mRNA_Ecto-sp6_S_contig9.18005.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18005.1
Unique NamemRNA_Ecto-sp6_S_contig9.18005.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18005.1 vs. uniprot
Match: D7G8I5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8I5_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 7.850e-55
Identity = 96/101 (95.05%), Postives = 98/101 (97.03%), Query Frame = 1 
Query:  331 LQTKRQALLDKPREITVDDALIAPTSVARQHTHKTAEEHDGDGGGHGEHSKKTTKAALPTADIAEVSDRGGRVSDARGGPVWKTRKEFDKAAAAAAFSGKR 633
            L+TKRQALLDKPREITVDDALIAPTSVARQHTHKTAEE+DGDGGGHGEHS KT KA LPTADIAEVSDRGGRVSDARGGPVWKTRKEFDKAAAAAAFSGKR
Sbjct:  212 LRTKRQALLDKPREITVDDALIAPTSVARQHTHKTAEEYDGDGGGHGEHSTKTKKAVLPTADIAEVSDRGGRVSDARGGPVWKTRKEFDKAAAAAAFSGKR 312
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8I5_ECTSI7.850e-5595.05Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:187848..188780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size767
Hectar predicted targeting categoryother localisation
Exons2
Cds size486
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350517.1218848-CDS-Ecto-sp6_S_contig9:187847..1881711682350517.1218848-CDS-Ecto-sp6_S_contig9:187847..188171Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 187848..188171 -
1682350517.1322372-CDS-Ecto-sp6_S_contig9:188339..1885011682350517.1322372-CDS-Ecto-sp6_S_contig9:188339..188501Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 188340..188501 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350517.1418102-UTR-Ecto-sp6_S_contig9:188501..1887801682350517.1418102-UTR-Ecto-sp6_S_contig9:188501..188780Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 188502..188780 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18005.1prot_Ecto-sp6_S_contig9.18005.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 187848..188501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18005.1

>prot_Ecto-sp6_S_contig9.18005.1 ID=prot_Ecto-sp6_S_contig9.18005.1|Name=mRNA_Ecto-sp6_S_contig9.18005.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=162bp
MYVIVMVAPPLVTLRNPLQTKRQALLDKPREITVDDALIAPTSVARQHTH
KTAEEHDGDGGGHGEHSKKTTKAALPTADIAEVSDRGGRVSDARGGPVWK
TRKEFDKAAAAAAFSGKRGGGRGGGRGSGGKQGEKKGGGGGGRGAGEEQG
KKERGNRRGGGG
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mRNA from alignment at Ecto-sp6_S_contig9:187848..188780-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18005.1 ID=mRNA_Ecto-sp6_S_contig9.18005.1|Name=mRNA_Ecto-sp6_S_contig9.18005.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=933bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:187848..188780- (Ectocarpus species6 EcLAC_371)
GTAGCGACGAAGAGAAGTTTGCTGACCTTCCGCCCGCCTTGAGAGTGAGA
GACGACCCCTGTATGTTGAGATGGGAAGGATCATTGTATTCGCAGAGCAG
TGTGGAGGTCAGGATATGGAGATTCAGGAAGCACAGACGCACGTACACTC
AACAGTAGTGGTAATTGTGTCGTGTACAATAATATTCTCAGTGTTTGGTA
CAATGGTTGTGTGCGATCGATCAACAGTAGCACCCCCTGTCTAGCGATTG
TTCAAGTTGACGTTGCAAGAAGACGATACATGTATGTGATCGTGATGGTT
GCCCCCCCACTGGTGACGCTTCGCAATCCTTTGCAGACAAAGCGACAGGC
GCTCTTGGACAAGCCTCGGGAAATCACGGTAGATGACGCGCTGATCGCTC
CGACTTCGGTGGCTCGGCAGCATACCCACAAGACAGCAGAAGTGAGTACA
CTATATTTTTCTATGTGCTACCATCAACTACTTTGATCTGATTTCGCTCA
TCCAATCAGCGCTCTAGTTCCATACATCTGCTCCCCGCTTTGTTTTCCCC
CTCTCTCCATGCCCCCCCACCTGACACTTGTTTCCGATTTTTGTATTTTA
ACCCAAAAGGAACACGACGGCGACGGTGGCGGCCACGGCGAGCATTCCAA
GAAGACAACGAAGGCTGCCTTACCAACAGCCGACATCGCCGAGGTTTCTG
ATCGTGGCGGGCGCGTGAGCGATGCCCGCGGCGGGCCGGTCTGGAAGACC
CGTAAGGAATTCGACAAAGCTGCCGCTGCTGCTGCTTTCTCAGGGAAAAG
GGGTGGCGGTCGTGGCGGCGGGCGCGGAAGCGGTGGCAAGCAAGGCGAGA
AAAAAGGAGGCGGCGGCGGTGGAAGAGGTGCGGGCGAGGAGCAAGGGAAA
AAGGAGCGTGGGAACCGTCGTGGCGGTGGCGGT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:187848..188780-

>mRNA_Ecto-sp6_S_contig9.18005.1 ID=mRNA_Ecto-sp6_S_contig9.18005.1|Name=mRNA_Ecto-sp6_S_contig9.18005.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:187848..188780- (Ectocarpus species6 EcLAC_371)
ATGTATGTGATCGTGATGGTTGCCCCCCCACTGGTGACGCTTCGCAATCC
TTTGCAGACAAAGCGACAGGCGCTCTTGGACAAGCCTCGGGAAATCACGG
TAGATGACGCGCTGATCGCTCCGACTTCGGTGGCTCGGCAGCATACCCAC
AAGACAGCAGAAGAACACGACGGCGACGGTGGCGGCCACGGCGAGCATTC
CAAGAAGACAACGAAGGCTGCCTTACCAACAGCCGACATCGCCGAGGTTT
CTGATCGTGGCGGGCGCGTGAGCGATGCCCGCGGCGGGCCGGTCTGGAAG
ACCCGTAAGGAATTCGACAAAGCTGCCGCTGCTGCTGCTTTCTCAGGGAA
AAGGGGTGGCGGTCGTGGCGGCGGGCGCGGAAGCGGTGGCAAGCAAGGCG
AGAAAAAAGGAGGCGGCGGCGGTGGAAGAGGTGCGGGCGAGGAGCAAGGG
AAAAAGGAGCGTGGGAACCGTCGTGGCGGTGGCGGT
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