mRNA_Ecto-sp6_S_contig89.17962.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig89.17962.1
Unique NamemRNA_Ecto-sp6_S_contig89.17962.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig89.17962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig89contigEcto-sp6_S_contig89:497935..498866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size688
Hectar predicted targeting categorysignal anchor
Exons2
Cds size378
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350506.7462935-UTR-Ecto-sp6_S_contig89:497934..4980471682350506.7462935-UTR-Ecto-sp6_S_contig89:497934..498047Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig89 497935..498047 +
1682350506.778358-UTR-Ecto-sp6_S_contig89:498669..4988661682350506.778358-UTR-Ecto-sp6_S_contig89:498669..498866Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig89 498670..498866 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350506.7569616-CDS-Ecto-sp6_S_contig89:498047..4983511682350506.7569616-CDS-Ecto-sp6_S_contig89:498047..498351Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 498048..498351 +
1682350506.7671692-CDS-Ecto-sp6_S_contig89:498595..4986691682350506.7671692-CDS-Ecto-sp6_S_contig89:498595..498669Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 498596..498669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig89.17962.1prot_Ecto-sp6_S_contig89.17962.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig89 498048..498669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig89.17962.1

>prot_Ecto-sp6_S_contig89.17962.1 ID=prot_Ecto-sp6_S_contig89.17962.1|Name=mRNA_Ecto-sp6_S_contig89.17962.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=126bp
MEFFMWVLFFMSEPGCLSFYPVTLPVICIRSVLKRMFAAIYVVPTVVLFV
VIGLLVIASVLHVYIVRTCLKGRAEVFREERKFRGNRKYGARFLLRCCWC
DMAVFHLFLFQCVVVFFLGRGEASR*
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mRNA from alignment at Ecto-sp6_S_contig89:497935..498866+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig89.17962.1 ID=mRNA_Ecto-sp6_S_contig89.17962.1|Name=mRNA_Ecto-sp6_S_contig89.17962.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=932bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:497935..498866+ (Ectocarpus species6 EcLAC_371)
CCGGGAGTTTCACACTCCTCCTGCGACCCTCCCTCCATGCCTCTTTTGAA
GGAAATGATGCGAGGGGTTCTACTTTGTTTAGTTATTCTCTGGAGCGCAG
TCTATAACTTGGAATGGAATTTTTTATGTGGGTACTATTTTTCATGTCGG
AACCTGGTTGTTTGTCTTTTTATCCTGTGACTTTACCTGTGATATGTATA
CGGTCCGTGTTAAAGCGCATGTTCGCAGCTATCTATGTAGTTCCGACTGT
GGTTTTATTCGTGGTCATTGGTCTTTTGGTCATCGCTAGTGTCTTGCACG
TCTACATCGTACGTACATGCCTGAAGGGAAGGGCGGAGGTTTTTAGGGAA
GAGCGGAAGTTTCGTGGAAATAGAAAATATGGTGCGCGGTTTTTGCTCCG
CTGCTGTTGGTGCGACACCGAAGCCTGAGAGAGGATGCGTTTTTTGGTGA
GGAGGCTGACTATGTGTGTAGCGCAGGTTTGTTTTCGTTGAAAGGGCACT
CGATCAAGCAGCGGAGCGAGCAGCTGATGGTGCCTGAAAGGTTATGTAGC
TACGAGACCTAAGAGCACGCGCAGCATTTTATGTACGTAGTGTCAGGCCG
TGCGCGCAGCGATTAGGTGTGCTGATGCGCGCACAGCATCAACCGACATT
GATTTCCGATGTGGCGGTTTTTCATCTCTTTTTATTCCAGTGTGTGGTAG
TGTTTTTTCTTGGTCGTGGGGAAGCAAGCCGTTAACTCATCAATTCGGTT
CCTCCGAAGGACGGTGGTGGTGTAAATATGTACCGTATACGCTATCATAC
GTGGTTGACGAGCAACGTGCGTACATGAAAAACAAAAAAATTGTAGACCC
TTAGCTACATGGATAGAGATGGTTTGTTGTGTTATTATTAAGAAAAATAT
ACTTTAGGTGAACGACTTACTCTCTTTCCTTT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig89:497935..498866+

>mRNA_Ecto-sp6_S_contig89.17962.1 ID=mRNA_Ecto-sp6_S_contig89.17962.1|Name=mRNA_Ecto-sp6_S_contig89.17962.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:497935..498866+ (Ectocarpus species6 EcLAC_371)
ATGGAATTTTTTATGTGGGTACTATTTTTCATGTCGGAACCTGGTTGTTT
GTCTTTTTATCCTGTGACTTTACCTGTGATATGTATACGGTCCGTGTTAA
AGCGCATGTTCGCAGCTATCTATGTAGTTCCGACTGTGGTTTTATTCGTG
GTCATTGGTCTTTTGGTCATCGCTAGTGTCTTGCACGTCTACATCGTACG
TACATGCCTGAAGGGAAGGGCGGAGGTTTTTAGGGAAGAGCGGAAGTTTC
GTGGAAATAGAAAATATGGTGCGCGGTTTTTGCTCCGCTGCTGTTGGTGC
GACATGGCGGTTTTTCATCTCTTTTTATTCCAGTGTGTGGTAGTGTTTTT
TCTTGGTCGTGGGGAAGCAAGCCGTTAA
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