mRNA_Ecto-sp6_S_contig9.18027.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18027.1 vs. uniprot
Match: A0A6H5JG03_9PHAE (BHLH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG03_9PHAE) HSP 1 Score: 747 bits (1929), Expect = 1.690e-260 Identity = 550/639 (86.07%), Postives = 557/639 (87.17%), Query Frame = 1
Query: 736 MPFPSHQLGALMAARGGDCGDSGTNNGYRDVAALDATGLGLWGWCFPSPTPIMGAGVEGGAPASAXXXTGARAGGTILAGVPGLGSVGNFQALAATPAAXXXXXGPQQYPRPMPRRQQFLEPGDVRPPNAAGAWGGISGINNAGGGVSSSEGDVAGLGVDELGAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETFQHLSAMLTDGTGKAPEHVLSKAVLKNKDQDLSLSLTLVRDALGRPKYFLCSLLPNTPAASPSLSPLPGPLSGGGLLPGPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPVGSIPDAXXXXXXXXXXXXXXXXXXXXXXXXXXXGSATASAGDAKSSV------------FTPAAAEPEGISVSTADDDXXXXXXXXXXXXXXXXXXXXXXXXXESINGCSSGSDGDVGSTMMSSREVVELVEVFESSRGGDSRGKDGTAAKRR 2616
MPFPSHQLGALMAA GGD G SGTNNGY DVAA+DATGLGLWGWCFPSPTPIMGAGVEG AP SA GARAGGTILAGVPGLGSVGNFQALA +PAA GPQQYPRPMPR QQFLEPGDVRPPN AGAWGG+S INNAGGGVSSSEG+VAGLGV ELGAAA XXXXXXXXXXX PSELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETFQ LSAMLTDGTGKAPEHVLSKAVLKNKDQDLSLSLTLVRDALGRPKYFLCSLLPNTPAASP LS +PGPL+ GGLLPGPG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GPVGS+PDAXXXXXXXXXXXXXXXXXXXXXXXX SAGDAKSSV TPAAAEP GISVSTADD XXXXXXXXXXXXXXXXXXXXX ESINGCSSGSDGDVGS MMSSREVVELVEVFESSRGGDSRGKD AAKRR
Sbjct: 1 MPFPSHQLGALMAASGGDSGGSGTNNGYPDVAAMDATGLGLWGWCFPSPTPIMGAGVEGRAPISAGAGXGARAGGTILAGVPGLGSVGNFQALATSPAATLAAAGPQQYPRPMPRGQQFLEPGDVRPPNVAGAWGGVSRINNAGGGVSSSEGEVAGLGVGELGAAA-----HSGGTEQQEGSVGSGXXXXXXXXXXXNPSELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETFQRLSAMLTDGTGKAPEHVLSKAVLKNKDQDLSLSLTLVRDALGRPKYFLCSLLPNTPAASPPLSTVPGPLASGGLLPGPGDAACAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GPVGSLPDAXXXXXXXXXXXXXXXXXXXXXXXXG-------SAGDAKSSVSTTGSHSGVNPSLTPAAAEPGGISVSTADD---XXXXXXXXXXXXXXXXXXXXXDTESINGCSSGSDGDVGSMMMSSREVVELVEVFESSRGGDSRGKDDMAAKRR 623
BLAST of mRNA_Ecto-sp6_S_contig9.18027.1 vs. uniprot
Match: D7G8G2_ECTSI (BHLH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G2_ECTSI) HSP 1 Score: 540 bits (1392), Expect = 1.170e-183 Identity = 332/346 (95.95%), Postives = 335/346 (96.82%), Query Frame = 1
Query: 736 MPFPSHQLGALMAARGGDCGDSGTNNGYRDVAALDATGLGLWGWCFPSPTPIMGAGVEGGAPASAXXXTGARAGGTILAGVPGLGSVGNFQALAATPAAXXXXXGPQQYPRPMPRRQQFLEPGDVRPPNAAGAWGGISGINNAGGGVSSSEGDVAGLGVDELGAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETF 1773
MPFPSHQLGALMAA GGDCG+SGTNNGYRDVAALDATGLGLWGWCFPSPTPIMGAGVEG XXX RAGGTILAGVPGLGSVGNFQALAATPAAXXXXXGPQQYPRPMPR QQFLEPGDVRPPNAAGAWGG+SG+NNAGGGVSSSEGDVAGLGVDELGAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETF
Sbjct: 1 MPFPSHQLGALMAASGGDCGNSGTNNGYRDVAALDATGLGLWGWCFPSPTPIMGAGVEGXXXXXXXXXXXXRAGGTILAGVPGLGSVGNFQALAATPAAXXXXXGPQQYPRPMPRGQQFLEPGDVRPPNAAGAWGGVSGVNNAGGGVSSSEGDVAGLGVDELGAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETF 346
BLAST of mRNA_Ecto-sp6_S_contig9.18027.1 vs. uniprot
Match: A0A7S3XZX8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZX8_HETAK) HSP 1 Score: 132 bits (331), Expect = 4.210e-30 Identity = 84/206 (40.78%), Postives = 122/206 (59.22%), Query Frame = 1
Query: 1333 SELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAET-SDVPEV---GRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETFQHLSAMLTDGTGKAPEHVLSKAVLKNKDQDLS-LSLTLVRDA-LGRPKYFLCSLL 1932
+E KR++RN REQ+RS+ S+QID+LR LLQE G Q K NK +VLS V Y AQL +Q + L+ ER +W+AE + PE R P G D ++VF H + A+A V+GR ++ N +FE +G+ ++ +LTL +L AP +LQ F + M++ G EHVL LK + + L+L LVR P++F C +L
Sbjct: 23 NEKKRKDRNMREQKRSVKISKQIDRLRALLQEAGAQVKPNKHAVLSGVVHYMAQLHKQAQALDLERRQWLAEAHAGAPEAEAKARPGPAGAPCDYRRVFQHMGLPAAVAAVDGRFVDCNAKFEEATGYSRRDVVRLTLFNLAAPHDLQRLFSVVGQMMSGRYGGGGEHVLEHVRLKGGTRARAKLALRLVRGGPANAPQFFHCVML 228
BLAST of mRNA_Ecto-sp6_S_contig9.18027.1 vs. uniprot
Match: A0A4D9CZ03_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZ03_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 1.110e-13 Identity = 70/242 (28.93%), Postives = 119/242 (49.17%), Query Frame = 1
Query: 1342 KRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKAN-KSSVLSEVASYTAQLQQQI-----------------------------EQLEEERARWMAETSDVPEVG-RQDPNGGT-IDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETFQHLSAMLTDGTGKAPEHVLSKAV--------------LKNKDQDLSLSLTLVRDALGRPKYFLCSL 1929
++Q+RNAREQ+RSL S+QI L+ LL+E G + K N K ++L V Y +L++++ E + + R ++ S V R+D + +F S LA+A+VEGR I++N++FE +G+ EL++LT +L AP ELQ+TF ++ ML +G+ + S+ + L + Q+L ++++LV+ +F CSL
Sbjct: 28 RKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEEVGGMVLGREGGXXXXXXXXXXMDVGVGTSVEAVGQRNGRSESDLSVVTATSVREDREVARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAELERLTFFNLVAPEELQDTFAAVARMLNQPSGEEEDKEDSEMLRLTRRALPKVGIGGLGQQAQNLHITISLVKPQEDSMAFFQCSL 269
BLAST of mRNA_Ecto-sp6_S_contig9.18027.1 vs. uniprot
Match: A0A7S1BWH9_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BWH9_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 7.460e-12 Identity = 72/250 (28.80%), Postives = 112/250 (44.80%), Query Frame = 1
Query: 1336 ELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEE---------RARWMAETSDVPEVGRQDPNGGTIDCKQVFAHA----------SVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETFQHLSAMLTDGTGK--APEHVLSKAVL-KNKDQD---------------------------LSLSLTLVRDALGRPKYFLCSLLPN 1938
E +R +RN REQ+RS S+QI +L+ +L I K NK S+L A Y QLQ + L+ E +A M T P+ Q N +ID VF S A+A+A+++GR ++ N+QFE +SG+ EEL + TL + +++E F+ + ML + + S VL KN+ D L +++T+ R G ++F C+L N
Sbjct: 119 EKRRYDRNLREQQRSYKISQQIKELKTVLSNSNIPFKPNKFSILLSTAVYIKQLQSRAMLLDSEHQKLLNSIGQASEMVTTGQSPDDLAQASNTNSIDADLVFVQGLQYSNIFYQCSAAIAVASLDGRFLDCNIQFEKVSGYTKEELTRETLFNFLTNDDMEEVFKVMGQMLKEDNNADFSARTFWSGVVLQKNRKVDVRIFVSHLCTIIKYCYSNTHVFFFYPKLQMNITMARAPDGTARFFNCALTSN 368
BLAST of mRNA_Ecto-sp6_S_contig9.18027.1 vs. uniprot
Match: W7TXM2_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXM2_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 2.830e-10 Identity = 42/136 (30.88%), Postives = 77/136 (56.62%), Query Frame = 1
Query: 1564 EVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETFQHLSAMLTDGTGKAPEHVLSKAVLKNKDQDLSLSLTLVRDALGRPKYFLCSLLP--NTPAASPSLS 1965
E G PN + D +F +AS+A+A+A+++G+ ++ N F +SG+ N E+ Q ++ LT + QE + M+ + ++ +H + +N+D +S+ LVR A G P +F C++LP + P AS S++
Sbjct: 292 EAGSWAPNKKSADYALMFQNASIAMAVASLDGKFVDCNSAFSIISGYSNGEVLQRSVFDLTPAEDCQELMGIVGKMM-ESPAESAKHFWKRCCFENRDCHCFVSMWLVRKASGEPVFFQCAVLPLEDYPMASKSVT 426
BLAST of mRNA_Ecto-sp6_S_contig9.18027.1 vs. uniprot
Match: A0A7S1XXW7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXW7_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 9.260e-6 Identity = 62/243 (25.51%), Postives = 106/243 (43.62%), Query Frame = 1
Query: 1342 KRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWM----------------------------AETSDVPEVGRQDP---------NGGTI-----DCKQVFAHASVALAMATVEGRLIESNLQFEAL----SGHRNEELKQLTLLSLTAPSELQETFQHLSAMLTDGTGKAPEHVLSKAVLKNKDQDLSLSLTLVRDALGRPKYFLCSLL 1932
+RQERN REQ+RSL SR+ID+L ++L + G KANKSS+L E SY LQ + + E ER++++ A SD G ++P G D + F + A+A +G+++ N +F+ +G + TL L S+L F+ ++A L + + + +D+ ++++L+RD + + F +LL
Sbjct: 102 RRQERNHREQKRSLKISRKIDELHEILTDSGRMVKANKSSILREAFSYIMHLQGVLARKEYERSQFVNILTTNGASGISGIKDGFDDANFKASIAALMSDSDATGGKNPVDWAKLLSGEGAAAAAAQDDFARYFDATPIPCAVAGTDGQVLGMNTKFQNFVMPGAGASFDRKSYPTLFGLVETSQLCNVFKIIAAALRHDGDQLAYFEVQPCLQGEVRKDMVMTVSLIRDEMREARLFSVALL 344
BLAST of mRNA_Ecto-sp6_S_contig9.18027.1 vs. uniprot
Match: UPI000A0184ED (EAL domain-containing protein n=1 Tax=Nevskia soli TaxID=418856 RepID=UPI000A0184ED) HSP 1 Score: 60.8 bits (146), Expect = 1.040e-5 Identity = 31/111 (27.93%), Postives = 64/111 (57.66%), Query Frame = 1
Query: 1606 KQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETFQHLSAMLTDGTGKAPEHVLSKAVLKNKDQDL---SLSLTLVRDALGRPKYFLCSL 1929
+ F HAS+ +A+ +++GR ++ N A+ G+ EEL + +LT P +L +++ ++ G+ +V+ K ++D+ + SLS+++VRD+ G+P YF+ +
Sbjct: 49 RSAFTHASIGMALVSLDGRWLQVNKSLSAMMGYSMEELLKTDFQTLTHPDDLPADLEYVKCLVA---GEIQSYVMEKRYF-HRDRHIICASLSVSMVRDSAGKPLYFISQI 155
BLAST of mRNA_Ecto-sp6_S_contig9.18027.1 vs. uniprot
Match: A0A6L4YW74_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A6L4YW74_9BACT) HSP 1 Score: 60.1 bits (144), Expect = 2.180e-5 Identity = 33/114 (28.95%), Postives = 60/114 (52.63%), Query Frame = 1
Query: 1606 KQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETFQHLSAMLTDGTGKAPEHVLSKAVLKNKDQDL--SLSLTLVRDALGRPKYFLCSLLPNT 1941
+ F +A+ + M +++GR + +N F L G+ EEL + +T P +LQ HL ++ GKA SK + ++ + LS++LVRD + +PK+F+ ++ T
Sbjct: 490 RHAFDYAAAGICMVSIDGRFLRANEVFRQLLGYSEEELNIMHFNDITHPDDLQIGLDHLEMLVL---GKAQRASFSKRYISKSNRIIWGYLSISLVRDNMDKPKFFITHIIDQT 600
BLAST of mRNA_Ecto-sp6_S_contig9.18027.1 vs. uniprot
Match: A0A0U2SYI1_9STRA (BHLH transcription factor 1 n=2 Tax=Microchloropsis salina TaxID=2511165 RepID=A0A0U2SYI1_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 8.670e-5 Identity = 31/119 (26.05%), Postives = 67/119 (56.30%), Query Frame = 1
Query: 1597 IDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETFQHLSAMLTDGT--GKAPEHVLSKAVLKNKD-----QDLSLSLTLVRDALGRPKYFLCSLL 1932
+D ++F + V +A+ +++GRL++ N++F ++G+ N++L +TL L AP L++ F+ ++ +L+ K P + + A ++ ++ L+LVRD R + F C ++
Sbjct: 508 LDFSEIFRSSHVPMAVVSIDGRLLQCNVEFSRVTGYTNDKLAGVTLFGLAAPECLEQLFKSIARLLSTAALDEKNPAYFATAAARATPFSHPGYKEANILLSLVRDEEHRARAFHCCIV 626 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig9.18027.1 >prot_Ecto-sp6_S_contig9.18027.1 ID=prot_Ecto-sp6_S_contig9.18027.1|Name=mRNA_Ecto-sp6_S_contig9.18027.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=873bp ACFALGNASLLAVLPGNAPPAPCAVRRQLFFPSPPRRLPAHTHLLFEAPSback to top mRNA from alignment at Ecto-sp6_S_contig9:389036..394549- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig9.18027.1 ID=mRNA_Ecto-sp6_S_contig9.18027.1|Name=mRNA_Ecto-sp6_S_contig9.18027.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5514bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:389036..394549- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:389036..394549- >mRNA_Ecto-sp6_S_contig9.18027.1 ID=mRNA_Ecto-sp6_S_contig9.18027.1|Name=mRNA_Ecto-sp6_S_contig9.18027.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2619bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:389036..394549- (Ectocarpus species6 EcLAC_371)back to top |