mRNA_Ecto-sp6_S_contig9.18002.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18002.1
Unique NamemRNA_Ecto-sp6_S_contig9.18002.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18002.1 vs. uniprot
Match: A0A6H5JGM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM7_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.810e-23
Identity = 41/61 (67.21%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 VGSGWRHDRDLQQNPLRVGECICSRTDCVLGLYKKYVWRRQREEKGPLHKMEVGQRSPMGR 183
            VG GW H+RDL  +PL+ GECIC R DCV+ LY++Y  RRQREEKG LH M +GQRSPMGR
Sbjct:   62 VGEGWTHERDLVGDPLKAGECICRRADCVVNLYQRYKGRRQREEKGALHTMVIGQRSPMGR 122
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BLAST of mRNA_Ecto-sp6_S_contig9.18002.1 vs. uniprot
Match: A0A6H5KE39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE39_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 9.440e-8
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 VGSGWRHDRDLQQNPLRVGECICSRTDCVLGLYKK 105
            VG  W H+RDLQ +PL+VGECIC+R DC  G+ +K
Sbjct:   61 VGQEWPHERDLQGDPLKVGECICTRPDCAGGIVQK 95
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JGM7_9PHAE1.810e-2367.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE39_9PHAE9.440e-860.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:160122..161418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size251
Hectar predicted targeting categoryother localisation
Exons2
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350516.9742212-CDS-Ecto-sp6_S_contig9:160121..1601671682350516.9742212-CDS-Ecto-sp6_S_contig9:160121..160167Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 160122..160167 -
1682350516.9845252-CDS-Ecto-sp6_S_contig9:161215..1614181682350516.9845252-CDS-Ecto-sp6_S_contig9:161215..161418Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 161216..161418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18002.1prot_Ecto-sp6_S_contig9.18002.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 160122..161418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18002.1

>prot_Ecto-sp6_S_contig9.18002.1 ID=prot_Ecto-sp6_S_contig9.18002.1|Name=mRNA_Ecto-sp6_S_contig9.18002.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=83bp
VGSGWRHDRDLQQNPLRVGECICSRTDCVLGLYKKYVWRRQREEKGPLHK
MEVGQRSPMGRYPRRALRSASVQPSTESEVLA*
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mRNA from alignment at Ecto-sp6_S_contig9:160122..161418-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18002.1 ID=mRNA_Ecto-sp6_S_contig9.18002.1|Name=mRNA_Ecto-sp6_S_contig9.18002.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1297bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:160122..161418- (Ectocarpus species6 EcLAC_371)
GTTGGGTCAGGCTGGCGTCATGATCGCGATCTTCAACAGAACCCTCTCCG
GGTGGGTGAGTGCATCTGTTCCCGCACGGACTGCGTACTTGGTTTGTACA
AGAAGTACGTGTGGAGGCGCCAGAGGGAAGAAAAAGGACCTTTGCACAAA
ATGGAGGTCGGACAGCGGTCGCCGATGGGCCGGTACCCTCGACGGGCTCT
CAGGTATGATGCCTCAGATACACCACCTCTGTCTACAGCAGTGTACGGTA
AGGACACGGGGGTGTCAGCATTTATCGTAGCGTGATTTCTCCACGACCAG
GAGGGTACCACTGCCGACAAGGTTAGTTTTGAAAAAATCACGTCAGGGCT
TGCCTGAGAGGTAGGTAGGTGTTCGCAACCTCGTCGCCGTGCTAACACCG
CCGTGCATTCTCTCGCATCCTTAAGGTAGGTCGTCTCCGAATTATAGACC
GCGCAAAGACACCACACGTAGAAACAACCCTATTTCTAGTTTGGTGTGTG
CGTTCTGCCTCTCCTTTTTCCGAGATCTCGACCGTCGCCATGTGCGGTTT
GTTAATGGCATGGTACCGGGCGGTGCCCGACCCATCTCTAATCACATGTC
TCCCTCGCCCTGCTCCTTACTGAGTGACAGTTGTTCGGTTAGCCTTAGTT
GCTGTTTCTCACGTTAGCTCAATGGTAAGTACGAGGAATGTACCGTTCTG
CGTCGTTCTCTTTGAGGTTCTCTCCGTGTTGTGAGAAGAGCCTCAACCGC
TCCCCCGAAGACATCGGAAGAAGAATATGTACTGCTGTAGAGCACCGCTC
ATTTTTTTTTTCCGCTGCCCGCACACTTCCTCTGCCCAAAAACTACCTAC
CATCCGAAGACATGGGGAGAAGTATATGTACTGCTGTAGAGCGCCGCTCA
TTTTTTTTTTCCGCTGCCCGCACACTCCCTCTGCCAGATTGCACCTACCA
CCCGAAGACATCGGAAGAAGTATATGTACTGCTGTAGAGCGCCGCTCATT
TTTTTTTCCGCTGCCCGCACACCCTCTGCCAGATAGCACCTACCATCTAC
AGTAGTAAGAATAACAGATGAAGTTACCACCACGTTGCATTCGCGATTTT
CAGGTGCGAGCCCTTCTGGAACATGTGGAACTGGAAGGCAGGGTACTCGA
TTGCTGTGGTGCCGCCCAAGACGCAGTCTCCACCGTCCTGAGTTCACACG
GTCTCCGTGTTGCAACAAACGACATGAACCCGACGTATGTGTGTGTCTCA
GGTCGGCTTCGGTGCAACCAAGCACTGAATCCGAGGTGTTAGCGTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:160122..161418-

>mRNA_Ecto-sp6_S_contig9.18002.1 ID=mRNA_Ecto-sp6_S_contig9.18002.1|Name=mRNA_Ecto-sp6_S_contig9.18002.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:160122..161418- (Ectocarpus species6 EcLAC_371)
GTTGGGTCAGGCTGGCGTCATGATCGCGATCTTCAACAGAACCCTCTCCG
GGTGGGTGAGTGCATCTGTTCCCGCACGGACTGCGTACTTGGTTTGTACA
AGAAGTACGTGTGGAGGCGCCAGAGGGAAGAAAAAGGACCTTTGCACAAA
ATGGAGGTCGGACAGCGGTCGCCGATGGGCCGGTACCCTCGACGGGCTCT
CAGGTCGGCTTCGGTGCAACCAAGCACTGAATCCGAGGTGTTAGCGTAA
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