mRNA_Ecto-sp6_S_contig9.18041.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18041.1
Unique NamemRNA_Ecto-sp6_S_contig9.18041.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18041.1 vs. uniprot
Match: D7G8E8_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E8_ECTSI)

HSP 1 Score: 581 bits (1497), Expect = 1.730e-205
Identity = 379/415 (91.33%), Postives = 388/415 (93.49%), Query Frame = 1 
Query:    1 IVRLEGRWASAGSMEPYVGVYSIAGKKAHDPLWKNQDAGLVIAPLDRRQGQALFAIFDGHGKNGGQASRECMERLPKHLASASSQSGSPASALRRSCQRLHHDLATGVAGDCGRSGTTLCAAVLTGRRLTVANVGDSGCLRLSRSTAAXXXXXXXXXXXXXXXXIPGKAALASDRGTPDVVDKAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVTERLSRDHKPESKGELERIRAAGGIVFPLPRSGSGGXXXXXXXXXXXXXXXXXXXXXXXXVARGIAAGIPRVWTASGDGPGLAMSRSIGDKARTRASVGVTYEPEITEFDLDPRSDVMLVFASDGVWDVLSAEDIRKVRAFKPLRVRRNVFNEVLIIYFSRR-KRYRLQYESRCTHGSKHGSIHGGSGG 1242
            +VRLEGRWASAGS EP VG+YSIAG+KAHDPLWKNQDAGLVIAP DRR+GQALFAIFDGHGKNGGQASRECMERLPKHLASASSQSGSPASALRRSCQRLHHDLATGVAGDCGRSGTTLCAAVL GRRLTVANVGDSGCLRLSRSTAA  XXXXXXXXXXXXX IPGKAALASDRGTPDVVDKAGG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVTERLSRDHKPESKGELERIRAAGGIVFPLPRSGSGGXXXXXXXXXXXXXXX          ARGIAAGIPRVWTASGDGPGLAMSRSIGDK     SVGVTYEPEITEFDLD RSDVMLVFASDGVWDVLSAEDIRKVRAFKPLRVRRNVFNEVL+++ S+R KRYRLQ+ESRCTH SKHGSIHGGSGG
Sbjct:    1 MVRLEGRWASAGSTEPNVGIYSIAGEKAHDPLWKNQDAGLVIAPFDRREGQALFAIFDGHGKNGGQASRECMERLPKHLASASSQSGSPASALRRSCQRLHHDLATGVAGDCGRSGTTLCAAVLAGRRLTVANVGDSGCLRLSRSTAAASXXXXXXXXXXXXX-IPGKAALASDRGTPDVVDKAGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVTERLSRDHKPESKGELERIRAAGGIVFPLPRSGSGGXXXXXXXXXXXXXXXEGSKKGLKTAARGIAAGIPRVWTASGDGPGLAMSRSIGDKMAH--SVGVTYEPEITEFDLDKRSDVMLVFASDGVWDVLSAEDIRKVRAFKPLRVRRNVFNEVLLLFVSQRGKRYRLQHESRCTHRSKHGSIHGGSGG 412
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18041.1 vs. uniprot
Match: A0A835ZAZ3_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAZ3_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.090e-13
Identity = 54/137 (39.42%), Postives = 69/137 (50.36%), Query Frame = 1 
Query:  673 LVTERLSRDHKPESKGELERIRAAGGIVFPLPRSGSGGXXXXXXXXXXXXXXXXXXXXXXXXVARGIAAGIPRVWTASGDGPGLAMSRSIGDKARTRASVGVTYEPEITEFDLDPRS-DVMLVFASDGVWDVLSAED 1080
            LV E LS DHKP+++ E ERI AAGG VF +                                      G PRVW    D PGLAMSRS+GDK    A  GV+ EPE    +LDP + DV+L+ A+DG+W+ +S E+
Sbjct:  228 LVAEPLSVDHKPDAEAERERILAAGGRVFAVEYEDG-------------------------------LDGPPRVWLGHMDVPGLAMSRSLGDKVAHTA--GVSSEPEFFTRELDPSAGDVLLILATDGLWEFMSNEE 331
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18041.1 vs. uniprot
Match: A0A0D2MZT2_9CHLO (Protein-serine/threonine phosphatase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MZT2_9CHLO)

HSP 1 Score: 77.4 bits (189), Expect = 1.440e-11
Identity = 51/145 (35.17%), Postives = 65/145 (44.83%), Query Frame = 1 
Query:  673 LVTERLSRDHKPESKGELERIRAAGGIVFPLPRSGSGGXXXXXXXXXXXXXXXXXXXXXXXXVARGIAAGIPRVWTASGDGPGLAMSRSIGDKARTRASVGVTYEPEITEFDLDPRSDVMLVFASDGVWDVLSAEDIRKVRAFKP 1107
            L+   L+ DH+P    E  R+ AAGG V P                                +  G   G PRVW      PGL +SRS+GD     A+VG T EPEI+   L+P  D  +V ASDGVWDVL+ E +  + A  P
Sbjct:  502 LIARPLTLDHRPRRLSERLRVEAAGGRVQPKQ------------------------------LPSGRLVGEPRVWLQQVAAPGLLLSRSLGDLMA--ATVGCTSEPEISYVTLEPERDQFVVLASDGVWDVLTNEQVCDIVAESP 614
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18041.1 vs. uniprot
Match: I7MJK6_TETTS (Protein phosphatase 2c n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7MJK6_TETTS)

HSP 1 Score: 77.4 bits (189), Expect = 1.640e-11
Identity = 52/136 (38.24%), Postives = 65/136 (47.79%), Query Frame = 1 
Query:  676 VTERLSRDHKPESKGELERIRAAGGIVFPLPRSGSGGXXXXXXXXXXXXXXXXXXXXXXXXVARGIAAGIPRVWTASGDGPGLAMSRSIGDKARTRASVGVTYEPEITEFDLDPRSDVMLVFASDGVWDVLSAEDI 1083
            V   L+RDHKP  + E ERI   GG +                                     G   G  RVW  + + PGLAMSRSIGD   T  SVGVT+EPEI EFD+D + D  ++ ASDGVW+ +  E+I
Sbjct:  740 VPRALTRDHKPNIQTEAERIIQCGGRIDTFRDQ------------------------------EGNHLGPLRVWLKTENIPGLAMSRSIGDNLAT--SVGVTWEPEIFEFDID-KDDKFMIVASDGVWEFIENEEI 842
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18041.1 vs. uniprot
Match: A0A383VME8_TETOB (Protein-serine/threonine phosphatase n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VME8_TETOB)

HSP 1 Score: 77.0 bits (188), Expect = 1.890e-11
Identity = 49/132 (37.12%), Postives = 63/132 (47.73%), Query Frame = 1 
Query:  688 LSRDHKPESKGELERIRAAGGIVFPLPRSGSGGXXXXXXXXXXXXXXXXXXXXXXXXVARGIAAGIPRVWTASGDGPGLAMSRSIGDKARTRASVGVTYEPEITEFDLDPRSDVMLVFASDGVWDVLSAEDI 1083
            L+ DH+P    E ERI AAG  V P                                +  G   G PR+W  +  GPGL +SRS+GD   T A+VG T +PE++   L P  D +LV ASDGVWDVL+ E +
Sbjct:  509 LTIDHRPRRDSERERIEAAGARVAPK------------------------------RLPSGRTVGEPRLWLQNAHGPGLLLSRSLGDL--TAATVGCTSDPEVSFTTLRPGVDHVLVMASDGVWDVLTNEQV 608
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18041.1 vs. uniprot
Match: A0A835YZ58_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ58_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.890e-11
Identity = 49/133 (36.84%), Postives = 66/133 (49.62%), Query Frame = 1 
Query:  685 RLSRDHKPESKGELERIRAAGGIVFPLPRSGSGGXXXXXXXXXXXXXXXXXXXXXXXXVARGIAAGIPRVWTASGDGPGLAMSRSIGDKARTRASVGVTYEPEITEFDLDPRSDVMLVFASDGVWDVLSAEDI 1083
            +L+ DHKP    E +RI A+GG+V P P                                RG      RVW  +GDGPGLAMSRS+GD    +  +GVT+EPE+ +  L    D +LV  SDG+WD+L  E++
Sbjct:  385 QLTADHKPNVDSERQRILASGGLVGPTPERA------VMNCQGGAPLAGAAAAAAEGGARRGRLPS--RVWMPAGDGPGLAMSRSLGDLVAHQ--IGVTHEPEVCQRVLS-AGDRVLVVGSDGIWDMLPNEEV 506
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18041.1 vs. uniprot
Match: A0A1R2CT32_9CILI (PPM-type phosphatase domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CT32_9CILI)

HSP 1 Score: 75.1 bits (183), Expect = 4.520e-11
Identity = 54/139 (38.85%), Postives = 66/139 (47.48%), Query Frame = 1 
Query:  676 VTERLSRDHKPESKGELERIRAAGGIVFPLPRSGSGGXXXXXXXXXXXXXXXXXXXXXXXXVARGIAAGIPRVWTASGDGPGLAMSRSIGDKARTRASVGVTYEPEITEFDLDPRSDVMLVFASDGVWDVLSAEDIRKV 1092
            V+  LSRDHKP+ + E  RI   GG VF                                    G   G  RVW    + PGLAMSRS+GD     ASVGV+ EPEI E+DL  + D  LV  SDGV++ LS E+I K+
Sbjct:  273 VSVSLSRDHKPDLEEEAARIARCGGRVFSYTDE------------------------------EGNPLGPARVWLKDQNTPGLAMSRSLGDSVA--ASVGVSSEPEILEYDLTGQ-DKFLVIGSDGVFEFLSNEEIVKL 378
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18041.1 vs. uniprot
Match: A0A1R2B349_9CILI (PPM-type phosphatase domain-containing protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2B349_9CILI)

HSP 1 Score: 75.1 bits (183), Expect = 4.640e-11
Identity = 53/135 (39.26%), Postives = 66/135 (48.89%), Query Frame = 1 
Query:  688 LSRDHKPESKGELERIRAAGGIVFPLPRSGSGGXXXXXXXXXXXXXXXXXXXXXXXXVARGIAAGIPRVWTASGDGPGLAMSRSIGDKARTRASVGVTYEPEITEFDLDPRSDVMLVFASDGVWDVLSAEDIRKV 1092
            LSRDHKP+SK E ERI  +GG V                                     G  AG  RVW  + D PGLAMSRS+GD     ASVGV  +PEI E  L P  D  ++ ASDGV++ +S E+I ++
Sbjct:  268 LSRDHKPDSKDESERIYKSGGRVEAYQDE------------------------------NGNPAGPARVWLKNQDIPGLAMSRSLGDGVA--ASVGVICDPEILEIKLVPE-DKFIIIASDGVFEFISNEEIVRI 369
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18041.1 vs. uniprot
Match: A0A077ZYC3_STYLE (Protein phosphatase 2c containing protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A077ZYC3_STYLE)

HSP 1 Score: 75.9 bits (185), Expect = 5.480e-11
Identity = 54/135 (40.00%), Postives = 63/135 (46.67%), Query Frame = 1 
Query:  688 LSRDHKPESKGELERIRAAGGIVFPLPRSGSGGXXXXXXXXXXXXXXXXXXXXXXXXVARGIAAGIPRVWTASGDGPGLAMSRSIGDKARTRASVGVTYEPEITEFDLDPRSDVMLVFASDGVWDVLSAEDIRKV 1092
            L+ DHKPE K E ERI   GG +                                     G   G  RVW  S D PGLAMSRS+GD  R   SVGVT EPE  EF L   +D  +V ASDGVW+ LS ED+ ++
Sbjct:  959 LNIDHKPELKEEAERIIKRGGRIDSF----------------------------RDYYNNGEPIGPQRVWLQSEDIPGLAMSRSMGD--RVAHSVGVTAEPETKEFTLS-LNDKFIVIASDGVWEFLSNEDVAQI 1062
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18041.1 vs. uniprot
Match: A0A1R2D4K4_9CILI (PPM-type phosphatase domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2D4K4_9CILI)

HSP 1 Score: 74.7 bits (182), Expect = 7.240e-11
Identity = 52/143 (36.36%), Postives = 65/143 (45.45%), Query Frame = 1 
Query:  685 RLSRDHKPESKGELERIRAAGGIVFPLPRSGSGGXXXXXXXXXXXXXXXXXXXXXXXXVARGIAAGIPRVWTASGDGPGLAMSRSIGDKARTRASVGVTYEPEITEFDLDPRSDVMLVFASDGVWDVLSA-EDIRKVRAFKPL 1110
            RL+ D +P  K ELERI+ AGG V  L                                  G+  G  RVW  +G  PGLAMSRSIGD       +GV   P    F  D  +D+ LV ASDG+WDV++  E I  +  F+PL
Sbjct:  212 RLTIDQRPNIKEELERIKKAGGKVQQLSNE------------------------------NGVKIGPYRVWKKTGTLPGLAMSRSIGDAIGKE--IGVISTPMCNSFMFDKSTDLFLVIASDGIWDVMNCTEVINFIDKFRPL 322
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8E8_ECTSI1.730e-20591.33PPM-type phosphatase domain-containing protein n=1... [more]
A0A835ZAZ3_9STRA1.090e-1339.42Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A0D2MZT2_9CHLO1.440e-1135.17Protein-serine/threonine phosphatase n=1 Tax=Monor... [more]
I7MJK6_TETTS1.640e-1138.24Protein phosphatase 2c n=1 Tax=Tetrahymena thermop... [more]
A0A383VME8_TETOB1.890e-1137.12Protein-serine/threonine phosphatase n=1 Tax=Tetra... [more]
A0A835YZ58_9STRA2.890e-1136.84Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A1R2CT32_9CILI4.520e-1138.85PPM-type phosphatase domain-containing protein n=1... [more]
A0A1R2B349_9CILI4.640e-1139.26PPM-type phosphatase domain-containing protein n=2... [more]
A0A077ZYC3_STYLE5.480e-1140.00Protein phosphatase 2c containing protein n=1 Tax=... [more]
A0A1R2D4K4_9CILI7.240e-1136.36PPM-type phosphatase domain-containing protein n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:509149..512133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score583.9
Seed ortholog evalue5.7e-164
Seed eggNOG ortholog2880.D7G8E8
Model size1245
KEGG koko:K04403,ko:K14803,ko:K17500
KEGG Pathwayko04010,ko04064,ko04380,ko04620,ko04621,ko04668,ko05140,ko05145,ko05168,ko05169,map04010,map04064,map04380,map04620,map04621,map04668,map05140,map05145,map05168,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
Ec32 ortholog descriptionProtein phosphatase 2C (PP2C)-like domain
Ec32 orthologEc-14_002780.1
EC3.1.3.16
Cds size1245
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350521.1598415-CDS-Ecto-sp6_S_contig9:509148..5092291682350521.1598415-CDS-Ecto-sp6_S_contig9:509148..509229Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 509149..509229 +
1682350521.176804-CDS-Ecto-sp6_S_contig9:509921..5100151682350521.176804-CDS-Ecto-sp6_S_contig9:509921..510015Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 509922..510015 +
1682350521.1881711-CDS-Ecto-sp6_S_contig9:510350..5104561682350521.1881711-CDS-Ecto-sp6_S_contig9:510350..510456Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 510351..510456 +
1682350521.1965375-CDS-Ecto-sp6_S_contig9:510825..5115121682350521.1965375-CDS-Ecto-sp6_S_contig9:510825..511512Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 510826..511512 +
1682350521.2046845-CDS-Ecto-sp6_S_contig9:511856..5121331682350521.2046845-CDS-Ecto-sp6_S_contig9:511856..512133Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 511857..512133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18041.1prot_Ecto-sp6_S_contig9.18041.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 509149..512133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18041.1

>prot_Ecto-sp6_S_contig9.18041.1 ID=prot_Ecto-sp6_S_contig9.18041.1|Name=mRNA_Ecto-sp6_S_contig9.18041.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=415bp
IVRLEGRWASAGSMEPYVGVYSIAGKKAHDPLWKNQDAGLVIAPLDRRQG
QALFAIFDGHGKNGGQASRECMERLPKHLASASSQSGSPASALRRSCQRL
HHDLATGVAGDCGRSGTTLCAAVLTGRRLTVANVGDSGCLRLSRSTAAAS
SGSSASPSAAAAAAIPGKAALASDRGTPDVVDKAGGARGGGTSNRRRLRT
AEKLIAGAAAGEEAAPGGGSRGGGLVTERLSRDHKPESKGELERIRAAGG
IVFPLPRSGSGGGSGAGGVTGGAPPTAEGSKKGLKTVARGIAAGIPRVWT
ASGDGPGLAMSRSIGDKARTRASVGVTYEPEITEFDLDPRSDVMLVFASD
GVWDVLSAEDIRKVRAFKPLRVRRNVFNEVLIIYFSRRKRYRLQYESRCT
HGSKHGSIHGGSGG*
back to top

mRNA from alignment at Ecto-sp6_S_contig9:509149..512133+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18041.1 ID=mRNA_Ecto-sp6_S_contig9.18041.1|Name=mRNA_Ecto-sp6_S_contig9.18041.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2985bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:509149..512133+ (Ectocarpus species6 EcLAC_371)
ATCGTCAGGCTGGAGGGCCGGTGGGCGTCGGCTGGCTCAATGGAACCCTA
TGTTGGCGTTTACTCCATTGCAGGAAAGAAGGTGCGCAAGAGGTTCACCT
TTTTGATGAGAGCTTACGCTTCGATCCAGATGAACTTGATCGAAACTTGA
CATCTATATCTTTGTTTTCATGGAATAGTTCCTTCCTTGGGGTTGGCTTG
TGACACCAAGGACGATGATTCTTGAAAAGTATACAAGAAGATGAACTGGA
TCGAGATCAGAACAATTTTTTTAAGTGTAAGGACAATATTGACCGCTACA
TCGACGTCTCACAACACGATATTTTTGCATCTGTATGGCTGTCGTTCTAC
GTGCAAGTACTACGTGGTGTGACAGTCATGCTAACAAGGTACTGCCTACG
GTTCATACCTGTACGGGCGGCGGGGGGAGGAGAGCACTTGTTCGTGCACG
AATGCTATTCGTCTGCTCCCCAGTCATGTCTAGGTTCCAAATCTGTGGGT
CAAGGCGGTACAACGGGACTGTAATACTCGGAAGTCTCCAAACGGGACGG
AAAGAAACCATGACAAAACGGCAGAATATTTTTCTCTTTTTGAGTGCTGG
CCCTGCACGTGCCGAAGGAAGCACTTCGACGTTGGCCGCATCCGACGTTG
GCTCACACGATAGATCTTGCGCGGCATACGTCGGCGCACACGCACATTTT
CCGAGCATGGGCTTTTGTCGCCTGTTGCCTTGCCCATGTACTCCCTCGAA
TGGCCCCTGTGCGCACGTCGCAGGCGCATGACCCTTTATGGAAAAACCAG
GATGCTGGTCTTGTCATCGCACCCCTCGACCGGAGGCAGGGCCAAGCTCT
ATTTGCTATTTTTGATGGTGAGGGCGCTCAGCGTATTCATCATAAGATTG
GTTCGGCTCTATACAATTGCACTGCATCACTCGGAAGCAGCAACATTTTT
ACACAGACCGCTCATACGTCGCTGCACGACGCCAGGTAGCTAGCTCCCAG
CGTTTGGCGCAGCAACACGTTGGAAGAAAGAGAGTCGGCCGAGTGCTCCA
GGAACACGTCGACGTGCACGTAGATATAACTCTTCGCTCGAACTTCAGTC
ACGTCTTACACGCGACCTTCTCTAGACCCTGCTCTTACGACGAGATCTCA
ACAATAGAAACCACGTCGTGGCGCTTACCGTACCACGCCTTGCGCTGTAA
AGGTCACGGGAAGAACGGGGGGCAAGCATCTCGCGAGTGCATGGAACGCC
TGCCCAAGCACCTGGCGTCTGCTTCTTCTCAATCTGGGAGTCCCGCGTCG
GCGCTCCGGTGAGCAGTATGTGCGCTAGACTCATCCTCGTTGTTCAAGAA
ACCGCGGTACGGGCACTAAGTTTGCCCCACCACCCAACGTCATGTGGACG
CACTCCTCTGACAGTACCACCCGCGGGCGTTCCCGGACGGGAAAGAACAA
CCCGAACACCTGTTCGATCACGCTCCTTTGGTCACATAAGAATATGTGGC
ACGGACGATGGTTAGTGCCTGCGTACCGAGCGCTATGTTCAGTCGATTTC
GTGTCCTACGATGTTGGTGACATTATAACTTGTCCTTGACACCCGCCCCA
TAACACGATCTTCGTTTATTGTGTGTGGTGGTACCCCCCCCGCTCCCCCC
CCCCAACCCGACACGAAATCGACTCAGGCGAAGCTGCCAACGTTTGCATC
ACGATCTCGCCACCGGGGTTGCCGGCGACTGCGGTCGTAGCGGGACGACT
CTGTGCGCGGCAGTCCTCACGGGGCGACGGCTCACGGTCGCGAACGTCGG
AGATTCCGGCTGCTTGCGCCTATCACGCAGTACCGCTGCCGCAAGCAGCG
GCTCTTCTGCCTCGCCCAGCGCCGCCGCCGCCGCCGCTATTCCCGGCAAA
GCCGCGCTTGCCAGTGATCGTGGCACGCCTGATGTCGTAGACAAAGCCGG
GGGCGCAAGGGGCGGCGGCACGAGCAACAGGAGGAGGTTGAGAACAGCGG
AGAAGTTAATTGCGGGTGCGGCTGCTGGTGAAGAAGCGGCACCGGGAGGA
GGCAGTCGGGGCGGGGGGCTGGTCACGGAGCGGCTGTCGCGCGACCACAA
GCCGGAGAGCAAGGGCGAGCTGGAGAGGATCCGGGCCGCTGGCGGAATTG
TTTTCCCTCTCCCCAGGAGTGGCAGTGGCGGCGGTTCGGGGGCAGGTGGT
GTCACCGGAGGGGCTCCGCCAACGGCGGAAGGCTCGAAGAAAGGGTTAAA
AACGGTAGCAAGAGGGATTGCGGCGGGGATCCCGAGGGTGTGGACCGCAA
GCGGCGACGGTCCTGGGCTGGCGATGAGCAGGTCCATTGGCGACAAGGCA
AGGACACGCGCCTCGTTTCTCAAGATTCTAGAACGGCACTCTCATGGCGG
TGCTGTCGTGATGTAGGACCTACCTGCTCGCGTTTGGCCACGTTTCGCAT
GTTTGTCGTCAAAGGATCCTGCCGATTGGTGCTCTGTTGTTGCGGTAGTA
ACTGTAGCTCCGGGGACAGCCCACGTGAGGTTCGCTCCCGACGGATTGGA
GAGCGCCCCGTCACCGGTGGATGTGTTGTCATGCAATATGCTCGCAAGTT
TACGAGGTTGTTCCATCCTACAAAGTGCCAGAACAGTGCACGAATCAACC
CTGTCGTGCTTGCTTCTGTTTCCTCCGTTTCATTCCGACTCTGCCAGATG
GCCCACAGCGTGGGCGTGACTTACGAACCCGAGATAACCGAGTTCGACCT
AGACCCACGGAGCGACGTGATGCTCGTTTTCGCCTCCGACGGGGTTTGGG
ATGTTTTGAGCGCGGAAGACATCCGTAAGGTGCGGGCGTTCAAACCCCTG
AGAGTACGCCGAAATGTATTCAACGAAGTGCTTATTATTTATTTCTCGAG
GAGAAAACGTTACAGGTTGCAATATGAATCCCGATGCACGCACGGATCGA
AACATGGATCGATTCACGGCGGATCCGGAGGATAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:509149..512133+

>mRNA_Ecto-sp6_S_contig9.18041.1 ID=mRNA_Ecto-sp6_S_contig9.18041.1|Name=mRNA_Ecto-sp6_S_contig9.18041.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1245bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:509149..512133+ (Ectocarpus species6 EcLAC_371)
ATCGTCAGGCTGGAGGGCCGGTGGGCGTCGGCTGGCTCAATGGAACCCTA
TGTTGGCGTTTACTCCATTGCAGGAAAGAAGGCGCATGACCCTTTATGGA
AAAACCAGGATGCTGGTCTTGTCATCGCACCCCTCGACCGGAGGCAGGGC
CAAGCTCTATTTGCTATTTTTGATGGTCACGGGAAGAACGGGGGGCAAGC
ATCTCGCGAGTGCATGGAACGCCTGCCCAAGCACCTGGCGTCTGCTTCTT
CTCAATCTGGGAGTCCCGCGTCGGCGCTCCGGCGAAGCTGCCAACGTTTG
CATCACGATCTCGCCACCGGGGTTGCCGGCGACTGCGGTCGTAGCGGGAC
GACTCTGTGCGCGGCAGTCCTCACGGGGCGACGGCTCACGGTCGCGAACG
TCGGAGATTCCGGCTGCTTGCGCCTATCACGCAGTACCGCTGCCGCAAGC
AGCGGCTCTTCTGCCTCGCCCAGCGCCGCCGCCGCCGCCGCTATTCCCGG
CAAAGCCGCGCTTGCCAGTGATCGTGGCACGCCTGATGTCGTAGACAAAG
CCGGGGGCGCAAGGGGCGGCGGCACGAGCAACAGGAGGAGGTTGAGAACA
GCGGAGAAGTTAATTGCGGGTGCGGCTGCTGGTGAAGAAGCGGCACCGGG
AGGAGGCAGTCGGGGCGGGGGGCTGGTCACGGAGCGGCTGTCGCGCGACC
ACAAGCCGGAGAGCAAGGGCGAGCTGGAGAGGATCCGGGCCGCTGGCGGA
ATTGTTTTCCCTCTCCCCAGGAGTGGCAGTGGCGGCGGTTCGGGGGCAGG
TGGTGTCACCGGAGGGGCTCCGCCAACGGCGGAAGGCTCGAAGAAAGGGT
TAAAAACGGTAGCAAGAGGGATTGCGGCGGGGATCCCGAGGGTGTGGACC
GCAAGCGGCGACGGTCCTGGGCTGGCGATGAGCAGGTCCATTGGCGACAA
GGCAAGGACACGCGCCTCCGTGGGCGTGACTTACGAACCCGAGATAACCG
AGTTCGACCTAGACCCACGGAGCGACGTGATGCTCGTTTTCGCCTCCGAC
GGGGTTTGGGATGTTTTGAGCGCGGAAGACATCCGTAAGGTGCGGGCGTT
CAAACCCCTGAGAGTACGCCGAAATGTATTCAACGAAGTGCTTATTATTT
ATTTCTCGAGGAGAAAACGTTACAGGTTGCAATATGAATCCCGATGCACG
CACGGATCGAAACATGGATCGATTCACGGCGGATCCGGAGGATAA
back to top