mRNA_Ecto-sp6_S_contig89.17983.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig89.17983.1
Unique NamemRNA_Ecto-sp6_S_contig89.17983.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig89.17983.1 vs. uniprot
Match: D7G267_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G267_ECTSI)

HSP 1 Score: 531 bits (1367), Expect = 3.180e-188
Identity = 275/358 (76.82%), Postives = 291/358 (81.28%), Query Frame = 1 
Query:    1 MDTPPSAYGRYFTTQADGKCRKSPLHSLMAPLSSWRVGPFAFDGAGQSYPKLLEGMTVVVRSPEDLVEVATLMDGPAADGTYQVHFPTWDKIYHLSGEILAVSLETRLHLHQMDAMKQEISSLKAQVREQDAYISELKRKEMTTAAALIKKKGECERAEERISK------------------------------------------VVLGERVMLSSAGEHDYGSNLPSPADLVQRIASIQDQLFVDWVAEALGDPYNTWLVAYEDIVKALLLTFLECEVQRSAPLKFSEKFGSREAWNPSEHHKDTFDPSYEGDKLVEGNTQVQVVIPRLFWEKKMADDDSFSRFFETQASFVVPSA 948
            MD PPSAYGRY  TQADGKC K PL+SLMAPLSSW VGP AFDGAGQ YPKL EGMTV+ RSP+DL+E+ TLM+GPAADGTYQVH P WDKIYHLSG+ILAVSLETRLHLHQMDAMKQ+I S KAQV  QDA IS+L+RKEMTTAAA  K+K ECERA+E +SK                                          +V GER+MLSSAGEHDYGSNLPSPADLVQRIASIQDQLFVDWVAEALGDP NTWLVAYEDIVKALLLTFLECEVQRSAPLKFSEKFGSREAWNPSEHHKDTFDPSYEGDKLVEGNTQVQVVIPRLFWEKKMADDDS SR+FETQASFVVPSA
Sbjct:    1 MDKPPSAYGRYLITQADGKCWKLPLYSLMAPLSSWWVGPSAFDGAGQPYPKLPEGMTVLARSPDDLMELVTLMNGPAADGTYQVHSPAWDKIYHLSGKILAVSLETRLHLHQMDAMKQDIYSFKAQVGGQDASISDLRRKEMTTAAAFTKQKSECERAKELVSKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVQGERLMLSSAGEHDYGSNLPSPADLVQRIASIQDQLFVDWVAEALGDPCNTWLVAYEDIVKALLLTFLECEVQRSAPLKFSEKFGSREAWNPSEHHKDTFDPSYEGDKLVEGNTQVQVVIPRLFWEKKMADDDSISRYFETQASFVVPSA 358
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BLAST of mRNA_Ecto-sp6_S_contig89.17983.1 vs. uniprot
Match: A0A6H5JMH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH1_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 9.560e-42
Identity = 96/214 (44.86%), Postives = 135/214 (63.08%), Query Frame = 1 
Query:   25 GRYFTTQADGKCRKSPLHSLMAPLSSWRVGPFAFDGAGQSYPKLLEGMTVVVRSPEDLVEVATLMDGPAADGTYQVHFPT--WDKIYHLSGEILAVSLETRLHLHQMDAMKQEISSLKAQVREQDAYISELKRKEMTTAAALIKKKGECERAEERISKVVLGERVMLSSAGEHDYGSNLPSPADLVQRIASIQDQLFVDWVAEALGDPYNTWLV 660
            G +  + A GK ++   + L  PL SW V P AF+       +L  GMT+   S     +   L++GP+ADG Y V   T  W K   L G+ LAV LET L+LHQ+ A+++ I +L  Q++E+ A   +L  + M+ + AL K++ + ++A +RI K+  GER+ML +AGEHDYGSNLPSPADLVQRI SIQ+Q+FVD +  ALG+  NTWLV
Sbjct:   88 GWHNLSNALGKVQQFATYELSVPLGSWLVDPSAFESGNTGVLQLPAGMTLFETSSS--YKWGQLVNGPSADGRYGVQSSTSGW-KTTPLHGQELAVPLETLLYLHQVAALERRIDTLNTQLKEKYACNIKLMTEAMSMSTALEKEQSDLKKANDRIRKIAQGERLMLDAAGEHDYGSNLPSPADLVQRIESIQEQMFVDLIHHALGNDSNTWLV 298
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig89.17983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G267_ECTSI3.180e-18876.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMH1_9PHAE9.560e-4244.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig89contigEcto-sp6_S_contig89:713557..715642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size951
Hectar predicted targeting categoryother localisation
Exons4
Cds size951
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350513.74074-CDS-Ecto-sp6_S_contig89:713556..7136601682350513.74074-CDS-Ecto-sp6_S_contig89:713556..713660Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 713557..713660 +
1682350513.757405-CDS-Ecto-sp6_S_contig89:714270..7144861682350513.757405-CDS-Ecto-sp6_S_contig89:714270..714486Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 714271..714486 +
1682350513.765369-CDS-Ecto-sp6_S_contig89:714645..7149821682350513.765369-CDS-Ecto-sp6_S_contig89:714645..714982Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 714646..714982 +
1682350513.7732-CDS-Ecto-sp6_S_contig89:715348..7156421682350513.7732-CDS-Ecto-sp6_S_contig89:715348..715642Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 715349..715642 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig89.17983.1prot_Ecto-sp6_S_contig89.17983.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig89 713557..715642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig89.17983.1

>prot_Ecto-sp6_S_contig89.17983.1 ID=prot_Ecto-sp6_S_contig89.17983.1|Name=mRNA_Ecto-sp6_S_contig89.17983.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=317bp
MDTPPSAYGRYFTTQADGKCRKSPLHSLMAPLSSWRVGPFAFDGAGQSYP
KLLEGMTVVVRSPEDLVEVATLMDGPAADGTYQVHFPTWDKIYHLSGEIL
AVSLETRLHLHQMDAMKQEISSLKAQVREQDAYISELKRKEMTTAAALIK
KKGECERAEERISKVVLGERVMLSSAGEHDYGSNLPSPADLVQRIASIQD
QLFVDWVAEALGDPYNTWLVAYEDIVKALLLTFLECEVQRSAPLKFSEKF
GSREAWNPSEHHKDTFDPSYEGDKLVEGNTQVQVVIPRLFWEKKMADDDS
FSRFFETQASFVVPSA*
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mRNA from alignment at Ecto-sp6_S_contig89:713557..715642+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig89.17983.1 ID=mRNA_Ecto-sp6_S_contig89.17983.1|Name=mRNA_Ecto-sp6_S_contig89.17983.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2086bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:713557..715642+ (Ectocarpus species6 EcLAC_371)
ATGGACACGCCACCATCCGCGTACGGTCGGTACTTCACCACCCAAGCAGA
CGGGAAGTGCAGGAAGTCACCATTGCACTCTCTCATGGCGCCGTTGTCAA
GCTGGTGAGAATTCTGCCCGAGCGTTGCGCTCATCACCCAAGCCGTTTTC
TCTTGTTCGAGCTTCAATGCCCCTATCCTAACTCGTGTGCATGCAGAAAG
CCCGGTTGGTCGTCACAGTAAAACGCGCTGTACATGTGCCGAGTCTGCGA
CGTCGAATGTATACGTTCCCAACCCTGAACGAATCCATGCTAGTCTGCAG
TGGCCAAGCCATGCTGAAGGGCTAATCAATCTACAGAGCCACGCAACTTC
CTGACCCGAACCTCCAGTTTGATACAGCGCCGCCGGGGCCAATGAGCTGA
GTCGGCACAAAGTGTTTGATGTTGCAACACGGTTTTCCCAATCTCCTAGC
CAACATCGCCTCACTGGCGGACGTCAGACCCCCTCTGGCTGATTCTTGTT
TGAAACAAGGCGCTGTGAACATGCCGCGGACCTGAACGGTACATAGCCTT
GAGAACGCGCCCACAACGTGTGCCCAGCCACCACCTTGCCCGATGGAGGC
GTCCACCATGTGGTGCATGGGTTTCTGTTTTATATTCTTCGCAGAACCGC
TTGGTTTCGACTTGTTGCACTGCTATCATCCATCGTTCCAATTTTGTATT
GAACCATGTGTCAGGCGGGTTGGACCCTTCGCCTTCGATGGGGCGGGGCA
ATCGTACCCCAAGTTGCTAGAGGGTATGACGGTGGTAGTACGATCTCCCG
AAGATTTGGTGGAGGTGGCCACTCTCATGGACGGCCCTGCCGCAGATGGA
ACCTACCAGGTTCACTTTCCGACTTGGGACAAGATTTACCACCTGAGCGG
AGAGATCCTCGCAGTCTCCCTCGAAACCCGGTAAGTGCGTGACGTATCCT
GGGTTTTGCGAAATATTAAGTGAAGGCCAGCGTTCAGTGTGGATATTGAA
GCCCGAAGCTCGTATCAGTGAGTCGTGGCGGGTGGCTTACCCACTCCCCA
CGTCATCCCTCGACCACACACTCTTGTGCTGTACCACAGGTTACACCTGC
ACCAGATGGACGCGATGAAGCAAGAAATATCCTCGCTCAAAGCCCAAGTG
CGTGAACAAGACGCTTACATCAGTGAGCTCAAGAGGAAAGAGATGACCAC
GGCCGCCGCCCTCATAAAAAAGAAAGGTGAATGTGAAAGGGCCGAAGAGC
GCATCAGCAAGGTTGTCCTGGGTGAGAGGGTCATGCTCAGCTCAGCCGGC
GAGCATGACTACGGCTCCAACCTTCCATCACCGGCTGACCTTGTCCAGCG
AATCGCAAGCATCCAAGATCAGCTCTTCGTGGACTGGGTCGCGGAAGCCC
TGGGAGATCCCTACAACACCTGGTTGGTAAGCCAGGATGCGATCGAGGCT
ATCGAAAACCCCAGGAACTTCGTGTTGCAAGTGCTTGTCGAGACAGCGCA
TGGGTGCTTTTGGCGCGTCCACGAATGTATTTCTAGGCGGATGGACCTGA
TGACAAGTGTCATCGGGGAGCTCGTGGGAGCGACCAACGATGGGCACCTT
GCTGAAGAAATGGCACAATTCAAGCGCAGCGCCTTCCACAAGGAATACAA
AGAGATGTTCGCTGAGGTGTGCCCAGCATGTCCCATCAACCAGAGCGAGC
TGGCTCGAGGTGTCTTTCACGGGCTTGACGCGTGCATCTCCGTTTCGAAG
ATTTCGCCGAATGGTCCCACCGCACTGTTCGAAGCGACACAGGTAGCCTA
CGAGGATATCGTCAAAGCCCTTCTCTTGACGTTCTTGGAGTGCGAAGTTC
AGCGGTCAGCCCCACTGAAGTTCTCGGAGAAGTTTGGAAGCAGGGAGGCT
TGGAACCCTAGCGAGCACCACAAGGATACATTCGACCCGTCGTATGAAGG
AGACAAACTCGTGGAGGGGAACACCCAGGTGCAGGTGGTCATCCCTCGCC
TTTTCTGGGAGAAGAAGATGGCTGACGATGACAGTTTTTCAAGGTTTTTT
GAAACCCAGGCTTCCTTTGTCGTTCCCAGTGCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig89:713557..715642+

>mRNA_Ecto-sp6_S_contig89.17983.1 ID=mRNA_Ecto-sp6_S_contig89.17983.1|Name=mRNA_Ecto-sp6_S_contig89.17983.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=951bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:713557..715642+ (Ectocarpus species6 EcLAC_371)
ATGGACACGCCACCATCCGCGTACGGTCGGTACTTCACCACCCAAGCAGA
CGGGAAGTGCAGGAAGTCACCATTGCACTCTCTCATGGCGCCGTTGTCAA
GCTGGCGGGTTGGACCCTTCGCCTTCGATGGGGCGGGGCAATCGTACCCC
AAGTTGCTAGAGGGTATGACGGTGGTAGTACGATCTCCCGAAGATTTGGT
GGAGGTGGCCACTCTCATGGACGGCCCTGCCGCAGATGGAACCTACCAGG
TTCACTTTCCGACTTGGGACAAGATTTACCACCTGAGCGGAGAGATCCTC
GCAGTCTCCCTCGAAACCCGGTTACACCTGCACCAGATGGACGCGATGAA
GCAAGAAATATCCTCGCTCAAAGCCCAAGTGCGTGAACAAGACGCTTACA
TCAGTGAGCTCAAGAGGAAAGAGATGACCACGGCCGCCGCCCTCATAAAA
AAGAAAGGTGAATGTGAAAGGGCCGAAGAGCGCATCAGCAAGGTTGTCCT
GGGTGAGAGGGTCATGCTCAGCTCAGCCGGCGAGCATGACTACGGCTCCA
ACCTTCCATCACCGGCTGACCTTGTCCAGCGAATCGCAAGCATCCAAGAT
CAGCTCTTCGTGGACTGGGTCGCGGAAGCCCTGGGAGATCCCTACAACAC
CTGGTTGGTAGCCTACGAGGATATCGTCAAAGCCCTTCTCTTGACGTTCT
TGGAGTGCGAAGTTCAGCGGTCAGCCCCACTGAAGTTCTCGGAGAAGTTT
GGAAGCAGGGAGGCTTGGAACCCTAGCGAGCACCACAAGGATACATTCGA
CCCGTCGTATGAAGGAGACAAACTCGTGGAGGGGAACACCCAGGTGCAGG
TGGTCATCCCTCGCCTTTTCTGGGAGAAGAAGATGGCTGACGATGACAGT
TTTTCAAGGTTTTTTGAAACCCAGGCTTCCTTTGTCGTTCCCAGTGCGTG
A
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