mRNA_Ecto-sp6_S_contig9.18019.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18019.1
Unique NamemRNA_Ecto-sp6_S_contig9.18019.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18019.1 vs. uniprot
Match: D7G8G9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8G9_ECTSI)

HSP 1 Score: 559 bits (1440), Expect = 1.440e-195
Identity = 279/287 (97.21%), Postives = 280/287 (97.56%), Query Frame = 1
Query:    1 MHYEYNTSSVAAVLVCVGLPVLFGYHNRQVETAPTAQSVHWRRRLQHATCGVAVTCGYKWVIRDARTVVAILSIVCASFLALHRLRRRLKSVDKLYILLLGPLLRPQEIRGELPGGFWFVVGSTAAVALFSKDVALQSILHLSLGDPVASVVGIKKGEGNRILPGGKSLAGSLAAFLACSLSTLLLFGCCCRPPGDEGCDSDHVADSDPLSSLIFGHFSACTAVGRGGRDSGGSGTPLLLWFALLGGVSGAVGELLPLGVDDNLSMPIVSGLTFLALRKCRTFDEPG 861
            M YEYNTSSVAAVLVCVGLPVLFGYHNRQVETAPTAQSVHWRRRLQHATCGVAVTCGYKWVIRDARTVVAILSI CASFLALHRLRRRLKSVDKLYILLLGPLLRPQEIRG+LPGGFWFVVGSTAAVALFSKDVALQSILHLSLGDPVASVVGIKKGEGNRILPGGKSLAGSLAAFLACSLSTLLLFGCCCRPPGDEG DSDHV DSD LSSLIFGHFSACTAVGRGGRDSGGSGTPLLLWFALLGGVSGAVGELLPLGVDDNLSMPIVSGLTFLALRKC TFD PG
Sbjct:    1 MQYEYNTSSVAAVLVCVGLPVLFGYHNRQVETAPTAQSVHWRRRLQHATCGVAVTCGYKWVIRDARTVVAILSIACASFLALHRLRRRLKSVDKLYILLLGPLLRPQEIRGQLPGGFWFVVGSTAAVALFSKDVALQSILHLSLGDPVASVVGIKKGEGNRILPGGKSLAGSLAAFLACSLSTLLLFGCCCRPPGDEGRDSDHVGDSDLLSSLIFGHFSACTAVGRGGRDSGGSGTPLLLWFALLGGVSGAVGELLPLGVDDNLSMPIVSGLTFLALRKCSTFDGPG 287          
BLAST of mRNA_Ecto-sp6_S_contig9.18019.1 vs. uniprot
Match: A0A485LBM6_9STRA (Aste57867_18956 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBM6_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.220e-35
Identity = 98/269 (36.43%), Postives = 139/269 (51.67%), Query Frame = 1
Query:   16 NTSSVAAVL--VCV-GLPVLFGYHNRQVETAPTAQSVHWRRRLQHATCGVAVTCGYKWVIRDARTVVAILSIVCASFLALHRLRRRLKSVDKLYILLLGPLLRPQEIRGELPGGFWFVVGSTAAVALFSKDVALQSILHLSLGDPVASVVGIKKGEGNRILPGGKSLAGSLAAFLACSLSTLLLFGCCCRPPGDEGCDSDHVADSDPLSSLIFGHFSACTAVGRGGRDSGGSGTPLLLWFALLGGVSGAVGELLPLGVDDNLSMPIVSG 813
             +S+VAAV+   CV GL  L   H+    T  T Q +H RR++QHA  G+ V  G  +    +  VV +L     +F  +  LR++ K V+  Y+ + GP+LR  EI   LPG FWF++GS  ++A FSKDVA  SILHLSLGDP AS  GI  G  +  L  GK++AG +  F+ C L+++                           +L+ G  +  T +   G               +L G++G +GE L LGVDDNLS+P+VSG
Sbjct:   31 TSSAVAAVVFTTCVLGLQFLVVQHS-STSTVRTTQQLHIRRKVQHAGSGLLVVAGTFYA--SSVQVVIVLGCSAVAFYIITYLRKQYKVVNTTYLHVFGPILRQHEIAHRLPGAFWFLLGSALSLAFFSKDVAQLSILHLSLGDPCASFFGITLGHHSHKLANGKTIAGVVGCFVVCLLTSIAFL------------------------ALVDGPVAHGTTLATKGL------------VMVLAGLAGTLGEALSLGVDDNLSLPLVSG 260          
BLAST of mRNA_Ecto-sp6_S_contig9.18019.1 vs. uniprot
Match: A0A067D3P6_SAPPC (Phosphatidate cytidylyltransferase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D3P6_SAPPC)

HSP 1 Score: 129 bits (325), Expect = 3.900e-30
Identity = 82/238 (34.45%), Postives = 121/238 (50.84%), Query Frame = 1
Query:  103 TAQSVHWRRRLQHATCGVAVTCGYKWVIRDARTVVAILSIVCASFLALHRLRRRLKSVDKLYILLLGPLLRPQEIRGELPGGFWFVVGSTAAVALFSKDVALQSILHLSLGDPVASVVGIKKGEGNRILPGGKSLAGSLAAFLACSLSTLLLFGCCCRPPGDEGCDSDHVADSDPLSSLIFGHFSACTAVGRGGRDSGGSGTPLLLWFALLGGVSGAVGELLPLGVDDNLSMPIVSGL 816
            T Q +H RR++QHA  GV +     +    A     IL+I   +F  +  +R++ K+VD +Y+ + GP+LR  E+   LPG F+F++GS  +  L+ K +A  ++LHLSLGDP AS  GI  G+ +  L  GK+LAG +  FL C LS++                 D + D      L                        LL+  A   G++GA+GE+L +G DDNLSMP+ SGL
Sbjct:   60 TTQELHVRRKVQHAGTGVLIVVATFY--GSALEAAVILAICALTFYCVSFMRKQSKAVDAIYLQIFGPILRQHEVGHRLPGAFYFLMGSALSFVLYPKFIAQLAVLHLSLGDPCASFFGITLGQHSTKLWNGKTLAGVIGCFLVCLLSSVAFL---------TTATHDAITDLSTFQQL------------------------LLMGMA---GIAGAIGEVLNVGCDDNLSMPLFSGL 259          
BLAST of mRNA_Ecto-sp6_S_contig9.18019.1 vs. uniprot
Match: W4H9K3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H9K3_9STRA)

HSP 1 Score: 129 bits (325), Expect = 3.900e-30
Identity = 93/269 (34.57%), Postives = 135/269 (50.19%), Query Frame = 1
Query:   16 NTSSVAAVLVCVGLPVL-FGYHNRQVE-TAPTAQSVHWRRRLQHATCGVAVTCGYKWVIRDARTVVAILSIVCASFLALHRLRRRLKSVDKLYILLLGPLLRPQEIRGELPGGFWFVVGSTAAVALFSKDVALQSILHLSLGDPVASVVGIKKGEGNRILPGGKSLAGSLAAFLACSLSTLLLFGCCCRPPGDEGCDSDHVADSDPLSSLIFGHFSACTAVGRGGRDSGGSGTPLLLWFALLGGVSGAVGELLPLGVDDNLSMPIVSGL 816
             TSSVAAV+  V + +L F    R    T  T + +H RR++QHA  GV V  G  +   ++  V  +L+    +F  + +LR++   V+  Y+ + GP+LR  EI   LPG FWF++G + ++ +F KDVA  S+LHLSLGDP AS  G+  G     L  GK++AG    F+ C  +++                   V D+         H                SG    +  AL G V+G VGE+L +G DDNLS+P+VSGL
Sbjct:   32 GTSSVAAVVFIVAILLLQFVVVRRPTHNTVRTTKELHVRRKIQHAGSGVLVVVGSFYA--NSLQVSVVLACSAVAFYIVAQLRKQNNIVNDTYLHVFGPILRQHEIAHRLPGAFWFLLGCSISLLIFKKDVAQLSVLHLSLGDPCASFFGLTLGHHTTKLANGKTIAGVAGCFVVCFATSVAFLS---------------VVDAS------VAHV---------------SGIEKAVVMALCG-VAGTVGEVLYVGCDDNLSLPLVSGL 261          
BLAST of mRNA_Ecto-sp6_S_contig9.18019.1 vs. uniprot
Match: A0A024US71_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024US71_9STRA)

HSP 1 Score: 127 bits (318), Expect = 3.690e-29
Identity = 89/268 (33.21%), Postives = 127/268 (47.39%), Query Frame = 1
Query:   16 NTSSVAAVLVCVGLPVLFGYHNRQV--ETAPTAQSVHWRRRLQHATCGVAVTCGYKWVIRDARTVVAILSIVCASFLALHRLRRRLKSVDKLYILLLGPLLRPQEIRGELPGGFWFVVGSTAAVALFSKDVALQSILHLSLGDPVASVVGIKKGEGNRILPGGKSLAGSLAAFLACSLSTLLLFGCCCRPPGDEGCDSDHVADSDPLSSLIFGHFSACTAVGRGGRDSGGSGTPLLLWFALLGGVSGAVGELLPLGVDDNLSMPIVSG 813
             TSSV AV+  V                T  T Q +H RR++QHA  GV V  G  +    +  V  +L+   A+F  + +LR++ K V+  Y+ + GP+LR  EI   LPG FWF++G   ++ LF KDVA  S+LHLSLGDP AS+ G+  G     L  GK++AG +     C ++++                   V D+         H S    VG                   L G +G +GE+L +G DDNLS+P+VSG
Sbjct:   34 GTSSVVAVVFIVATXXXXXXXXXXXTHHTVRTTQELHIRRKIQHAGSGVLVVVGSFFA--SSLQVSIVLACSAAAFYIVAQLRQQYKVVNSTYLRVFGPILRQHEIAHRLPGAFWFLLGCCGSLLLFPKDVAQLSVLHLSLGDPCASLFGLTWGHHTSKLSNGKTIAGVVGCMFVCFVTSVGFLS---------------VVDTS------IQHLSGIQRVG----------------VMALCGAAGTLGEVLYVGCDDNLSLPLVSG 262          
BLAST of mRNA_Ecto-sp6_S_contig9.18019.1 vs. uniprot
Match: A0A1V9Z468_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z468_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.420e-28
Identity = 80/239 (33.47%), Postives = 125/239 (52.30%), Query Frame = 1
Query:  103 TAQSVHWRRRLQHATCG-VAVTCGYKWVIRDARTVVAILSIVCASFLALHRLRRRLKSVDKLYILLLGPLLRPQEIRGELPGGFWFVVGSTAAVALFSKDVALQSILHLSLGDPVASVVGIKKGEGNRILPGGKSLAGSLAAFLACSLSTLLLFGCCCRPPGDEGCDSDHVADSDPLSSLIFGHFSACTAVGRGGRDSGGSGTPLLLWFALLGGVSGAVGELLPLGVDDNLSMPIVSGL 816
            T Q +H RR++QHA  G + V   +     +A  V+AI ++   +F  +  +R++ K+VD +Y+ + GP+LR  E+   LPG F+F+ GS  +  ++ K +A  S+LHLSLGDP AS  GI  G+ +  L  GK++AG +  FL C LS+++                D V     +  ++F    A T                        GV+GA+GE++ +G DDNLSMP++SGL
Sbjct:   62 TTQELHLRRKVQHAGTGALIVVATFYGTSLEASVVLAICAL---TFYFVSFMRKQSKAVDAIYLQIFGPILRQHEVHHRLPGAFYFLTGSALSFVVYPKFIAQLSVLHLSLGDPCASFFGITLGQHSTRLWNGKTVAGVIGCFLVCLLSSVVFVTLAAH---------DAVKSFSVIKQMLF---MAAT------------------------GVAGAIGEVVNVGCDDNLSMPLLSGL 261          
BLAST of mRNA_Ecto-sp6_S_contig9.18019.1 vs. uniprot
Match: A0A1W0ABA5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ABA5_9STRA)

HSP 1 Score: 123 bits (308), Expect = 8.050e-28
Identity = 84/238 (35.29%), Postives = 117/238 (49.16%), Query Frame = 1
Query:  103 TAQSVHWRRRLQHATCGVAVTCGYKWVIRDARTVVAILSIVCASFLALHRLRRRLKSVDKLYILLLGPLLRPQEIRGELPGGFWFVVGSTAAVALFSKDVALQSILHLSLGDPVASVVGIKKGEGNRILPGGKSLAGSLAAFLACSLSTLLLFGCCCRPPGDEGCDSDHVADSDPLSSLIFGHFSACTAVGRGGRDSGGSGTPLLLWFALLGGVSGAVGELLPLGVDDNLSMPIVSGL 816
            T Q +H RR++QHA  GV +     +      TVV  L+I    F  +   RR+ K+VD +Y+ + GP+LR  E+   LPG F+F+ GS  +   + K +A  S+LHLSLGDP AS  GI  G     L  GK+LAG +  F  C LS++                   V   D        H S    V             L++  +   G++GA+GE+L +G DDNLSMPI+SGL
Sbjct:   60 TTQELHVRRKIQHAGTGVLIVIATFYGSSIEATVV--LAICALIFYGVSVARRQFKAVDTVYLQIFGPILRQHEVGHRLPGAFFFLTGSALSFVFYPKFIAQLSVLHLSLGDPCASFFGITLGHTTSKLWNGKTLAGVIGCFFVCLLSSIAFLS--------------FVVHHD------IAHLSWLKQV-------------LIMGTS---GIAGAIGEVLNVGCDDNLSMPIISGL 259          
BLAST of mRNA_Ecto-sp6_S_contig9.18019.1 vs. uniprot
Match: A0A6G0XP90_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XP90_9STRA)

HSP 1 Score: 121 bits (303), Expect = 7.590e-27
Identity = 93/269 (34.57%), Postives = 130/269 (48.33%), Query Frame = 1
Query:   16 NTSSVAAVLVCVGLPVLFGYHNRQVETAP--TAQSVHWRRRLQHATCGVAVTCGYKWVIRDARTVVAILSIVCASFLALHRLRRRLKSVDKLYILLLGPLLRPQEIRGELPGGFWFVVGSTAAVALFSKDVALQSILHLSLGDPVASVVGIKKGEGNRILPGGKSLAGSLAAFLACSLSTLLLFGCCCRPPGDEGCDSDHVADSDPLSSLIFGHFSACTAVGRGGRDSGGSGTPLLLWFALLGGVSGAVGELLPLGVDDNLSMPIVSGL 816
             +S+VA VL    + +L     R   T+   T + +H RR++QHA  G+ V     +       VV I S   A F  + +LR++ K V++ Y+ + GP+LR  EI   LPG FWF++G   ++ LF K+VA  SILHLSLGDP AS  GI  G+ +  +P GK+LAG +  F+ C L  +          G        +A    L   +     +C                    FA      G +GE L LG DDNLS+PIVSGL
Sbjct:   64 GSSAVACVLFTFLILLLQFLVVRHSSTSAVRTTKQLHIRRKVQHAGSGLLVVLASFYGSSVQVAVVLICS--AAVFYVVTQLRKQSKVVNQTYLHVFGPILRQHEIAYRLPGAFWFLLGCAGSMLLFPKEVAQLSILHLSLGDPCASFFGITLGQNSPKMPNGKTLAGVIGCFVVCLLCNI----------GFLSIVDTSIAHLGLLEKALV--VVSCA-------------------FA------GTLGEALYLGCDDNLSLPIVSGL 293          
BLAST of mRNA_Ecto-sp6_S_contig9.18019.1 vs. uniprot
Match: A0A2D4BUY6_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BUY6_PYTIN)

HSP 1 Score: 109 bits (272), Expect = 3.770e-23
Identity = 93/283 (32.86%), Postives = 130/283 (45.94%), Query Frame = 1
Query:   19 TSSVAAVLVCVGLPVLFGYHNRQVET--------APTAQSVHWRRRLQHATCGVAVTCGYKWVIRDARTVVAILSIVCASFLALHRLRRRLKSVDKLYILLLGPLLRPQEIRGE-LPGGFWFVVGSTAAVALFSKDVALQSILHLSLGDPVASVVGIK-KGEGNRILPGGKSLAGSLAAFLACSLSTLLLFGCCCRPPGDEGCDSDHVADSDPLSSLIFGHFSACTAVGRGGRDSGGSGTPLLL--WFALLGGVSGAVGELLPLGVDDNLSMPIVSGLTFLAL 831
            +S++ A  +CV   VLF +      T        A T Q +H +R+LQHA  G  +     +   DA   V +L    A F  LH LR+R K VD++Y+     LLR  EIR   +PG F+F+VG+ A +ALF   +A  +ILHLSLGDP AS+VG   +          KSL GSL   + CS+ ++L+                                          RDSG S     +  W A   G+  +V E + +GVDDNLSMP++S     A+
Sbjct:    2 SSTLVAWTLCVSAIVLFQFLIGGXRTDDRYARHDAVTRQXLHLQRKLQHALTGXMIFAASGFFTVDA--AVLVLFSCAAVFYVLHLLRKRFKRVDEVYLSCFHGLLRHDEIRKTVIPGAFYFLVGAGAVLALFPTPIARLAILHLSLGDPTASLVGTXXRYRRASSASTSKSLEGSLGCLVMCSVVSVLVIT----------------------------------------RDSGTSEFERFVRAWSA---GLCASVAERIHVGVDDNLSMPLLSACLMYAV 239          
BLAST of mRNA_Ecto-sp6_S_contig9.18019.1 vs. uniprot
Match: A0A8K1CVZ7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CVZ7_PYTOL)

HSP 1 Score: 105 bits (262), Expect = 8.010e-22
Identity = 88/283 (31.10%), Postives = 131/283 (46.29%), Query Frame = 1
Query:   22 SSVAAVLVCVGLPVLF------GYHNRQVETAPTAQSVHWRRRLQHATCGVAVTCGYKWVIRDARTVVAILSIV--CA-SFLALHRLRRRLKSVDKLYILLLGPLLRPQEI-RGELPGGFWFVVGSTAAVALFSKDVALQSILHLSLGDPVASVVGIKKGEGNRILPGGKSLAGSLAAFLACSLSTLLLFGCCCRPPGDEGCDSDHVADSDPLSSLIFGHFSACTAVGRGGRDSGGSGTPLLLWFALLGGVSGAVGELLPLGVDDNLSMPIVS-----GLTFL 825
            ++VA   +C+G+ V F      G     V+     Q +H +R+ QHA  G+ +     +V+     V A ++++  CA +F  LH LR+R K VD LY+     LLR +EI +  LPG F+F+VGS   ++LF   +A  +ILHLS GDP AS++G + G   R L  GKS  G L  ++  SL T +                                                SG  + +  + L G+  AV E +  G DDNLS+P++S     GLT+L
Sbjct:    6 TTVATWALCIGVIVAFQFLIGGGRARVDVKAIAKRQDLHLQRKAQHAVTGLMI-----YVVSGMFPVYADVTVLFTCALAFYGLHALRKRSKRVDMLYLRCFHGLLRREEIQKAVLPGAFYFLVGSGLVLSLFPTAIARLAILHLSFGDPSASLIGSRFGR--RRLASGKSFEGFLGCWIVASLVTWVE-----------------------------------------------SGISVSITHSALRGLCAAVAESIDFGWDDNLSLPVISALLQTGLTYL 234          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8G9_ECTSI1.440e-19597.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A485LBM6_9STRA1.220e-3536.43Aste57867_18956 protein n=1 Tax=Aphanomyces stella... [more]
A0A067D3P6_SAPPC3.900e-3034.45Phosphatidate cytidylyltransferase n=2 Tax=Saprole... [more]
W4H9K3_9STRA3.900e-3034.57Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024US71_9STRA3.690e-2933.21Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1V9Z468_9STRA2.420e-2833.47Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A1W0ABA5_9STRA8.050e-2835.29Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A6G0XP90_9STRA7.590e-2734.57Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A2D4BUY6_PYTIN3.770e-2332.86Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8K1CVZ7_PYTOL8.010e-2231.10Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:321932..325114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score559.7
Seed ortholog evalue8e-157
Seed eggNOG ortholog2880.D7G8G9
Preferred nameDGK1
Model size1854
KEGG rclassRC00002,RC00017
KEGG koko:K16368
KEGG ReactionR09944
KEGG Pathwayko00564,ko01100,ko01110,map00564,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004143,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006629,GO:0006644,GO:0006650,GO:0006654,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019637,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046473,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0098827,GO:1901576
Exons5
EggNOG free text desc.dolichyl monophosphate biosynthetic process
EggNOG OGsCOG0170@1,KOG4453@2759
Ec32 ortholog descriptionPhosphatidate cytidylyltransferase
Ec32 orthologEc-14_002980.1
EC2.7.1.174
Cds size864
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18019.1prot_Ecto-sp6_S_contig9.18019.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 322942..325114 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350518.8922627-UTR-Ecto-sp6_S_contig9:321931..3226381682350518.8922627-UTR-Ecto-sp6_S_contig9:321931..322638Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 321932..322638 -
1682350518.9037209-UTR-Ecto-sp6_S_contig9:322658..3229411682350518.9037209-UTR-Ecto-sp6_S_contig9:322658..322941Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 322659..322941 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350518.9130301-CDS-Ecto-sp6_S_contig9:322941..3232951682350518.9130301-CDS-Ecto-sp6_S_contig9:322941..323295Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 322942..323295 -
1682350518.923695-CDS-Ecto-sp6_S_contig9:323600..3236971682350518.923695-CDS-Ecto-sp6_S_contig9:323600..323697Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 323601..323697 -
1682350518.9333382-CDS-Ecto-sp6_S_contig9:324186..3243971682350518.9333382-CDS-Ecto-sp6_S_contig9:324186..324397Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 324187..324397 -
1682350518.943589-CDS-Ecto-sp6_S_contig9:324912..3251141682350518.943589-CDS-Ecto-sp6_S_contig9:324912..325114Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 324913..325114 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18019.1

>prot_Ecto-sp6_S_contig9.18019.1 ID=prot_Ecto-sp6_S_contig9.18019.1|Name=mRNA_Ecto-sp6_S_contig9.18019.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=288bp
MHYEYNTSSVAAVLVCVGLPVLFGYHNRQVETAPTAQSVHWRRRLQHATC
GVAVTCGYKWVIRDARTVVAILSIVCASFLALHRLRRRLKSVDKLYILLL
GPLLRPQEIRGELPGGFWFVVGSTAAVALFSKDVALQSILHLSLGDPVAS
VVGIKKGEGNRILPGGKSLAGSLAAFLACSLSTLLLFGCCCRPPGDEGCD
SDHVADSDPLSSLIFGHFSACTAVGRGGRDSGGSGTPLLLWFALLGGVSG
AVGELLPLGVDDNLSMPIVSGLTFLALRKCRTFDEPG*
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mRNA from alignment at Ecto-sp6_S_contig9:321932..325114-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18019.1 ID=mRNA_Ecto-sp6_S_contig9.18019.1|Name=mRNA_Ecto-sp6_S_contig9.18019.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3183bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:321932..325114- (Ectocarpus species6 EcLAC_371)
ATGCACTACGAGTACAATACGTCCAGTGTGGCCGCTGTCCTAGTGTGTGT GGGGCTTCCTGTGCTTTTTGGGTACCATAACCGACAAGTGGAAACTGCTC CAACGGCTCAAAGCGTGCACTGGCGAAGGAGGCTGCAACATGCAACCTGC GGTGTGGCCGTCACGTGCGGCTACAAGTGGGTCATTAGGGACGCGCGGAC AGGTGATACTGAGAGGGTTCATTTAGGCTGGACACTGTTGTATAAATACG TCATGAATGACACGGCGATTAAACGACATGAGCTCGAACGAATAGGAGGC AAACTCGGTGGCCATTTTTGTTGTGCACTTACGTAGAGATGTATGCAACA TGTTATCCCCCAGGGCACAGCAGAAACACTACACTACAAAGCTCTATTAC GTACTGACGTTGGGAATTCAGTATAACGGTTATCGATTCACGGCTGCTTC GCAAGTTCGATGTCATACACATATTCTATTGCCATGTGTACAACGGCTGG ACGGCTCTCTCTGCGAATTCGCGTGAATGCGGAGGAACTCTGGGGCGAAT CGAATTCTGAGAGGGCTACTGCTGTAAACATCTCTGTGCAATTGTAGTTC TACATCATACTCCATCGTATGGATGTCTGTTTCACAATACCTCTCCATGT GACACCATTGCTTTGACCTTCAAACGCCAATTGCCAACAATTTTCCCCGC TTCTCGGACAACAACAGTGGTGGCGATATTAAGTATCGTCTGCGCCAGCT TCCTCGCACTGCATCGGTTGAGGCGTCGCTTGAAAAGCGTGGACAAGCTA TATATCCTGCTGCTTGGACCCTTGCTCCGGCCACAAGAGATTCGCGGGGA GCTACCAGGCGGGTTCTGGTTCGTGGTTGGATCCACCGCGGCGGTGGCGC TGTTCTCGAAAGACGTGGCCCTCCAGAGGTAGAAAGGAAAAGGGTCAAAG CTTGAAGAACAGCAGTTCCACGTCCGCCGACGGCTGCGCGATAGCTAGCT GCCTTGGGGCCGCTTAGGTCGCGTCCTCAGCGACCTGTGTTGCAAGTTAC GGTTGTCAATTACATTGCTTACGGGCAGCGGTGTTATTACCTTTCGCTCG TCAAAACCTAATGGGTTCACCATGCCTTCCTTCCTTCAACCCCCATGCCA TGCCGTCGTGTTGTTGCGTACGTGTCAACCGTTCACAAGTTGCGCTCGGC CAACCTCTCGCGTAGTGCTAATCAGATGTTGTGCCATACCCTTCCCTTTG GTTCTCTCTTCCTCCGTCGTTTCGACCACCCCCCTTCCCTCCGTCTCTCT CTCTCTCTCGCTCTCTCTCTCTCTCTCTCTCACTCTCGCTGTCTTCTTCC CTCTCTATTTCTCCCCCCCCCGTTTTCCACTCCACTCGGGCCGACGTGCG TGCACGCCTCCCAAAAGCATTCTTCACCTCTCGTTGGGAGATCCTGTTGC TTCGGTGGTGGGCATAAAGAAGGGCGAGGGAAACCGAATACTGCCGGGAG GGAAATCCCTGGCGGTGAGACACGCCGCGGTGTGTATACGGGTAGGGATA CTGATAGCCATCCTACCGAATGTTGGCGGCAAGCCAGCTTGATTCACCTG TAGGTCATTCTAAGCCCCGACCACGGGGGATGTTCGTGAACTACACGTAG GTTTCCGGCCTGTATTCTCGATGTACAATTTCAACTCACTGATGTTGCCA CGAGTAACGTTGTTGATGCAGCTGCTCCCGCCCTCCGCACCTCTCACGCT CCGTCCGCGTCAACATTCCATCATTGCACGGGCTATCCGGGAACGACACC AACCAATTCGTGCCAAAAGGGGTCCTTAGCTGCATTCCTGGCGTGCTCAC TGTCGACCCTGCTGCTCTTCGGGTGCTGCTGTCGTCCACCTGGCGACGAG GGGTGCGATTCCGACCACGTTGCCGACAGCGATCCTCTCAGCAGTTTGAT CTTCGGCCACTTCAGCGCGTGTACTGCCGTTGGGCGGGGCGGTCGAGATA GCGGTGGTAGTGGGACGCCGCTGTTGCTGTGGTTTGCGTTGCTGGGCGGC GTGAGCGGGGCCGTCGGAGAGCTTCTACCCCTAGGGGTGGACGACAACCT TTCCATGCCAATAGTATCAGGCCTGACGTTCCTCGCGTTGAGAAAGTGTA GAACCTTCGATGAACCGGGATGATCACACAGGGGACATGTAAGAATCGCG TACGTTTGATATCGATCTCTGTGCATCTTGTGCATGACCCTCGTCCTGCT CACTCCTGGTAAAAACTTCAAAATATGCATAGACTATACACACCCATTTC AAGACGAAACCCCCGGATGGGTAGCAGTTCTGATGTAATTATTCTAATTC TAAGAGTAAATAATGTCAGCGGTTGCCTTTGCAGCAACAATACACTATAG ACTATGCCTAGATTTTGAAATTTCGGACCTGGGAGCAGCGTGGAATTAAA AAACTACTAGCATGTCTATGCATATATTATGCACAGCCAAATGGATAGTC GGATACCAACATGACCACCAAACTGCCTTGTTGGGCCTGTTGACCACAGG GCGCGTATGTCGTTGTAGACTATGTAGTATGTGGTGCTCAGCGGGGAACC GTAGAAACAGCAGTCAGTTTCCGCAACTGCTGAGAATCCATCGTTGCTAC AACAGCAGTACAAGTAGATGTAGCAAAATTCGGTCCGGATTCTTTGGTCA TCTTTGGTGATGGAGACAAGATCTTATGTTCTGCAGAATGGAACGAACCG TACTCCGAAGTGGATGGTTTGATATGTTGTGCGGGGGAGTACGAAAGTAC TTCATGATAGATGTATTCAGCAAACAAGCATAGCTTGGGGATAGACACCC AAAAGAGTGAAGATTCGGGGAAGAGGGGATGTTTTGTACTGAGGTCACGA CTCGTGATGTGAAGACAAAACATCAGCGACGGCAAAGTGTGTGATCTTGC ACACAGTGCGTCTATAGCAACGATTCGGACCTCAAATCCTAAACGCGGTC GTCATCTTGAAGAGAGGAAGGGGGGTAGCTGTGCTTCGAGAGTTCTCTAG CCTCGCTTAGTGAAGCCCGCGTGGAATTTTGACTGCTCGTTTAGCGGACG GACGAAGTAGCCCTCTTACTCGTCATGTACGACACTACTAGCCGAATCAA CTGCTGCTGTACATTGTCGATCGGGCTTCGCAC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:321932..325114-

>mRNA_Ecto-sp6_S_contig9.18019.1 ID=mRNA_Ecto-sp6_S_contig9.18019.1|Name=mRNA_Ecto-sp6_S_contig9.18019.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=864bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:321932..325114- (Ectocarpus species6 EcLAC_371)
ATGCACTACGAGTACAATACGTCCAGTGTGGCCGCTGTCCTAGTGTGTGT
GGGGCTTCCTGTGCTTTTTGGGTACCATAACCGACAAGTGGAAACTGCTC
CAACGGCTCAAAGCGTGCACTGGCGAAGGAGGCTGCAACATGCAACCTGC
GGTGTGGCCGTCACGTGCGGCTACAAGTGGGTCATTAGGGACGCGCGGAC
AGTGGTGGCGATATTAAGTATCGTCTGCGCCAGCTTCCTCGCACTGCATC
GGTTGAGGCGTCGCTTGAAAAGCGTGGACAAGCTATATATCCTGCTGCTT
GGACCCTTGCTCCGGCCACAAGAGATTCGCGGGGAGCTACCAGGCGGGTT
CTGGTTCGTGGTTGGATCCACCGCGGCGGTGGCGCTGTTCTCGAAAGACG
TGGCCCTCCAGAGCATTCTTCACCTCTCGTTGGGAGATCCTGTTGCTTCG
GTGGTGGGCATAAAGAAGGGCGAGGGAAACCGAATACTGCCGGGAGGGAA
ATCCCTGGCGGGGTCCTTAGCTGCATTCCTGGCGTGCTCACTGTCGACCC
TGCTGCTCTTCGGGTGCTGCTGTCGTCCACCTGGCGACGAGGGGTGCGAT
TCCGACCACGTTGCCGACAGCGATCCTCTCAGCAGTTTGATCTTCGGCCA
CTTCAGCGCGTGTACTGCCGTTGGGCGGGGCGGTCGAGATAGCGGTGGTA
GTGGGACGCCGCTGTTGCTGTGGTTTGCGTTGCTGGGCGGCGTGAGCGGG
GCCGTCGGAGAGCTTCTACCCCTAGGGGTGGACGACAACCTTTCCATGCC
AATAGTATCAGGCCTGACGTTCCTCGCGTTGAGAAAGTGTAGAACCTTCG
ATGAACCGGGATGA
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