mRNA_Ecto-sp6_S_contig9.18006.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp6_S_contig9.18006.1
Unique Name	mRNA_Ecto-sp6_S_contig9.18006.1
Type	mRNA
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)

Homology

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BLAST of mRNA_Ecto-sp6_S_contig9.18006.1 vs. uniprot
Match: D7G8I4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8I4_ECTSI)

HSP 1 Score: 769 bits (1987), Expect = 2.980e-280
Identity = 392/405 (96.79%), Postives = 394/405 (97.28%), Query Frame = 3

Query:   21 RPCS---SGTACCYLRFSQGWNPVATLNPGLTSAAARATPWSRAARVASARPSQHTRARAAIAAAVAPRDPWEAASQEAKEGDEKGKKKAMPRLKMDDSPIPEYLIDMLKESGDVDGDGKPVNDFFDPDEDDTFGTQRERDRLKEEELYYNDVPFGDMLFEGKAGGENAQDTGSLMDTSINNAVFEYGFPVEFFLDMLCRWGVTLPINQDRRLGDMIDAEQAAALCEALTGLDAADVRDNYLDDSLEDLSFDLDIPLPDLFQACAAQKINLPKGGDTHITIDEYKLLLDTVVDGGETSRARKLFDESRVTNRWTGQKEANSRELNQEDIAREIQKNNAGFGWREGPPILGDGEGELPLEQAHIGGRIFGEEIFASGYADSQHPGGWEEGEDEDGXXDFFFDDFGA 1226
            RPC+   + T CC LRFSQGWNPVATLNPGLTSAAARATPWSRAARVASARPSQHTRARAAIAAAVAPRDPWEAA QEAKEGDEKGKKKAMPRLKMDDSPIPEYLIDMLKESGDVD DGKPVNDFFDPDEDDTFGTQRERDRLKEEELYYNDVPFGDMLFEGKAGGENAQDTGSLMDTSINNAVFEYGFPVEFFLDMLCRWGVTLPINQDRRLGDMIDAEQAAALCEALTGLDAADVRDNYLDDSLEDLSFDLDIPLPDLFQACAAQKINLPKGGDTHITIDEYKLLLDTVVDGGETSRARKLFDESRVTNRWTGQKEANSRELNQEDIAREIQKNNAGFGWREGPPILGDGEGELPLEQAHIGGRIFGEEIFASGYADSQHPGGWEEGEDEDG   FFFDDFGA
Sbjct:    5 RPCALAAAATTCCCLRFSQGWNPVATLNPGLTSAAARATPWSRAARVASARPSQHTRARAAIAAAVAPRDPWEAAGQEAKEGDEKGKKKAMPRLKMDDSPIPEYLIDMLKESGDVDEDGKPVNDFFDPDEDDTFGTQRERDRLKEEELYYNDVPFGDMLFEGKAGGENAQDTGSLMDTSINNAVFEYGFPVEFFLDMLCRWGVTLPINQDRRLGDMIDAEQAAALCEALTGLDAADVRDNYLDDSLEDLSFDLDIPLPDLFQACAAQKINLPKGGDTHITIDEYKLLLDTVVDGGETSRARKLFDESRVTNRWTGQKEANSRELNQEDIAREIQKNNAGFGWREGPPILGDGEGELPLEQAHIGGRIFGEEIFASGYADSQHPGGWEEGEDEDGDDGFFFDDFGA 409

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BLAST of mRNA_Ecto-sp6_S_contig9.18006.1 vs. uniprot
Match: A0A835ZEP7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEP7_9STRA)

HSP 1 Score: 130 bits (326), Expect = 4.470e-32
Identity = 62/137 (45.26%), Postives = 90/137 (65.69%), Query Frame = 3

Query:  465 DVPFGDMLFEGKAGGENAQDTGSLMDTSINNAVFEYGFPVEFFLDMLCRWGVTLPINQDRRLGDMIDAEQAAALCEALTGLDAADVRDNYLDDSLEDLSFDLDIPLPDLFQACAAQKINLPKGGDTHITIDEYKLLL 875
            D+P G +L  G       +D G L D ++ +   +Y FPVEF  D+LCRWGV+ PI  D +LG +++ EQA A+ EALT +D A V D YLDD++E+L++ LD+P  D+F  C  ++ NLP G +TH+T +EY+ LL
Sbjct:    2 DIPSGSLL--GNMAFNPERDEGGLGDVTLADIADDYNFPVEFIYDVLCRWGVSPPIKLDDKLGSLVNGEQAFAVVEALTSVDPATVHDFYLDDTIEELAWALDVPPADIFAVCGRRRFNLPLGAETHLTNEEYRFLL 136

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BLAST of mRNA_Ecto-sp6_S_contig9.18006.1 vs. uniprot
Match: F0YKG5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKG5_AURAN)

HSP 1 Score: 82.8 bits (203), Expect = 2.460e-13
Identity = 40/111 (36.04%), Postives = 68/111 (61.26%), Query Frame = 3

Query:  540 DTSINNAVFEYGFPVEFFLDMLCRWGVTLPINQDRRLGDMIDAEQAAALCEALTGLDAADVRDNYLDDSLEDLSFDLDIPLPDLFQACAAQKINLPKGGDTHITIDEYKLL 872
            D+++ +   +Y FP+ +  D +  +G+  PI  D R+ D++DA+QA AL EA+T LDAA+V D Y+   L  ++  L+ PL ++F AC  +   LP G +T +  ++Y+ L
Sbjct:  167 DSTVADVADDYRFPISYVADAILGFGIPPPIRDDARIADILDADQAFALLEAVTSLDAAEVEDAYVAFDLARVAGLLEAPLAEVFAACVDEGFGLPHGVETQLRREQYEAL 277

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BLAST of mRNA_Ecto-sp6_S_contig9.18006.1 vs. uniprot
Match: B7FWK0_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FWK0_PHATC)

HSP 1 Score: 77.8 bits (190), Expect = 1.740e-12
Identity = 39/114 (34.21%), Postives = 66/114 (57.89%), Query Frame = 3

Query:  519 QDTGSLMDTSINNAVFEYGFPVEFFLDMLCRWGVTLPINQDRRLGDMIDAEQAAALCEALTGLDAADVRDNYLDDSLEDLSFDLDIPLPDLFQACAAQKINLPKGGDTHITIDE 860
            ++ G L D+++N    +YG PV +  D+LC WGV +PI    RLGD++  EQA ++ EA+  LD + + D Y + +L  L  + DI L   F+    +  +LP G +T + +++
Sbjct:  156 REQGFLGDSTLNEIATDYGVPVCYLADVLCMWGVPVPIQVHDRLGDLVTGEQAFSILEAINSLDISALHDRYSNHNLIQLCAEYDIELQTAFEMAMKEGWSLPFGVNTCLRVEQ 269

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BLAST of mRNA_Ecto-sp6_S_contig9.18006.1 vs. uniprot
Match: A0A7R9WWR6_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WWR6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.640e-11
Identity = 40/123 (32.52%), Postives = 69/123 (56.10%), Query Frame = 3

Query:  519 QDTGSLMDTSINNAVFEYGFPVEFFLDMLCRWGVTLPINQDRRLGDMIDAEQAAALCEALTGLDAADVRDNYLDDSLEDLSFDLDIPLPDLFQACAAQKINLPKGGDTHITIDEYKLLLDTVV 887
            ++ G L D+++ +   +Y  P+ +  D+LC WGV +PI+ + +LGD++  EQA A+ EA+  LD   ++D Y + +L  +    +I L D FQ    +  +LP G  TH+  ++   L  T V
Sbjct:  221 REPGYLGDSTLTDIATDYSVPICYLADVLCMWGVPVPIDPNSQLGDLVTGEQAFAILEAVYSLDVGVLQDRYSNQNLVQVCDLYEIELKDAFQFAMKEGWSLPFGVQTHLRTEQEDELKRTYV 343

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BLAST of mRNA_Ecto-sp6_S_contig9.18006.1 vs. uniprot
Match: A0A7S4A635_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A635_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.470e-11
Identity = 41/128 (32.03%), Postives = 69/128 (53.91%), Query Frame = 3

Query:  540 DTSINNAVFEYGFPVEFFLDMLCRWGVTLPINQDRRLGDMIDAEQAAALCEALTGLDAADVRDNYLDDSLEDLSFDLDIPLPDLFQACAAQKINLPKGGDTHITIDEYKLLLDTVVDGGETSRARKLF 923
            D ++     +Y FPV +  D++  +GV  PI+    + D++DA+QA AL EA+T LDA++V D Y+   L+  +  L+  L ++F  C      LP G +T +  D++  +  T+  G  +  AR  F
Sbjct:  107 DLTVEQVAVDYRFPVAYVADVITGFGVQPPISDAAVIRDLLDADQAFALLEAVTSLDASEVDDAYVSFGLDGCARRLEADLAEVFALCVDNNFALPHGVETRLRRDQFDTIARTL--GWRSDEARLPF 232

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig9.18006.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig9.18006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6


Match Name	E-value	Identity	Description
D7G8I4_ECTSI	2.980e-280	96.79	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835ZEP7_9STRA	4.470e-32	45.26	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
F0YKG5_AURAN	2.460e-13	36.04	Uncharacterized protein n=1 Tax=Aureococcus anopha...	[more]
B7FWK0_PHATC	1.740e-12	34.21	Predicted protein (Fragment) n=2 Tax=Phaeodactylum...	[more]
A0A7R9WWR6_9STRA	1.640e-11	32.52	Hypothetical protein n=1 Tax=Craspedostauros austr...	[more]
A0A7S4A635_9STRA	3.470e-11	32.03	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig9	contig	Ecto-sp6_S_contig9:190556..194088 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	82.8
Seed ortholog evalue	3.1e-13
Seed eggNOG ortholog	44056.XP_009040959.1
Preferred name	PSEN1
Model size	1229
KEGG ko	ko:K04505,ko:K04522,ko:K06060
KEGG Pathway	ko04310,ko04330,ko04722,ko05010,ko05165,map04310,map04330,map04722,map05010,map05165
KEGG Module	M00682
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000041,GO:0000045,GO:0000122,GO:0000186,GO:0000323,GO:0000775,GO:0000776,GO:0001501,GO:0001505,GO:0001568,GO:0001654,GO:0001666,GO:0001708,GO:0001754,GO:0001756,GO:0001764,GO:0001773,GO:0001775,GO:0001919,GO:0001921,GO:0001932,GO:0001933,GO:0001934,GO:0001942,GO:0001944,GO:0001945,GO:0001946,GO:0001947,GO:0002009,GO:0002027,GO:0002036,GO:0002038,GO:0002119,GO:0002164,GO:0002244,GO:0002252,GO:0002253,GO:0002263,GO:0002265,GO:0002274,GO:0002275,GO:0002283,GO:0002285,GO:0002286,GO:0002366,GO:0002376,GO:0002429,GO:0002443,GO:0002444,GO:0002446,GO:0002520,GO:0002521,GO:0002573,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003002,GO:0003006,GO:0003007,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003143,GO:0003407,GO:0003674,GO:0003824,GO:0004175,GO:0004190,GO:0005215,GO:0005216,GO:0005261,GO:0005262,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005637,GO:0005640,GO:0005694,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005764,GO:0005765,GO:0005766,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005783,GO:0005790,GO:0005791,GO:0005794,GO:0005798,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005887,GO:0005929,GO:0005938,GO:0006355,GO:0006357,GO:0006464,GO:0006469,GO:0006486,GO:0006508,GO:0006509,GO:0006518,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006825,GO:0006836,GO:0006839,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006897,GO:0006903,GO:0006909,GO:0006914,GO:0006915,GO:0006928,GO:0006936,GO:0006941,GO:0006950,GO:0006955,GO:0006974,GO:0006979,GO:0006996,GO:0007010,GO:0007033,GO:0007154,GO:0007155,GO:0007165,GO:0007166,GO:0007175,GO:0007176,GO:0007219,GO:0007220,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007444,GO:0007447,GO:0007450,GO:0007507,GO:0007548,GO:0007568,GO:0007610,GO:0007611,GO:0007612,GO:0007613,GO:0007614,GO:0007626,GO:0008013,GO:0008015,GO:0008016,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008233,GO:0008283,GO:0008284,GO:0008306,GO:0008324,GO:0008406,GO:0008544,GO:0008593,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009266,GO:0009581,GO:0009582,GO:0009605,GO:0009628,GO:0009653,GO:0009719,GO:0009790,GO:0009791,GO:0009792,GO:0009799,GO:0009855,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009952,GO:0009953,GO:0009966,GO:0009967,GO:0009968,GO:0009986,GO:0009987,GO:0010001,GO:0010033,GO:0010243,GO:0010453,GO:0010467,GO:0010468,GO:0010469,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0010721,GO:0010769,GO:0010771,GO:0010941,GO:0010942,GO:0010958,GO:0010975,GO:0010976,GO:0010977,GO:0012501,GO:0012505,GO:0012506,GO:0014002,GO:0015031,GO:0015075,GO:0015085,GO:0015267,GO:0015318,GO:0015630,GO:0015677,GO:0015695,GO:0015696,GO:0015833,GO:0015871,GO:0016020,GO:0016021,GO:0016043,GO:0016048,GO:0016055,GO:0016079,GO:0016080,GO:0016192,GO:0016234,GO:0016235,GO:0016236,GO:0016324,GO:0016477,GO:0016485,GO:0016787,GO:0017015,GO:0017156,GO:0018991,GO:0019098,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019725,GO:0019866,GO:0019867,GO:0019904,GO:0021532,GO:0021537,GO:0021543,GO:0021782,GO:0021795,GO:0021870,GO:0021885,GO:0021895,GO:0021904,GO:0021915,GO:0021953,GO:0021987,GO:0022008,GO:0022029,GO:0022404,GO:0022405,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0022610,GO:0022803,GO:0022838,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0023061,GO:0030001,GO:0030003,GO:0030016,GO:0030017,GO:0030018,GO:0030030,GO:0030054,GO:0030097,GO:0030099,GO:0030111,GO:0030141,GO:0030154,GO:0030162,GO:0030165,GO:0030182,GO:0030318,GO:0030323,GO:0030324,GO:0030326,GO:0030424,GO:0030425,GO:0030426,GO:0030427,GO:0030587,GO:0030659,GO:0030667,GO:0030900,GO:0031090,GO:0031149,GO:0031150,GO:0031154,GO:0031224,GO:0031226,GO:0031293,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031330,GO:0031331,GO:0031333,GO:0031344,GO:0031345,GO:0031346,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031401,GO:0031410,GO:0031594,GO:0031674,GO:0031965,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031982,GO:0032091,GO:0032092,GO:0032147,GO:0032268,GO:0032269,GO:0032270,GO:0032386,GO:0032388,GO:0032434,GO:0032436,GO:0032469,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032890,GO:0032892,GO:0032940,GO:0032991,GO:0033036,GO:0033157,GO:0033158,GO:0033160,GO:0033267,GO:0033554,GO:0033619,GO:0033673,GO:0033674,GO:0034205,GO:0034220,GO:0034641,GO:0034645,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035050,GO:0035107,GO:0035108,GO:0035113,GO:0035220,GO:0035222,GO:0035239,GO:0035253,GO:0035282,GO:0035295,GO:0035333,GO:0035577,GO:0036064,GO:0036211,GO:0036230,GO:0036269,GO:0036293,GO:0036303,GO:0036477,GO:0040011,GO:0040028,GO:0042058,GO:0042059,GO:0042063,GO:0042110,GO:0042119,GO:0042127,GO:0042175,GO:0042176,GO:0042177,GO:0042221,GO:0042303,GO:0042306,GO:0042307,GO:0042325,GO:0042326,GO:0042327,GO:0042391,GO:0042461,GO:0042462,GO:0042500,GO:0042582,GO:0042592,GO:0042633,GO:0042659,GO:0042802,GO:0042803,GO:0042886,GO:0042981,GO:0042982,GO:0042987,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043011,GO:0043025,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043086,GO:0043170,GO:0043198,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043269,GO:0043270,GO:0043292,GO:0043299,GO:0043312,GO:0043392,GO:0043393,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043413,GO:0043473,GO:0043523,GO:0043524,GO:0043549,GO:0043588,GO:0043589,GO:0043603,GO:0043949,GO:0044057,GO:0044070,GO:0044085,GO:0044087,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044429,GO:0044430,GO:0044433,GO:0044437,GO:0044441,GO:0044444,GO:0044446,GO:0044449,GO:0044459,GO:0044463,GO:0044464,GO:0044671,GO:0045055,GO:0045121,GO:0045137,GO:0045165,GO:0045176,GO:0045177,GO:0045184,GO:0045202,GO:0045296,GO:0045321,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045665,GO:0045666,GO:0045732,GO:0045747,GO:0045859,GO:0045860,GO:0045861,GO:0045862,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045936,GO:0045937,GO:0046530,GO:0046649,GO:0046822,GO:0046824,GO:0046873,GO:0046903,GO:0046907,GO:0046983,GO:0048066,GO:0048143,GO:0048167,GO:0048190,GO:0048286,GO:0048468,GO:0048471,GO:0048489,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048538,GO:0048562,GO:0048563,GO:0048568,GO:0048569,GO:0048580,GO:0048583,GO:0048584,GO:0048585,GO:0048592,GO:0048598,GO:0048608,GO:0048609,GO:0048646,GO:0048666,GO:0048699,GO:0048705,GO:0048708,GO:0048729,GO:0048731,GO:0048732,GO:0048736,GO:0048837,GO:0048854,GO:0048856,GO:0048869,GO:0048870,GO:0048878,GO:0050435,GO:0050673,GO:0050730,GO:0050732,GO:0050767,GO:0050768,GO:0050769,GO:0050770,GO:0050771,GO:0050773,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050801,GO:0050804,GO:0050806,GO:0050808,GO:0050818,GO:0050820,GO:0050839,GO:0050851,GO:0050852,GO:0050877,GO:0050890,GO:0050896,GO:0050931,GO:0051049,GO:0051050,GO:0051093,GO:0051094,GO:0051098,GO:0051099,GO:0051100,GO:0051101,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051336,GO:0051338,GO:0051340,GO:0051347,GO:0051348,GO:0051352,GO:0051402,GO:0051438,GO:0051444,GO:0051563,GO:0051580,GO:0051582,GO:0051588,GO:0051590,GO:0051604,GO:0051606,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0051952,GO:0051954,GO:0051955,GO:0051957,GO:0051960,GO:0051961,GO:0051962,GO:0051966,GO:0052547,GO:0052548,GO:0055037,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0060041,GO:0060047,GO:0060048,GO:0060070,GO:0060075,GO:0060173,GO:0060249,GO:0060255,GO:0060284,GO:0060291,GO:0060322,GO:0060341,GO:0060429,GO:0060541,GO:0060548,GO:0060562,GO:0060828,GO:0060998,GO:0060999,GO:0061053,GO:0061062,GO:0061097,GO:0061099,GO:0061136,GO:0061371,GO:0061458,GO:0061900,GO:0061919,GO:0065007,GO:0065008,GO:0065009,GO:0070001,GO:0070011,GO:0070050,GO:0070085,GO:0070201,GO:0070482,GO:0070588,GO:0070765,GO:0070838,GO:0070887,GO:0070925,GO:0070997,GO:0071310,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071900,GO:0071902,GO:0071944,GO:0072358,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0080090,GO:0090087,GO:0090092,GO:0090287,GO:0090316,GO:0090596,GO:0090647,GO:0090702,GO:0097028,GO:0097447,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098589,GO:0098590,GO:0098609,GO:0098655,GO:0098657,GO:0098660,GO:0098662,GO:0098687,GO:0098771,GO:0098773,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0098857,GO:0098916,GO:0099003,GO:0099080,GO:0099081,GO:0099120,GO:0099177,GO:0099503,GO:0099504,GO:0099512,GO:0099536,GO:0099537,GO:0099568,GO:0099643,GO:0106027,GO:0120025,GO:0120035,GO:0120036,GO:0120038,GO:0140029,GO:0140096,GO:0150034,GO:0198738,GO:1900006,GO:1900180,GO:1900182,GO:1901135,GO:1901137,GO:1901184,GO:1901185,GO:1901214,GO:1901215,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901800,GO:1902041,GO:1902042,GO:1902043,GO:1902531,GO:1902533,GO:1902679,GO:1902680,GO:1902903,GO:1902905,GO:1903050,GO:1903051,GO:1903052,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1903364,GO:1903506,GO:1903507,GO:1903508,GO:1903522,GO:1903789,GO:1903793,GO:1903827,GO:1903829,GO:1903844,GO:1903959,GO:1903961,GO:1904589,GO:1904591,GO:1904645,GO:1904646,GO:1904796,GO:1904797,GO:1904951,GO:1905037,GO:1905114,GO:1905906,GO:1905908,GO:1990535,GO:2000026,GO:2000058,GO:2000059,GO:2000060,GO:2000112,GO:2000113,GO:2000272,GO:2000677,GO:2000678,GO:2001023,GO:2001025,GO:2001141,GO:2001233,GO:2001234,GO:2001235,GO:2001236,GO:2001237,GO:2001238
Exons	6
EggNOG free text desc.	subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors
EggNOG OGs	KOG2736@1,KOG2736@2759
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-14_003130.1
Cds size	948
COG Functional cat.	O
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko01002

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig9.18006.1	prot_Ecto-sp6_S_contig9.18006.1	Ectocarpus species6 EcLAC_371	polypeptide	Ecto-sp6_S_contig9 190837..194088 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682350517.177924-UTR-Ecto-sp6_S_contig9:190555..190836	1682350517.177924-UTR-Ecto-sp6_S_contig9:190555..190836	Ectocarpus species6 EcLAC_371	UTR	Ecto-sp6_S_contig9 190556..190836 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682350517.193479-CDS-Ecto-sp6_S_contig9:190836..190844	1682350517.193479-CDS-Ecto-sp6_S_contig9:190836..190844	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig9 190837..190844 +
1682350517.2008882-CDS-Ecto-sp6_S_contig9:191455..191615	1682350517.2008882-CDS-Ecto-sp6_S_contig9:191455..191615	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig9 191456..191615 +
1682350517.2087247-CDS-Ecto-sp6_S_contig9:192127..192288	1682350517.2087247-CDS-Ecto-sp6_S_contig9:192127..192288	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig9 192128..192288 +
1682350517.217326-CDS-Ecto-sp6_S_contig9:192552..192661	1682350517.217326-CDS-Ecto-sp6_S_contig9:192552..192661	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig9 192553..192661 +
1682350517.2260957-CDS-Ecto-sp6_S_contig9:193013..193108	1682350517.2260957-CDS-Ecto-sp6_S_contig9:193013..193108	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig9 193014..193108 +
1682350517.2351327-CDS-Ecto-sp6_S_contig9:193673..194088	1682350517.2351327-CDS-Ecto-sp6_S_contig9:193673..194088	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig9 193674..194088 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp6_S_contig9:190556..194088+
coding sequence from alignment at Ecto-sp6_S_contig9:190556..194088+

protein sequence of mRNA_Ecto-sp6_S_contig9.18006.1

>prot_Ecto-sp6_S_contig9.18006.1 ID=prot_Ecto-sp6_S_contig9.18006.1|Name=mRNA_Ecto-sp6_S_contig9.18006.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=316bp
MPRLKMDDSPIPEYLIDMLKESGDVDGDGKPVNDFFDPDEDDTFGTQRER
DRLKEEELYYNDVPFGDMLFEGKAGGENAQDTGSLMDTSINNAVFEYGFP
VEFFLDMLCRWGVTLPINQDRRLGDMIDAEQAAALCEALTGLDAADVRDN
YLDDSLEDLSFDLDIPLPDLFQACAAQKINLPKGGDTHITIDEYKLLLDT
VVDGGETSRARKLFDESRVTNRWTGQKEANSRELNQEDIAREIQKNNAGF
GWREGPPILGDGEGELPLEQAHIGGRIFGEEIFASGYADSQHPGGWEEGE
DEDGDDDFFFDDFGA*

mRNA from alignment at Ecto-sp6_S_contig9:190556..194088+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp6_S_contig9.18006.1 ID=mRNA_Ecto-sp6_S_contig9.18006.1|Name=mRNA_Ecto-sp6_S_contig9.18006.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3533bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:190556..194088+ (Ectocarpus species6 EcLAC_371)
ATGCGTCGGTGTAGACCTTGCGCCCTTGCAGCAGCGGCACCGCGTGCTGC
TACTTGAGGTTCAGCCAAGGGTGGAACCCCGTTGCCACTCTGAACCCCGG
TTTGACCTCTGCGGCAGCCAGAGCTACACCATGGTCTCGTGCGGCTCGGG
TGGCTTCAGCTCGGCCATCCCAACATACCCGAGCGAGAGCAGCAATTGCA
GCAGCGGTAGCACCACGTGATCCCTGGGAAGCAGCTAGCCAGGAAGCGAA
GGAGGGCGACGAGAAAGGGAAAAAGAAGGCTATGCCACGGTGAGTGTGAG
GGTCGTGTACATAGTTGAAGTTGGTGCGTATTCTGGTTGGCTCGGGCAGC
AACTCCTAACCGCCTCAACAAGGGCCCACAGCTCGATATCACCGTTGCGA
AGGCGCTACGGCTCGCAACTGCAATACTGGTACAATGGTAGTCAGAGTAT
GAGGCAAGCGTCGCAAAACCAGGGCGGTGTTGGTCTAGAATGCTGCGTCG
CGCTCGCTGTTGGCTTCACTGGATGTAATTGCTGTAAGGTGTTCGTGGCT
GCTGACCTGACCGCATCCTTGCGCCGTCCAAGCCGTATGCCACTGCTGCG
AACGCGTCGCACCAGGCACGTCCAATGTTGACATGAATGGATTGCAGGAC
CCCACATGCAATAACCTACCTGATATTGTCAGAAAGAATGGATTATTCCG
CCTGTTCGTATGTTCACGTTGTAAACTCCTCAACTTGTTTGACGGAATTC
AGTCACGTAGTCTCGCTCTGTTGACGTCGTTTCGTGTCGTCGACGTACAG
GGGGCCAGCGCCTACGCAGCTGGTCTCATACAACGACCCCCCCGTGTTCC
ACACCGTGCCACCACCCCCTCCTCACACAACAAAACAAATGTGAAACCAG
CTTAAAGATGGACGACTCTCCCATCCCGGAATACCTGATCGACATGCTCA
AAGAGTCGGGAGACGTCGACGGAGACGGCAAACCCGTGAACGATTTCTTC
GATCCGGATGAGGACGACACGTTCGGCACTCAGAGAGAACGGGATCGCCT
CAAGGAAGAGGTAAATCGTACTTGAGTAACACATTGTTTGTGAATGAAGC
GCTTCGAAATTTGAGGGCGTGCCGAGCGGGCTATGTTGTTACTGCTGTTG
TTGGAGGTTTTTGTCCTTATTTGGTATTAGTAGGGCGCAATGTAGCTGAC
AGCTTCACGTTAACCTCGACACACGAAAGTTTTGAAGGTCACGAGGAATT
CCTGACGATGGGCTCGAAACTGCTGCACACTTTGAGAGGGTGACTGGGAG
AGCATCAACGGGGTGTTCCGTCCCACATTCCGATGTATGTGGCATGTTTC
CCAATTTCGTGGATTCTGCTCCGTTCGGCCTTTCCAACAATAAACAATGC
CCACCCCGCCTAAAACACGTTTCTTCGATGCAAATCCTATCTCCAAACCC
TATCTCCAAAACTATAGTCCCACTCCTCCCAAAGAGACCCACCTTTTCTT
GCTCTCATGTTTGCCGCCCTACCGCCCATAACCACCCCCACCCCAACCCC
ACCCCCTGCACGCGGATGGCAGGAACTCTACTACAACGACGTGCCGTTTG
GGGACATGCTCTTCGAGGGCAAGGCTGGCGGCGAGAATGCGCAGGACACG
GGCAGTCTCATGGATACCTCCATCAACAACGCGGTCTTCGAATATGGTTT
TCCAGTGGAATTCTTCCTCGACATGCTCTGCAGGTATATACGATGCCACA
AAGAGCCCGTTCTCCTCTCAAGAGGTGTTACGAATGGCAAAGGACGCCAT
CGTTACTGAGACCCTTTGCCGTTGCTGAGAAAATCGGGCACGGAAACACA
ACCACAATGCAGCTGTAACTCAGCTTGGCGAGGCGATTGTTTGGCCCCTT
GGACACCAAACACGATGGGGTCATTTAAGCCACGTGGACGGTTTCGCACC
CCCTCCTTTTCCATATTGCTGTTGTATTTCTGCTGTGTTTACCGAAGGTG
GGGAGTTACCCTGCCGATCAATCAAGACCGTCGGCTGGGGGATATGATCG
ACGCGGAGCAGGCGGCGGCACTTTGCGAAGCTCTCACGGGCTTGGATGCT
GCGGATGTAAGCCAAAAGTAGTGTCGGCAAGAGGCAATCGAGAGAGGAAC
AGATAGACAGAGATGCGAGGGACGGGGAGTACCGAGAGAGGGAGACAAGA
GACAAGGGCGCATGAGACAAGCGTTAGAGAGTTTAGAgGGAGCAGACAAA
CAGAGAGAACACGACAGTTTATGCATATTGTCGAGGGAGCCTAATAATAT
GGGTGAGTCACAACAGCTACCACAATACCCATTTTTTGTACTTCTTTCCT
TGGAGATTTCAGTGAGGTACACGCGAGATCATTTCGTTGTCTTCCTTGCG
CTCGCCTTTTCTTGCTCTTCGCTCTTGGGTCCGTTGACTGGCATCGTCTC
CAAACAAGGTTCGAGATAATTACCTCGACGACTCCCTGGAAGACCTGTCG
TTCGATCTGGACATCCCTCTGCCGGATCTTTTCCAGGCTTGCGCCGCACA
AAAGTGAGCGTCACTGACGGCTTGCTTGCTTTGTCGGCCTGGTTGGTGAA
CGGCCATGTATCGGTGGGATGCCACTCCCAGAACCACGATCTGGAGCGGC
TCGCGTACATTGCTCGATCACGCGGTAATGCCCAAGTGCCACGTGTCACT
TGCTGGTAGGCCTGGCTCGCACGAAAGGATTGTGTCCATGCGTGTTTGCA
TGGAAAAGATTGTAGTTCGAGGCCGAAATATTCACGTTGAACCTGGGCAT
AGGTTTTGCCCGAATCCTGTACCGTGTCCTCACGCGTATTCACAACTTTG
TCGTCGTTTTCCAAGATTCTGGTTGACACGTGTTGTCAACCACCCCAACC
CAACCCATTTCAAAACGCTGGATCCCAACGTACCAATCCACCTTCCGGAC
TCATCAACCCTAAGTTTCACCTCTGCTCTCCACACAAACAGCACCCCCTT
ATGATTATGTGTTTCAAGTGACTCTTTCCAGGACAAGAGCTGGCCCATGA
TCCGCTCCGTAACACTAGGTTTGATGTTCGGACCTACACCCCCGCTCACC
CCGCTCTGCCTCGAGCAGAATCAACCTCCCGAAGGGCGGGGACACGCACA
TCACGATCGACGAGTACAAGCTTCTCCTCGATACCGTGGTCGATGGCGGG
GAGACGAGCCGCGCCCGCAAGCTCTTCGACGAGAGCCGCGTGACCAACCG
CTGGACCGGGCAGAAGGAGGCCAACAGCAGGGAGCTCAACCAGGAGGACA
TCGCGAGGGAGATACAGAAGAACAACGCCGGGTTCGGCTGGAGAGAAGGT
CCCCCCATCCTGGGAGATGGGGAGGGAGAGCTCCCCCTCGAGCAGGCCCA
CATCGGGGGCAGGATTTTCGGGGAAGAGATCTTCGCGTCGGGGTACGCAG
ATTCGCAGCACCCCGGGGGGTGGGAGGAAGGGGAGGATGAGGATGGAGAC
GACGATTTTTTCTTTGACGACTTCGGTGCATAG

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:190556..194088+

>mRNA_Ecto-sp6_S_contig9.18006.1 ID=mRNA_Ecto-sp6_S_contig9.18006.1|Name=mRNA_Ecto-sp6_S_contig9.18006.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=948bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:190556..194088+ (Ectocarpus species6 EcLAC_371)
ATGCCACGCTTAAAGATGGACGACTCTCCCATCCCGGAATACCTGATCGA
CATGCTCAAAGAGTCGGGAGACGTCGACGGAGACGGCAAACCCGTGAACG
ATTTCTTCGATCCGGATGAGGACGACACGTTCGGCACTCAGAGAGAACGG
GATCGCCTCAAGGAAGAGGAACTCTACTACAACGACGTGCCGTTTGGGGA
CATGCTCTTCGAGGGCAAGGCTGGCGGCGAGAATGCGCAGGACACGGGCA
GTCTCATGGATACCTCCATCAACAACGCGGTCTTCGAATATGGTTTTCCA
GTGGAATTCTTCCTCGACATGCTCTGCAGGTGGGGAGTTACCCTGCCGAT
CAATCAAGACCGTCGGCTGGGGGATATGATCGACGCGGAGCAGGCGGCGG
CACTTTGCGAAGCTCTCACGGGCTTGGATGCTGCGGATGTTCGAGATAAT
TACCTCGACGACTCCCTGGAAGACCTGTCGTTCGATCTGGACATCCCTCT
GCCGGATCTTTTCCAGGCTTGCGCCGCACAAAAAATCAACCTCCCGAAGG
GCGGGGACACGCACATCACGATCGACGAGTACAAGCTTCTCCTCGATACC
GTGGTCGATGGCGGGGAGACGAGCCGCGCCCGCAAGCTCTTCGACGAGAG
CCGCGTGACCAACCGCTGGACCGGGCAGAAGGAGGCCAACAGCAGGGAGC
TCAACCAGGAGGACATCGCGAGGGAGATACAGAAGAACAACGCCGGGTTC
GGCTGGAGAGAAGGTCCCCCCATCCTGGGAGATGGGGAGGGAGAGCTCCC
CCTCGAGCAGGCCCACATCGGGGGCAGGATTTTCGGGGAAGAGATCTTCG
CGTCGGGGTACGCAGATTCGCAGCACCCCGGGGGGTGGGAGGAAGGGGAG
GATGAGGATGGAGACGACGATTTTTTCTTTGACGACTTCGGTGCATAG