mRNA_Ecto-sp6_S_contig9.18026.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18026.1
Unique NamemRNA_Ecto-sp6_S_contig9.18026.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18026.1 vs. uniprot
Match: D7G8G3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G3_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.030e-9
Identity = 28/33 (84.85%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    1 MNAVGDTKHNHRGHPGELRACLLAFLDQFLQEH 99
            MNAVGDTK NH    GELRACLLAFLDQFLQEH
Sbjct:    1 MNAVGDTKQNH----GELRACLLAFLDQFLQEH 29
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8G3_ECTSI1.030e-984.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:385551..385731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size166
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_002920.1
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350519.6632955-CDS-Ecto-sp6_S_contig9:385550..3856751682350519.6632955-CDS-Ecto-sp6_S_contig9:385550..385675Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 385551..385675 -
1682350519.6733656-CDS-Ecto-sp6_S_contig9:385691..3857311682350519.6733656-CDS-Ecto-sp6_S_contig9:385691..385731Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 385692..385731 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18026.1prot_Ecto-sp6_S_contig9.18026.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 385551..385731 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18026.1

>prot_Ecto-sp6_S_contig9.18026.1 ID=prot_Ecto-sp6_S_contig9.18026.1|Name=mRNA_Ecto-sp6_S_contig9.18026.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=55bp
MNAVGDTKHNHRGHPGELRACLLAFLDQFLQEHLSLSLASPSLRMFTHEF
HPAAA
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mRNA from alignment at Ecto-sp6_S_contig9:385551..385731-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18026.1 ID=mRNA_Ecto-sp6_S_contig9.18026.1|Name=mRNA_Ecto-sp6_S_contig9.18026.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=181bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:385551..385731- (Ectocarpus species6 EcLAC_371)
ATGAATGCTGTCGGTGACACCAAACACAACCATCGAGGGCGTCAAAGAAA
GGCAAGACCCTGGGGAGCTGCGTGCGTGCCTCTTGGCATTTCTCGACCAA
TTCTTACAAGAACACTTGTCACTGTCACTCGCATCTCCCTCGCTCCGTAT
GTTCACGCACGAGTTTCACCCCGCCGCCGCC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:385551..385731-

>mRNA_Ecto-sp6_S_contig9.18026.1 ID=mRNA_Ecto-sp6_S_contig9.18026.1|Name=mRNA_Ecto-sp6_S_contig9.18026.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:385551..385731- (Ectocarpus species6 EcLAC_371)
ATGAATGCTGTCGGTGACACCAAACACAACCATCGAGGGCACCCTGGGGA
GCTGCGTGCGTGCCTCTTGGCATTTCTCGACCAATTCTTACAAGAACACT
TGTCACTGTCACTCGCATCTCCCTCGCTCCGTATGTTCACGCACGAGTTT
CACCCCGCCGCCGCC
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