mRNA_Ecto-sp6_S_contig9.18030.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18030.1
Unique NamemRNA_Ecto-sp6_S_contig9.18030.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18030.1 vs. uniprot
Match: D7G8F9_ECTSI (Splicing factor, arginine/serine-rich 2,rnap interacting protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8F9_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 7.880e-6
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = -1 
Query:    3 MEGISEPATNDESANASEAASTGSERNV 86
            MEG+SEPATNDESANASEAASTGSERNV
Sbjct:    1 MEGVSEPATNDESANASEAASTGSERNV 28
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8F9_ECTSI7.880e-696.43Splicing factor, arginine/serine-rich 2,rnap inter... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:427695..430382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size297
Hectar predicted targeting categoryother localisation
Exons2
Cds size195
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350513.8423302-UTR-Ecto-sp6_S_contig9:427694..4277951682350513.8423302-UTR-Ecto-sp6_S_contig9:427694..427795Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 427695..427795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350513.8502755-CDS-Ecto-sp6_S_contig9:427795..4278011682350513.8502755-CDS-Ecto-sp6_S_contig9:427795..427801Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 427796..427801 +
1682350513.8580217-CDS-Ecto-sp6_S_contig9:430193..4303821682350513.8580217-CDS-Ecto-sp6_S_contig9:430193..430382Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 430194..430382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18030.1prot_Ecto-sp6_S_contig9.18030.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 427796..430382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18030.1

>prot_Ecto-sp6_S_contig9.18030.1 ID=prot_Ecto-sp6_S_contig9.18030.1|Name=mRNA_Ecto-sp6_S_contig9.18030.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=65bp
MLRKNRECRLGAVSAAFQASFVPWRERRARGTRRMQDPAASVHGCGVWDG
KMGALSSRPSRVKEP
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mRNA from alignment at Ecto-sp6_S_contig9:427695..430382+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18030.1 ID=mRNA_Ecto-sp6_S_contig9.18030.1|Name=mRNA_Ecto-sp6_S_contig9.18030.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2688bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:427695..430382+ (Ectocarpus species6 EcLAC_371)
TGTACGTTGCGTTCCGATCCAGTTGATGCTGCCTCACTGGCGTTCGCCGA
CTCATCGTTTGTGGCTGGTTCACTGATGCCTTCCATTGCCTACAGAACAA
AATGTTGGCAGAAAGACGACGTCGTGGAAAAGAGGCGGATACCAAAAAAC
GGCATTGTTCAGTTTTGCAGTTAGCATCTTCATTGTAAGCATAATTGTAG
AACTTAAGACGGTATGGTTCTCAAACTATCAAGACTATTGACACTTTTCA
CGTTAACCGCAAACGATCAACGTAGTCAACATCATCAAGTTTGGTATTTG
AACGCGTTAGGCTGCACCCTGCGCAATTTTGCTTCGCAACAGTTTAAACG
CTTGCGTGCTCCTGTCAGGCATGCCACGGTAGGTGGTCCGCATATTCTTT
ACTTTCTGCTGATGGGGCTCAGCATGGCTACTTGCAGAAAGGGTAAACTG
AGTGTCAAGCCTTACGCTACCCCGGGTCACATATTGAACCCCGCTTAGAT
GTCTTACGCTACACACATCAAGGTGCAGGCTGGCTTAACGGACCGGTACG
CCTCACACTAAAACAGCGTTTTTCAGAGTTAACACCCAATCCATTGCGCA
TCTGGGTCTCCAACTTTTTAACCGTTCGATGCAAACATATGGGCACAGAG
AAAACGTGTTTTCTAGAACATAAAACGAATGAATTTCGGACGCGCCAAAA
GAAGAAACATGTTGCAAGTGAGTGCGTGGAGTCGGGGAAACCATAACAGG
TTGTTGAAAATGTGCTCCTCTCCGCAGGCACCATTACTGGCTACGGACGA
GTTCGAGGTGGGGCCCGCGGGGAACAACTCCGTGAGAGGACCGCTGCTAA
CTGTTGGCTTTGTGCTTATGCTTCCGCCTTGTTTGTGCAGAATTACAAGA
TGCGATGAGAGGAGAGGAAGGGTCCCACGTATACCAAGCGGCTGAGTAGA
CCGGGAGACTTCAGGGGTCATGAAGTGAGGAGCGGGAAGAAGATGAAGAA
AGGGTGCTGTCCTGGGGGCCCGGAGGGCGAACAATATTTGGCGTAGTCTC
GAAAGTTCAACAATGTGTACACACACGGGCGTGGTACAGCAATGCTGCCA
AAGGTTGGCGCGCGCGCCTCAGGGCTGAAGCGTTGATGGACAATCGTCAG
ACCTGCTCATACAGGCACCCGTCCTCTCCGTTCCGTTGCGTGTCTGTGGC
GTGAGCCGGATCAAACGTGAGCCGGACCAAAAGGACGTCAGAGGTCGGCG
GGAGGGCCTCCAGGCTGAAGTGTTTTTTGACAGTCGTCAAAAGTGTCCAT
CATACATAGATCCGTCGCTCCGTTCAGTAGCGTGGCGGTGAGATGAGCCA
GACAGAGCAAAGTGCTCCCGACAGTGTTGAACTGGACGGCACTCGGTGCC
AACTGAAACATTGAAACGAGGAGACCCGCGATGGTGGTGCACGTGGTTGT
ACCAACTTTGGTTTTGACGGGGACAACCACATACTGGGTATTGTGTGTGT
GGTAGATATGTCCCATTTTAGGCAGGAATATTGGAGTTATTCTTCTGCCG
CACCTTTGCCACACGAGGTCAAATATCCATATTACGGTAGGTAGGTGTAC
GAAGGGCGTTCGTAGCCGATTGGATTGCAGACACACGTAGACAGGGCAGA
CGGACGCCGGGTGTGCACTCATGACACGGTGAAACAAAGCGAGGGATGCC
GTGCACAAAAACCGGTTTTCAGCCGTGAACTTGGCGTCTGCATCCTCCAG
GAAACAGGCGTGTGGCACCAGAAGGCTGATCATGCACGGGCAGCCCTCCA
CCTGCTACTTCAACAGCAGCAGTAGTAGGTGTAGCAGTAGCGGAGCTCTT
GCGAACTACTACAGGATGGACGGATACATGTAGACTCATCCTGATCAGCC
CAAGTACCCTGCTGCCATCCTAGCCCAACTATTCCTCCAGACTAGGCCTA
CGCTCTCATTCTCAATTGCTGCTGCTGCTGCTGCTGTGCTGCTGCTGCTG
CTGTTTGCTGCTTGCTGCTGAGTTGCTGGCTAGCATAGATGTACCTCGCT
AGCGTACTCATTGGTCACCTCAACTAATGTAACTTGTTCATCTTcaaCAA
CGTTGTTTATTTTATGTGTCAGATCAGCATCGATCTGCTGCATTTGCACC
ACCAACCACATGACCACGAACCCTACACCACTACTACTATTCTACCTCCT
CAATAAGATGCATTGTACATCATCTGCAACGTACACTGGCCAGTCAGTCC
CTCCTCCATGCCTCCCTCCTTGTAGACTATGTAGACTATGCAATCGACGT
GATGACGGGGCAACGACCAGGCAGATCATAAATGCCCTGTGGTTTACATG
CCATCAAGGGATGCATCTGCCAGGGTATCCCCGCTACACGAATACATCTA
CATCTATCTACATGTTTTACAACACTCGATGCAAGATCTGGCATGTAGAT
GCGGCGATGCATGAACGATGAAGATGTTTATACAGCACGACCCACCAAGA
GGAAAAACCGCGAATGTCGATTGGGGGCTGTTTCGGCCGCCTTTCAGGCA
AGCTTCGTCCCCTGGAGGGAACGAAGGGCGCGTGGAACACGTAGGATGCA
GGATCCAGCTGCTTCAGTCCACGGTTGCGGTGTGTGGGACGGGAAGATGG
GAGCCCTATCAAGTCGTCCATCGAGAGTAAAAGAGCCG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:427695..430382+

>mRNA_Ecto-sp6_S_contig9.18030.1 ID=mRNA_Ecto-sp6_S_contig9.18030.1|Name=mRNA_Ecto-sp6_S_contig9.18030.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:427695..430382+ (Ectocarpus species6 EcLAC_371)
ATGTTGAGGAAAAACCGCGAATGTCGATTGGGGGCTGTTTCGGCCGCCTT
TCAGGCAAGCTTCGTCCCCTGGAGGGAACGAAGGGCGCGTGGAACACGTA
GGATGCAGGATCCAGCTGCTTCAGTCCACGGTTGCGGTGTGTGGGACGGG
AAGATGGGAGCCCTATCAAGTCGTCCATCGAGAGTAAAAGAGCCG
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