mRNA_Ecto-sp6_S_contig9.17996.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.17996.1
Unique NamemRNA_Ecto-sp6_S_contig9.17996.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.17996.1 vs. uniprot
Match: D7G8I5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8I5_ECTSI)

HSP 1 Score: 557 bits (1435), Expect = 6.850e-197
Identity = 298/312 (95.51%), Postives = 298/312 (95.51%), Query Frame = 1 
Query:   52 MDVALEDVNFLLSDLDLGVVGHQDGEDNLKKSSVVVTEQVRALEAALARQQDGRPEEADDTGGGAGIVNVAIARGMPRPDGNTDDSTSRAEALNFMRSELQLLCIEAHRRRKESKPLLDGLELTAAQKQTVDRVHAAIAADFALRRLMLLRRCDVTVRSFLRDSISGGSGVGERTHGGESAGGKGGQXXXXGAADRSGGGDEEKFADLPPTLRTKRQALLDKPREITVDDALIAPTSVARQHTHKTAEEYDGDGGGHGEHSKKTTKAALPTADIAEVSDRGGRVSDARGGPVWKTRKEFDKAAAAAAFSGKR 987
            MDVALEDVNFLLSDLDLGVVGHQDGEDNLKKSSVVVTEQVRALEAALARQQDGRPEEADDTGGGAGIVNVAIARGMPRPDGNTDDSTSRAEALNFMRSELQLLCIEAHRRRKESKPLLDGLELTAAQKQTVDRVHAAIAADFALRRLMLLRRCDVTVRSFLRDSISGGSGVGER HGGESAGGKGGQXXXX         DEEKFADLPP LRTKRQALLDKPREITVDDALIAPTSVARQHTHKTAEEYDGDGGGHGEHS KT KA LPTADIAEVSDRGGRVSDARGGPVWKTRKEFDKAAAAAAFSGKR
Sbjct:    1 MDVALEDVNFLLSDLDLGVVGHQDGEDNLKKSSVVVTEQVRALEAALARQQDGRPEEADDTGGGAGIVNVAIARGMPRPDGNTDDSTSRAEALNFMRSELQLLCIEAHRRRKESKPLLDGLELTAAQKQTVDRVHAAIAADFALRRLMLLRRCDVTVRSFLRDSISGGSGVGERKHGGESAGGKGGQXXXXXXXXXXXXXDEEKFADLPPALRTKRQALLDKPREITVDDALIAPTSVARQHTHKTAEEYDGDGGGHGEHSTKTKKAVLPTADIAEVSDRGGRVSDARGGPVWKTRKEFDKAAAAAAFSGKR 312
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.17996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8I5_ECTSI6.850e-19795.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:121664..124236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1124
Hectar predicted targeting categoryother localisation
Exons5
Cds size1122
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350516.534676-CDS-Ecto-sp6_S_contig9:121664..1219911682350516.534676-CDS-Ecto-sp6_S_contig9:121664..121991Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 121665..121991 -
1682350516.5472653-CDS-Ecto-sp6_S_contig9:122172..1222771682350516.5472653-CDS-Ecto-sp6_S_contig9:122172..122277Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 122173..122277 -
1682350516.5563455-CDS-Ecto-sp6_S_contig9:122570..1228701682350516.5563455-CDS-Ecto-sp6_S_contig9:122570..122870Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 122571..122870 -
1682350516.5639296-CDS-Ecto-sp6_S_contig9:123208..1232811682350516.5639296-CDS-Ecto-sp6_S_contig9:123208..123281Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 123209..123281 -
1682350516.5720878-CDS-Ecto-sp6_S_contig9:123919..1242361682350516.5720878-CDS-Ecto-sp6_S_contig9:123919..124236Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 123920..124236 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.17996.1prot_Ecto-sp6_S_contig9.17996.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 121665..124236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.17996.1

>prot_Ecto-sp6_S_contig9.17996.1 ID=prot_Ecto-sp6_S_contig9.17996.1|Name=mRNA_Ecto-sp6_S_contig9.17996.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=374bp
LEHTAGRSRPPPRLSRAMDVALEDVNFLLSDLDLGVVGHQDGEDNLKKSS
VVVTEQVRALEAALARQQDGRPEEADDTGGGAGIVNVAIARGMPRPDGNT
DDSTSRAEALNFMRSELQLLCIEAHRRRKESKPLLDGLELTAAQKQTVDR
VHAAIAADFALRRLMLLRRCDVTVRSFLRDSISGGSGVGERTHGGESAGG
KGGQGEAGGAADRSGGGDEEKFADLPPTLRTKRQALLDKPREITVDDALI
APTSVARQHTHKTAEEYDGDGGGHGEHSKKTTKAALPTADIAEVSDRGGR
VSDARGGPVWKTRKEFDKAAAAAAFSGKRGGGRGGGRGSGGKRGEKKGGG
GGGRGAGEEQGKKERGNRRGGGGG
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mRNA from alignment at Ecto-sp6_S_contig9:121664..124236-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.17996.1 ID=mRNA_Ecto-sp6_S_contig9.17996.1|Name=mRNA_Ecto-sp6_S_contig9.17996.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2573bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:121664..124236- (Ectocarpus species6 EcLAC_371)
CTCGAACACACAGCAGGCAGGTCTCGTCCACCCCCGCGTCTCTCGCGTGC
AATGGACGTCGCATTGGAAGATGTTAATTTTCTCCTGTCCGACCTTGATC
TTGGCGTGGTCGGGCATCAGGATGGCGAGGACAACTTAAAAAAATCCTCC
GTCGTGGTAACAGAGCAAGTACGGGCTCTCGAGGCAGCTTTAGCTCGGCA
ACAGGATGGCCGACCGGAAGAGGCGGATGATACTGGGGGCGGAGCGGGGA
TCGTGAATGTTGCGATAGCACGCGGTATGCCGAGACCAGACGGAAACACC
GATGATTCAACGTCAAGGTACTGAATACCATCGTATATCCATTTCGTCTG
TCAATCGGTGTTGAGCTGCTGCTGGTATGCACAGCAGTAGCGCGAACACT
GCAAGCTTCATGTTGCCAATCTACTGCGGTACACGACACCAGACCTGCAC
CGCGCTATTTATTACGTCCCCACTCATATCGTGCACACGTAGATAGGCGC
AGAGCATAGGAAAGATTTAGCTTTCCCGAAAAGATGAGGTTGTGCGAGGA
TACCAACTGCGCAAAGGGAAGGATTTGGGTATCTGTACCTGGAGCGCCCG
GCGGAGTGCCCTAGAGCAGTGGTTCCTACACAAAGAGTGTGTGTCTTTTG
ATGTGTGCACGGCAATGATGCGCCTGCCTCTAGGTTGGGAACCTTGCCGT
GTAATTGAGGGTTAGGTTTACTGTACACATGGACAGTATTAGGCGTGAGG
TCCGCAAGAGGACATCCTATTTACCACACATGTATACACCGTTCACCGCA
GAGGTTGATTTTGCAGAGGCTGACCAAGAGCATCAACGTTCCCTTGTGTG
CTCTGTGTCTGTGTGTCTTCCCTTTCATTGCTGTTTTGCCCCTCTTGTCC
CTACACTCGCTCGCTCGCTGTGCGATTCGTTTTCCTATTGTACCCGTTCT
TCTAGGGCTGAGGCACTGAACTTCATGCGCTCCGAACTTCAGCTCCTGTG
CATAGAAGCGCATCGGAGACGTAAAGAGGTGAGAAAACGCGAAACACCCA
CGCAAGCCTCCTCCTTCTGTGCGGTCCAAGGGAAAATTGATCAGGAACCA
GTGTTTCGTGGTACGCTGAAAAACGTGCAGAAACGGCACGCGGTGTGATA
CACTGCGTACATGTATGCAAGGTTTTCTGCAGTAGACTAGTAGAGCACCG
CCAACGTAAACCTGGCTCTCACGAGGTGAAACTCCCCACGGCGTTCCGTT
TCCTCGTGGCAAAAGGAATACTGATATTCGACAGCAACAGCATGCGCGTC
ACAACGCCCGCACGCTCGCCCCCCCTGCTCCGCCCCCATACCCACACATC
CACCCGATCTCGAAAGAGCAAGCCCCTGCTCGACGGACTGGAACTGACGG
CCGCACAGAAGCAGACGGTGGACAGAGTTCACGCGGCCATCGCCGCGGAC
TTCGCCCTCCGACGGCTCATGCTGCTAAGGCGCTGTGACGTGACCGTGCG
GTCCTTCCTGCGTGACAGCATCAGCGGCGGCAGCGGTGTCGGAGAAAGAA
CGCACGGTGGAGAGAGCGCAGGGGGGAAGGGGGGACAAGGAGAGGCAGGA
GGAGCTGCGGATAGAAGTGGTGGTGGCGACGAAGAGAAGTTTGCCGACCT
TCCGCCCACCTTGAGAGTGAGAGACGACCCCTGTATGTTGAGATGGGAAG
GATCATTGTATTCGCAGAGCAGTGTGGAGGTCAGGATATGGAAATTCAGG
AAGCACAGACGCACGTACACTCAACAGTAGTGGTAATTGTTTCTTGTACA
GTAATATTCTTAAGTGTTTGTTACAATGGTTGTATGCGATCGATCAACAG
TAGCACCCCCTGTCTAACGATTGTTCAAGTTGACGTTGCAAGAAGACGAT
ACATGTATGTGATCGTGATGGTTGCCCCCCCACTGGTGACGCTTCGCAAT
CCTTTGCAGACAAAGCGACAGGCGCTCTTGGACAAGCCTCGGGAAATCAC
GGTAGATGACGCGCTGATCGCTCCGACTTCGGTGGCTCGGCAGCATACCC
ACAAGACAGCAGAAGTGAGTACGCTATATTTTTCTATGTGCTACCATCAA
CTATTTTGATCTGATTTCGCTCATCCATAAGGGCGACAAGGATACCCCTT
CTCTGTCATACATCTGCTCCCCGCTTTGGTTTCCCCCTCTCTCCATGCCC
CCCCACCTGACGCTTGTTTCCGATTTTTGTATTTTAACCCAAAAGGAATA
CGACGGCGACGGTGGCGGCCACGGCGAGCATTCCAAGAAGACAACGAAGG
CTGCCTTACCAACCGCCGACATCGCCGAGGTTTCTGATCGTGGCGGGCGC
GTGAGCGATGCCCGCGGCGGGCCGGTCTGGAAGACCCGTAAGGAATTCGA
CAAAGCTGCCGCTGCTGCTGCTTTCTCAGGGAAAAGGGGTGGCGGTCGTG
GCGGCGGGCGCGGCAGCGGTGGCAAGCGAGGCGAGAAAAAAGGAGGCGGC
GGCGGTGGAAGAGGTGCGGGCGAGGAGCAAGGGAAAAAGGAGCGTGGGAA
CCGTCGTGGCGGTGGCGGTGGTG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:121664..124236-

>mRNA_Ecto-sp6_S_contig9.17996.1 ID=mRNA_Ecto-sp6_S_contig9.17996.1|Name=mRNA_Ecto-sp6_S_contig9.17996.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1122bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:121664..124236- (Ectocarpus species6 EcLAC_371)
CTCGAACACACAGCAGGCAGGTCTCGTCCACCCCCGCGTCTCTCGCGTGC
AATGGACGTCGCATTGGAAGATGTTAATTTTCTCCTGTCCGACCTTGATC
TTGGCGTGGTCGGGCATCAGGATGGCGAGGACAACTTAAAAAAATCCTCC
GTCGTGGTAACAGAGCAAGTACGGGCTCTCGAGGCAGCTTTAGCTCGGCA
ACAGGATGGCCGACCGGAAGAGGCGGATGATACTGGGGGCGGAGCGGGGA
TCGTGAATGTTGCGATAGCACGCGGTATGCCGAGACCAGACGGAAACACC
GATGATTCAACGTCAAGGGCTGAGGCACTGAACTTCATGCGCTCCGAACT
TCAGCTCCTGTGCATAGAAGCGCATCGGAGACGTAAAGAGAGCAAGCCCC
TGCTCGACGGACTGGAACTGACGGCCGCACAGAAGCAGACGGTGGACAGA
GTTCACGCGGCCATCGCCGCGGACTTCGCCCTCCGACGGCTCATGCTGCT
AAGGCGCTGTGACGTGACCGTGCGGTCCTTCCTGCGTGACAGCATCAGCG
GCGGCAGCGGTGTCGGAGAAAGAACGCACGGTGGAGAGAGCGCAGGGGGG
AAGGGGGGACAAGGAGAGGCAGGAGGAGCTGCGGATAGAAGTGGTGGTGG
CGACGAAGAGAAGTTTGCCGACCTTCCGCCCACCTTGAGAACAAAGCGAC
AGGCGCTCTTGGACAAGCCTCGGGAAATCACGGTAGATGACGCGCTGATC
GCTCCGACTTCGGTGGCTCGGCAGCATACCCACAAGACAGCAGAAGAATA
CGACGGCGACGGTGGCGGCCACGGCGAGCATTCCAAGAAGACAACGAAGG
CTGCCTTACCAACCGCCGACATCGCCGAGGTTTCTGATCGTGGCGGGCGC
GTGAGCGATGCCCGCGGCGGGCCGGTCTGGAAGACCCGTAAGGAATTCGA
CAAAGCTGCCGCTGCTGCTGCTTTCTCAGGGAAAAGGGGTGGCGGTCGTG
GCGGCGGGCGCGGCAGCGGTGGCAAGCGAGGCGAGAAAAAAGGAGGCGGC
GGCGGTGGAAGAGGTGCGGGCGAGGAGCAAGGGAAAAAGGAGCGTGGGAA
CCGTCGTGGCGGTGGCGGTGGT
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