mRNA_Ecto-sp6_S_contig9.18003.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18003.1
Unique NamemRNA_Ecto-sp6_S_contig9.18003.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18003.1 vs. uniprot
Match: D7G7I1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I1_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 1.380e-58
Identity = 110/136 (80.88%), Postives = 122/136 (89.71%), Query Frame = 3 
Query:  153 VSTAAARSGG---GASSAVNQRAVDFRRQLDEHTRTLVESFGGLLRSAKITNPQSTTREEFQVNVATASLASTGEGLLRQIKEVKLAVMLQDEAAMDREVDQGLSKIAAERAELEKELEALSHDLKAAYARAATTG 551
            +STAA+R+GG   GA+ AVNQRAVDFRRQLD HTRTLVESFGGL+R AKITNPQST REEFQVNVATASLA+ GEGLLRQI+E+KLAVMLQDEAAMD EVDQ L+KIA+ER ELEKELEALS+DLK AYA+AA  G
Sbjct:    1 MSTAASRAGGSSSGATPAVNQRAVDFRRQLDAHTRTLVESFGGLVRLAKITNPQSTEREEFQVNVATASLATAGEGLLRQIRELKLAVMLQDEAAMDLEVDQALAKIASEREELEKELEALSNDLKGAYAKAAMAG 136
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BLAST of mRNA_Ecto-sp6_S_contig9.18003.1 vs. uniprot
Match: A0A6H5JD54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD54_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 2.460e-45
Identity = 88/108 (81.48%), Postives = 97/108 (89.81%), Query Frame = 3 
Query:  228 QLDEHTRTLVESFGGLLRSAKITNPQSTTREEFQVNVATASLASTGEGLLRQIKEVKLAVMLQDEAAMDREVDQGLSKIAAERAELEKELEALSHDLKAAYARAATTG 551
            +LD HTRTLVESFGGL+R AKITNPQST REEFQVNVATASLA+ GEGLLRQI+E+KLAVMLQDEAAMD EVDQ L+KIA ER ELEKELEALS++LK AYA+AA  G
Sbjct:   83 RLDAHTRTLVESFGGLVRLAKITNPQSTEREEFQVNVATASLATAGEGLLRQIRELKLAVMLQDEAAMDLEVDQALAKIATERKELEKELEALSNELKGAYAKAAMAG 190
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BLAST of mRNA_Ecto-sp6_S_contig9.18003.1 vs. uniprot
Match: A0A7S2UVX4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVX4_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.300e-8
Identity = 34/106 (32.08%), Postives = 59/106 (55.66%), Query Frame = 3 
Query:  213 VDFRRQLDEHTRTLVESFGGLLRSAKITNPQSTTREEFQVNVATASLASTGEGLLRQIKEVKLAVMLQDEAAMDREVDQGLSKIAAERAELEKELEALSHDLKAAY 530
            ++F RQLD +   LVE++GG+++SAK+ +      +  Q+   T S+    E L+ Q++E+KLA+ LQD  A++ +     + +       +  +E L   LKAAY
Sbjct:    6 LNFHRQLDANIARLVEAYGGMIQSAKVGDKTRLHLDALQLTSHTISIEQAAESLIGQVRELKLALALQDAEALEADAQHARATLEERYNGSKNHVEELREQLKAAY 111
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G7I1_ECTSI1.380e-5880.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD54_9PHAE2.460e-4581.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2UVX4_9STRA4.300e-832.08Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:176426..180236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size590
Hectar predicted targeting categoryother localisation
Exons4
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350517.014511-CDS-Ecto-sp6_S_contig9:176425..1765991682350517.014511-CDS-Ecto-sp6_S_contig9:176425..176599Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 176426..176599 -
1682350517.0251906-CDS-Ecto-sp6_S_contig9:177206..1772151682350517.0251906-CDS-Ecto-sp6_S_contig9:177206..177215Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 177207..177215 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350517.0351238-UTR-Ecto-sp6_S_contig9:177215..1772931682350517.0351238-UTR-Ecto-sp6_S_contig9:177215..177293Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 177216..177293 -
1682350517.0448387-UTR-Ecto-sp6_S_contig9:178370..1784691682350517.0448387-UTR-Ecto-sp6_S_contig9:178370..178469Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 178371..178469 -
1682350517.0545285-UTR-Ecto-sp6_S_contig9:180006..1802361682350517.0545285-UTR-Ecto-sp6_S_contig9:180006..180236Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 180007..180236 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18003.1prot_Ecto-sp6_S_contig9.18003.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 176426..177215 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18003.1

>prot_Ecto-sp6_S_contig9.18003.1 ID=prot_Ecto-sp6_S_contig9.18003.1|Name=mRNA_Ecto-sp6_S_contig9.18003.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=61bp
MLQDEAAMDREVDQGLSKIAAERAELEKELEALSHDLKAAYARAATTGRE
TTATETAEAAE
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mRNA from alignment at Ecto-sp6_S_contig9:176426..180236-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18003.1 ID=mRNA_Ecto-sp6_S_contig9.18003.1|Name=mRNA_Ecto-sp6_S_contig9.18003.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3811bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:176426..180236- (Ectocarpus species6 EcLAC_371)
CCGACGCAAGTCGCACGCACGCAGGGACAGGGACAAGGGTGTAAGACCAG
TAGACGTTCTGGTTTTTGATTCTCTGCTTCCTTCCCCAGGCTCTTGACAG
AGGGGAGCGCTACCTTTGCTTGGCGGCCCGCTCTCTTTTGGGAGCTAACG
GCGTGTCTACAGCAGCAGCGAGATCGGGGGGCGGCGCGTCGTCTGCTGTG
AACCAGCGTGCGGTAGACTTCCGCCGACAGGTGAGGCCTAGTGTTCCGTG
ACGTGCTGTGCTGTTGTGGAGTTCCTCACACACGGGAGCCAACGTTTGTC
GCTCTGCCTGCTGTCGGGTGTAGGGGGAAGTCGGCTGCTTGTGTACAGAA
TCTCCGCAACTGTCCGCGTGACCACGAGCGGTGGGCGCTCCCCCAACAGC
GGGAGCATAGGCCAGCCCCCCTCCCCATTCCTTCGCAGATATCGGCCGAT
GCGCACACTGAGAGTTGCTCTGTGTGGATCCCTCACTACAGCATCACTCT
TCGCGCGCACATGGTGTATTTTGTCCCACGCGTTTGAAAAAAACAAAAAA
ACAGATGGTGGTGGCACAAGGTGGCATGGACTACCGCTGTTGTACATTCC
CACTCCCCACACGTGGCTCAACCTACAGCTATCATGTAGTTGCTTCCCTC
GACATATCGTATCATTTCGTACAGTGCTGGCACGCAAGTCTACAACAACT
CCGAAACTTGGTGTGTTTGTTCACCCCGGGGCAAGGTTGTGTTTTTTTTT
TCCCCTGTGAGTCAGCGGTCGCCTTCTGTGCGCATGATACCGCTACAGCA
GTATACAGCAGTGCACGTTTTCGATCCAAGGCTCCTTCGATGCTGCAGGC
GGCGCATTCCCACTCACCCATACGTTTTACACACTCCTCGAGAGGAGGGA
CCTGTAATGAGGGCACCGCAGCAAACGTAGAACCCCGGCGGGGGTCGGGG
TGGGCGTTGAATGGTTCAGTCTTGATGCCGTGAATCGTCTCTACAAGTAG
TTCTCTGCGAGGGGAGGCGCCCAGCGACAACAAACGCTTGTGGGGTGTAC
ATTAGTCAAAATCGTGGAATCAACGTCAAGAACCTCCCCACAAAAGAGAC
GGGACTCTGCTGCGGTGGATTAGCAGTTCTATCAGTTGATGTAAGATGCG
GCCGCCCGAGTACAAAAACACCTGACACGTTTCATGACAACAGAAACCTC
CGTTGCACAGCTCTGCCAGGTCAAACAGCAAATGTAGACCCTGTTCGACC
TGAGGTGATTTTCTTCGCATCAACCTGTCTGTCGGACCTAAAAGACCGAA
GCACTCACACAGTCGAGCGCGCGAACTATGAGAGAATGTCCCTTGCACCT
ACCGGAGGTTGAATCCAAGGTCGTAAATGATCTTCTGCGCGAACTATAGG
GGAACATGTACCCTTATCGCGTGCTGTCGCTTGAAAACGAGGTCGTGGTG
ATATATCTATGGCACACGTACAATGCCGCTAGAGTCTGACAGGCGGGGTA
AGCTGGTGTTGTTGTATGTTGTACACTTGCTTCAAAATCATGTGGCGGAG
AATTGAACGGCAGCTCGTCGAATTCTACTGTCAGCTCTGTGAGCGCACCG
CACTCGTCCTGCTGCAGGAAGGCATGTGCTAGGCACAGATATCGGGCTCT
ACGATACTGCTGAGTACTGCGTTCGGCGTTCGTGAAACTCCGATTCTGCT
TAATGCTGCGTATTTCGTTCGTTTGTTGCCCCGACACGAATGCTCTTTTT
TTTATTTTTTCACCCAGCTGGACGAGCACACGCGGACGCTCGTCGAGAGC
TTCGGCGGGCTGCTGCGATCAGCCAAGATCACCAACCCGCAGAGCACAAC
GCGCGAGGAGTTTCAGGTAAGGACGGAGAGGCTATGCTATGAATAGACAG
ACAGCTTTTGTCTCTCCTGTTACACCTTCAAATTTTGAATCTCGTTGCTT
TGATGGTCTACCGTACGGCAGTCAGACGGATGTATCGGATAATGGACCCA
TGGTCACGGGTGTAAGGTTAATCGCAGAGTGACAGCGAAGCCCAAATCTC
AAGGGGCCCCGCATGTTACCCAACACACAGCATAGATACCCCCGTTAGAT
ATCCATCCCACGGAATGTTCTCCGTAGATGCTTTCTACAACAACCTTCTC
CTTGGTGACTGTACCATTGGCCAAAGTCCATAAGCCTTCGCGATTTCCTA
CGACCATCGTTGTGACTACATGTTCCACACCAGACGAAGGCACCGCAGTT
GCACGACTCTGGCTGACAGGCGCAATGACGAGGCTTTGATTTCGCTACAC
AAATCCAACCAACACGCAGCATGAGTACGAGAAAACATGCCCCCTTTCTT
GTAAGCGACAAGCGACCGGCTTGCGAAAAGCCACCCCCTCTCTGAAACAA
GCGACTGTTTTTTTCTCGGCCGGCTGCCCACGGTATCTCAGGCCCTATTT
TGTGGCTTCTCAGGGTTTTAAATTCGACTTCCGGGTGTACCTCGTGTCTC
GTGTTTCTAGTAGTGACTATGTCTCACCTGCGTGGTAGTAGAGGTGTGAC
CCGTCCTGCGCCGGCCCGGGTACCCGCTCGCGGATACACGGACCGGGACG
GACCGGAACCGGACCAGGACAGTTTTTGTGGCCCGCGCCGGGTATCTGTT
CGCAGCACGGATCCCCCCGGACACGACACGGAGCCCCCTACCTACGTCGA
AAAAACCTTGTGTGCCTCCAAAATATGTGCCAGAGTCCGGGTACCCGGTC
CAGATTCGGGTACCGGTCCAGATTCTGAGTGTCCCCAAAAAAAAACGGGG
CTGGTACCCGGTCCAGATTTCTGAGGCCGGGTCACACCTCTACGTGGTAG
GCGGCGCCCTCCAGTCCCCCCTCAGTCGTCCCCCCACCCCACCCCTCACG
CGAATGTCCCTCCCTTCCTTCGGGGAACAACGGCGGCATCCAGGTGAATG
TGGCGACAGCTAGCCTAGCTTCGACGGGGGAGGGACTGCTTCGGCAGATC
AAGGAGGTGAAGCTTGCCGTCATGCTACAGGTAACGTCGACACCACGCCC
ACGCCGCTGCTTTTTTTTTTCTTTTGCTGCGTGCTGTTTTCTCTGTCAGT
ATTGGGTTAGGCGGGAATAGTTAACTTTCCTGTCTTTGATGGAAGAAGGC
CTGGTCTGTCATCTGGTTCTGTGTACTCTGCTGCTGAAACGGACGTACCA
GATTCTCTTTAGTTGGGATTTGTCGGATGTTCAGGTATTGTTGAAGGCCA
CAAAAGTAAAAGTGTCGTGTGCACCGAGTTTCCCGGGCACCGTTCCTGAG
CACGGCGCCTGGTAAAGTGCCCAACTCTGTGGCTTTGTCTCGGCCCTTGT
GCACAACGGATTTGTGAAACCGGGAGATATTTCGCCATTCTGTAGGATCA
CCAAAGCTGGAGACATCGCTGTGTGGTTCCCTCCGACAAGGGCGTTCGGA
AGTATTTTGGCGACGAGCCTTTTCTCTGCAACGCAATAGCCAATCAGATG
CGCTGAGGCCAAAAGGACAGAGTCACTTCCCACCTTCCAGATCGCCACCC
ATCCTTCCCTCTCGCGCGCTCCGTCCTTTCAACACACCCTCTCCCGGCAC
CCCACCCTGCCACTCGAACAAAACTCCCGGCATCTAGGACGAGGCAGCGA
TGGACCGAGAGGTGGACCAGGGGCTGTCGAAGATAGCGGCCGAGCGGGCG
GAGCTGGAGAAGGAGCTGGAGGCGCTCTCGCACGACCTCAAGGCGGCGTA
CGCCAGGGCCGCCACGACGGGACGAGAAACGACAGCGACAGAAACGGCAG
AGGCGGCAGAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:176426..180236-

>mRNA_Ecto-sp6_S_contig9.18003.1 ID=mRNA_Ecto-sp6_S_contig9.18003.1|Name=mRNA_Ecto-sp6_S_contig9.18003.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:176426..180236- (Ectocarpus species6 EcLAC_371)
ATGCTACAGGACGAGGCAGCGATGGACCGAGAGGTGGACCAGGGGCTGTC
GAAGATAGCGGCCGAGCGGGCGGAGCTGGAGAAGGAGCTGGAGGCGCTCT
CGCACGACCTCAAGGCGGCGTACGCCAGGGCCGCCACGACGGGACGAGAA
ACGACAGCGACAGAAACGGCAGAGGCGGCAGAG
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