species6 EcLAC_371)back to top |