mRNA_Ecto-sp6_S_contig9.17989.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.17989.1
Unique NamemRNA_Ecto-sp6_S_contig9.17989.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.17989.1 vs. uniprot
Match: D7G760_ECTSI (SPRY domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G760_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 8.000e-56
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1 
Query:    1 PCVGLDSHCCVAVNFGAKPFAFDVPAFEALFTGAALGSAPPVRERRCHTDDIKKVYSGRHGFTNPRVLCPHLRLQPPVDEERQNDA 258
            PCVGLDSHCCVAVNFGAKPFAFDVPAFEALFTGAALGSAPPVRERRCHTDDIKKVYSGR+GFTNPRVLCPHLRLQPPVDEERQNDA
Sbjct:  347 PCVGLDSHCCVAVNFGAKPFAFDVPAFEALFTGAALGSAPPVRERRCHTDDIKKVYSGRNGFTNPRVLCPHLRLQPPVDEERQNDA 432
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BLAST of mRNA_Ecto-sp6_S_contig9.17989.1 vs. uniprot
Match: A0A6H5JJI9_9PHAE (SPRY domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJI9_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 9.170e-50
Identity = 78/86 (90.70%), Postives = 81/86 (94.19%), Query Frame = 1 
Query:    1 PCVGLDSHCCVAVNFGAKPFAFDVPAFEALFTGAALGSAPPVRERRCHTDDIKKVYSGRHGFTNPRVLCPHLRLQPPVDEERQNDA 258
            PCVGLDSHCCV VNFG KPFAFDVPAFEALFTGAALGSAPPVRERRCHTDDIK VY GR+GFTNPR+LCPHLRLQPPVDEE Q+DA
Sbjct:  468 PCVGLDSHCCVTVNFGVKPFAFDVPAFEALFTGAALGSAPPVRERRCHTDDIKNVYCGRNGFTNPRLLCPHLRLQPPVDEEGQDDA 553
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.17989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G760_ECTSI8.000e-5698.84SPRY domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JJI9_9PHAE9.170e-5090.70SPRY domain-containing protein (Fragment) n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:29203..30307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score190.3
Seed ortholog evalue3.8e-46
Seed eggNOG ortholog2880.D7G760
Model size258
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
EggNOG OGsKOG1477@1,KOG1477@2759
Cds size258
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350515.5858202-CDS-Ecto-sp6_S_contig9:29202..293161682350515.5858202-CDS-Ecto-sp6_S_contig9:29202..29316Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 29203..29316 -
1682350515.5984027-CDS-Ecto-sp6_S_contig9:30163..303071682350515.5984027-CDS-Ecto-sp6_S_contig9:30163..30307Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 30164..30307 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.17989.1prot_Ecto-sp6_S_contig9.17989.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 29203..30307 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.17989.1

>prot_Ecto-sp6_S_contig9.17989.1 ID=prot_Ecto-sp6_S_contig9.17989.1|Name=mRNA_Ecto-sp6_S_contig9.17989.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=86bp
PCVGLDSHCCVAVNFGAKPFAFDVPAFEALFTGAALGSAPPVRERRCHTD
DIKKVYSGRHGFTNPRVLCPHLRLQPPVDEERQNDA
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mRNA from alignment at Ecto-sp6_S_contig9:29203..30307-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.17989.1 ID=mRNA_Ecto-sp6_S_contig9.17989.1|Name=mRNA_Ecto-sp6_S_contig9.17989.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1105bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:29203..30307- (Ectocarpus species6 EcLAC_371)
CCGTGTGTCGGGCTCGACAGCCACTGCTGCGTGGCTGTCAACTTCGGCGC
CAAGCCTTTCGCCTTCGACGTACCCGCGTTTGAGGCGCTCTTTACTGGCG
CGGCGCTAGGCTCTGCTCCCCCTGTGCGGGAGCGCAGGTGTCATGTGAGA
GCCGTTATTCTTGCCCCCGCCGCACGAAGTTGAAGACATTTTCGTCCCTG
TTCTTCTGAAATGCAAGGGGTTTGATTTGATGGGTCAACGGTTATCCACC
CCACGCCTCGTCAATATTTGCGCTGTCGGGCTCAGACGGCGGTTACTGAT
GCGACACACCCCTGACTCCCCCCCGCTCCCCATGCCATTTAACTTTTGGT
AGGCGACTTCCCTTTGCGAACATCTACTGCTTTGTGGCGTTGCCTTTTCC
CTCATTCTTGTGGATGGTTTGTCTGTGGCGTTTTCTGTGTGCGGTTGAAG
AATACTTCGTACGGGCTGCGGAGGCTTTTTGGCTGGCAGCAGTATCAGGG
GAATGGAATTTTTCAATTAGGGTTAAACTCCGGAGAAGTGGAAAAGAACA
TCACCGCAAGCTTTAGCTTGCTAGCTTGGGGACCGTTTTAATTCGAGGTT
TTAACCTTTAGTCTAATAAAAAAAAAAAGTAAACTAAGTATTGTCTTGCT
CCGAAACACTTGGGGGTAAGGAATGATCTGTTGGGTGCGATTTTGCGAAC
TGATTAACCTCTCAATTGCAACGGTTGAGAGGAATAATCGTTTTTGTTCG
ATGCACGTGGGTCAGTTGGCCTTTTTATGTTGTTGCTTCGTCTTTTTCCC
GCCGAAGCTGGCGTGTTCAAGATTTTTTTACGACAGTAGCGTTGCGACTG
ACACTCTGATGTGTCTCCGGAGCCTGCACCATTCTGCATCGGAGTGAGTG
CTGGCCTGATCGCGGTTCCTTTGTCCGTGAAAAACCGTGACAACGCCCCT
GTTTGCGTGCCCCCCACCACCCACCCCCGCGTGCTCGACAGACGGATGAC
ATAAAGAAGGTGTACTCTGGCAGGCACGGCTTCACCAACCCCCGCGTTCT
CTGCCCGCACCTGCGGCTGCAGCCCCCTGTGGATGAGGAGAGACAGAATG
ATGCT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:29203..30307-

>mRNA_Ecto-sp6_S_contig9.17989.1 ID=mRNA_Ecto-sp6_S_contig9.17989.1|Name=mRNA_Ecto-sp6_S_contig9.17989.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:29203..30307- (Ectocarpus species6 EcLAC_371)
CCGTGTGTCGGGCTCGACAGCCACTGCTGCGTGGCTGTCAACTTCGGCGC
CAAGCCTTTCGCCTTCGACGTACCCGCGTTTGAGGCGCTCTTTACTGGCG
CGGCGCTAGGCTCTGCTCCCCCTGTGCGGGAGCGCAGGTGTCATACGGAT
GACATAAAGAAGGTGTACTCTGGCAGGCACGGCTTCACCAACCCCCGCGT
TCTCTGCCCGCACCTGCGGCTGCAGCCCCCTGTGGATGAGGAGAGACAGA
ATGATGCT
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