mRNA_Ecto-sp6_S_contig9.18001.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18001.1
Unique NamemRNA_Ecto-sp6_S_contig9.18001.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18001.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.120e-27
Identity = 54/98 (55.10%), Postives = 70/98 (71.43%), Query Frame = 3 
Query:  207 RVRALLEHVELEGRVLDCCGAAQDAVSTVLSSHGLRVATNDMNPTLVADTHLDAATDAFVKAYVEERVRPDWVVTSPPYKHAFAIFKQAMRVGRMGVA 500
            +V ALL +V+L G VLD CG+A DA+  VL +H L V+TND NP L ADTHLDA ++ F   +  E  RPDW+VTSPPY +AF+I  +A+ V R+GVA
Sbjct:   14 KVDALLLNVKLAGGVLDACGSASDAIKVVLEAHSLNVSTNDFNPRLTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVA 111
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BLAST of mRNA_Ecto-sp6_S_contig9.18001.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.250e-12
Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 3 
Query:  198 NPLRVRALLEHVELEGRVLDCCGAAQDAVSTVLSSHGLRVATNDMNPTLVA-----DTHLDAATDAFVKAYVEERV--RPDWVVTSPPYKHAFAIFKQAMRVGRMGVA 500
            +P  V ALL  VELEG VLD CG   DA++T L +   +V TND++  L       DT+LDA+  +F   ++  +   RPDWV+TSPPYK A    K A+ +   GVA
Sbjct:   86 SPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGAT-CKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVA 192
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BLAST of mRNA_Ecto-sp6_S_contig9.18001.1 vs. uniprot
Match: A0A6H5JGM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM7_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 5.830e-10
Identity = 33/42 (78.57%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 MVRGFRASCGKGVHGKEAAAEGELRRCFAYDRLGSRDG*SGN 126
            MVR  RASCGK VHGKE AA GELRRCFA DR GSRDG S N
Sbjct:    1 MVRQRRASCGKVVHGKEPAAAGELRRCFACDRPGSRDGCSTN 42
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BLAST of mRNA_Ecto-sp6_S_contig9.18001.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.750e-8
Identity = 42/105 (40.00%), Postives = 57/105 (54.29%), Query Frame = 3 
Query:  210 VRALLEHVELEGRVLDCCGAAQDAVSTVLSSHGLRVATNDMNPTLVAD------THLDAATDAFVKAYVEE--RVRPDWVVTSPPYKHAFAIFKQAMRVGRMGVA 500
            V ALL+ V + GRVLD CG   DAV+  L      V TND++  L +D      T LDA+   F   ++ +  + +P+ VV SPPYK A    K A+ V + GVA
Sbjct:  126 VEALLDAVNVSGRVLDMCGGPDDAVARKLRDT-CEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVA 229
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BLAST of mRNA_Ecto-sp6_S_contig9.18001.1 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 2.630e-5
Identity = 35/103 (33.98%), Postives = 48/103 (46.60%), Query Frame = 3 
Query:  198 NPLRVRALLEHVELEGRVLDCCGAAQDAVSTVLSSHGLRVATNDMNPTLVADTHLDAATDAFVKAYVEERV--RPDWVVTSPPYKHAFAIFKQAMRVGRMGVA 500
            +P  V AL   V + G VLD CG  +DAV+                      T+LDA+   F   ++++    +PDWVVTSPPYK +      A+ V   GVA
Sbjct:   51 SPAAVDALRAAVAITGCVLDMCGGPEDAVAQGFGG---------------TCTNLDASLVYFPDEFIKDNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVA 138
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BLAST of mRNA_Ecto-sp6_S_contig9.18001.1 vs. uniprot
Match: UPI001E5A9AD5 (hypothetical protein n=1 Tax=Nostoc favosum TaxID=2907819 RepID=UPI001E5A9AD5)

HSP 1 Score: 51.6 bits (122), Expect = 8.470e-5
Identity = 39/113 (34.51%), Postives = 57/113 (50.44%), Query Frame = 3 
Query:  174 RHDRDLQQNPLRVRA-LLEHVELEGRVLDCCGAAQDAVSTVLSS--HGLRVATNDMNPTLVADTHLDAATDAFVKAYVEERVRPDWVVTSPPYKH-AFAIFKQAMRVGRMGVA 500
            RH  +  ++P      LL HV L G + + C     A++++L +  H  ++ TND++P L AD HLDA       +  E     DW+ T+PPY   A  I K A    R+GVA
Sbjct:   23 RHPLNFYESPSWFTTELLRHVPLSGVIGEPC-VGMGAIASLLQAWPHTKQMWTNDIDPHLAADYHLDATLSESWNSLPE----CDWICTNPPYSDFAAPIIKNAFAKARVGVA 130
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K3H5_9PHAE1.120e-2755.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJU4_ECTSI1.250e-1243.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGM7_9PHAE5.830e-1078.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHQ4_9PHAE1.750e-840.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1N5_9PHAE2.630e-533.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001E5A9AD58.470e-534.51hypothetical protein n=1 Tax=Nostoc favosum TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:159799..161576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size502
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350516.9159403-CDS-Ecto-sp6_S_contig9:159798..1599581682350516.9159403-CDS-Ecto-sp6_S_contig9:159798..159958Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 159799..159958 -
1682350516.9269133-CDS-Ecto-sp6_S_contig9:160184..1601951682350516.9269133-CDS-Ecto-sp6_S_contig9:160184..160195Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 160185..160195 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350516.9362314-UTR-Ecto-sp6_S_contig9:160195..1603151682350516.9362314-UTR-Ecto-sp6_S_contig9:160195..160315Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 160196..160315 -
1682350516.9470923-UTR-Ecto-sp6_S_contig9:161367..1615761682350516.9470923-UTR-Ecto-sp6_S_contig9:161367..161576Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 161368..161576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18001.1prot_Ecto-sp6_S_contig9.18001.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 159799..160195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18001.1

>prot_Ecto-sp6_S_contig9.18001.1 ID=prot_Ecto-sp6_S_contig9.18001.1|Name=mRNA_Ecto-sp6_S_contig9.18001.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=57bp
MNPTLVADTHLDAATDAFVKAYVEERVRPDWVVTSPPYKHAFAIFKQAMR
VGRMGVA
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mRNA from alignment at Ecto-sp6_S_contig9:159799..161576-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18001.1 ID=mRNA_Ecto-sp6_S_contig9.18001.1|Name=mRNA_Ecto-sp6_S_contig9.18001.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1778bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:159799..161576- (Ectocarpus species6 EcLAC_371)
ATGGTCCGTGGTTTCCGCGCCTCGTGCGGCAAAGGCGTGCACGGCAAAGA
AGCAGCAGCAGAAGGGGAGCTTCGGCGGTGCTTCGCGTATGACCGTCTGG
GTAGCCGCGACGGGTGAAGTGGAAACATGGGCGCTGCTGGGTGAAGTGGT
CTGCGAGTGTTGGGTCAGGCTGGCGTCATGATCGCGATCTTCAACAGAAC
CCTCTCCGGGTGGGTGAGTGCATCTGTTCCCGCACGGACTGCGTACTTGG
TTTGTACAAGAAGTACGTGTGGAGGCGCCAGAGGGAAGAAAAAGGACCTT
TGCACAAAATGGAGGTCGGACAGCGGTCGCCGATGGGCCGGTACCCTCGA
CGGGCTCTCAGGTATGATGCCTCAGATACACCACCTCTGTCTACAGCAGT
GTACGGTAAGGACACGGGGGTGTCAGCATTTATCGTAGCGTGATTTCTCC
ACGACCAGGAGGGTACCACTGCCGACAAGGTTAGTTTTGAAAAAATCACG
TCAGGGCTTGCCTGAGAGGTAGGTAGGTGTTCGCAACCTCGTCGCCGTGC
TAACACCGCCGTGCATTCTCTCGCATCCTTAAGGTAGGTCGTCTCCGAAT
TATAGACCGCGCAAAGACACCACACGTAGAAACAACCCTATTTCTAGTTT
GGTGTGTGCGTTCTGCCTCTCCTTTTTCCGAGATCTCGACCGTCGCCATG
TGCGGTTTGTTAATGGCATGGTACCGGGCGGTGCCCGACCCATCTCTAAT
CACATGTCTCCCTCGCCCTGCTCCTTACTGAGTGACAGTTGTTCGGTTAG
CCTTAGTTGCTGTTTCTCACGTTAGCTCAATGGTAAGTACGAGGAATGTA
CCGTTCTGCGTCGTTCTCTTTGAGGTTCTCTCCGTGTTGTGAGAAGAGCC
TCAACCGCTCCCCCGAAGACATCGGAAGAAGAATATGTACTGCTGTAGAG
CACCGCTCATTTTTTTTTTCCGCTGCCCGCACACTTCCTCTGCCCAAAAA
CTACCTACCATCCGAAGACATGGGGAGAAGTATATGTACTGCTGTAGAGC
GCCGCTCATTTTTTTTTTCCGCTGCCCGCACACTCCCTCTGCCAGATTGC
ACCTACCACCCGAAGACATCGGAAGAAGTATATGTACTGCTGTAGAGCGC
CGCTCATTTTTTTTTCCGCTGCCCGCACACCCTCTGCCAGATAGCACCTA
CCATCTACAGTAGTAAGAATAACAGATGAAGTTACCACCACGTTGCATTC
GCGATTTTCAGGTGCGAGCCCTTCTGGAACATGTGGAACTGGAAGGCAGG
GTACTCGATTGCTGTGGTGCCGCCCAAGACGCAGTCTCCACCGTCCTGAG
TTCACACGGTCTCCGTGTTGCAACAAACGACATGAACCCGACGTATGTGT
GTGTCTCAGGTCGGCTTCGGTGCAACCAAGCACTGAATCCGAGGTGTTAG
CGTAAAGTCGGTAGGCTGTGCTCAAAGACACATACGGCAGTGCTGAAAAG
TCCCCATCCATGAAACTGGCCACTATTCAAAAGTGGCAAATGTTCAGTGT
TCACGTCCAATTTTTAACTTAACCCGTTGGCGGCGCTTTTTTTTTATTTT
GTACCTCCCTACCCTCAGATTGGTCGCAGATACGCACCTGGACGCCGCCA
CAGACGCGTTTGTCAAGGCGTACGTCGAGGAAAGGGTGCGTCCAGACTGG
GTCGTGACGAGCCCACCCTACAAGCACGCCTTCGCCATTTTTAAGCAGGC
GATGCGGGTCGGGCGTATGGGAGTAGCC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:159799..161576-

>mRNA_Ecto-sp6_S_contig9.18001.1 ID=mRNA_Ecto-sp6_S_contig9.18001.1|Name=mRNA_Ecto-sp6_S_contig9.18001.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:159799..161576- (Ectocarpus species6 EcLAC_371)
ATGAACCCGACATTGGTCGCAGATACGCACCTGGACGCCGCCACAGACGC
GTTTGTCAAGGCGTACGTCGAGGAAAGGGTGCGTCCAGACTGGGTCGTGA
CGAGCCCACCCTACAAGCACGCCTTCGCCATTTTTAAGCAGGCGATGCGG
GTCGGGCGTATGGGAGTAGCC
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