mRNA_Ecto-sp6_S_contig89.17955.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig89.17955.1
Unique NamemRNA_Ecto-sp6_S_contig89.17955.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig89.17955.1 vs. uniprot
Match: A0A6H5KH83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH83_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.120e-29
Identity = 57/63 (90.48%), Postives = 57/63 (90.48%), Query Frame = -1 
Query:  118 NSAYGVLPKYAGPVHALKTVLREEGAAALFRGTVPAMWKTGVSTAVTYVVYEWVRASTAVTLD 306
            NS YGVLPKYAGPVHA KTVLREEGAAALFRGTVPAMWKTGVSTAVTY VYEWVR  TAV LD
Sbjct:  340 NSTYGVLPKYAGPVHAFKTVLREEGAAALFRGTVPAMWKTGVSTAVTYAVYEWVRVGTAVALD 402
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig89.17955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KH83_9PHAE2.120e-2990.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig89contigEcto-sp6_S_contig89:460773..461078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size306
Hectar predicted targeting categoryother localisation
Exons1
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350507.059093-CDS-Ecto-sp6_S_contig89:460772..4610781682350507.059093-CDS-Ecto-sp6_S_contig89:460772..461078Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 460773..461078 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig89.17955.1prot_Ecto-sp6_S_contig89.17955.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig89 460773..461078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig89.17955.1

>prot_Ecto-sp6_S_contig89.17955.1 ID=prot_Ecto-sp6_S_contig89.17955.1|Name=mRNA_Ecto-sp6_S_contig89.17955.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=102bp
ARFHLFSVCTSRHGQSPRNNQQSSVRQEHTTPPPPNTLSVQCDSRARPDP
LVHHVSHRGRDPGFPHGGDRSPEQRGGALLPQHGLQRVNGSRVLGENAVG
RV
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mRNA from alignment at Ecto-sp6_S_contig89:460773..461078+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig89.17955.1 ID=mRNA_Ecto-sp6_S_contig89.17955.1|Name=mRNA_Ecto-sp6_S_contig89.17955.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=306bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:460773..461078+ (Ectocarpus species6 EcLAC_371)
GCCCGTTTCCACTTGTTCTCTGTATGTACATCGAGGCACGGCCAGTCGCC
GAGAAACAATCAACAGTCAAGCGTCAGACAAGAGCACACTACGCCCCCCC
CCCCCAACACTCTCTCAGTCCAGTGTGACAGCCGTGCTCGCCCTGACCCA
CTCGTACACCACGTAAGTCACCGCGGTCGAGACCCCGGTTTTCCACATGG
CGGGGACCGTTCCCCGGAACAGCGCGGCGGCGCCCTCCTCCCTCAACACG
GTCTTCAACGCGTGAACGGGTCCCGCGTACTTGGGGAGAACGCCGTAGGC
CGAGTT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig89:460773..461078+

>mRNA_Ecto-sp6_S_contig89.17955.1 ID=mRNA_Ecto-sp6_S_contig89.17955.1|Name=mRNA_Ecto-sp6_S_contig89.17955.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:460773..461078+ (Ectocarpus species6 EcLAC_371)
GCCCGTTTCCACTTGTTCTCTGTATGTACATCGAGGCACGGCCAGTCGCC
GAGAAACAATCAACAGTCAAGCGTCAGACAAGAGCACACTACGCCCCCCC
CCCCCAACACTCTCTCAGTCCAGTGTGACAGCCGTGCTCGCCCTGACCCA
CTCGTACACCACGTAAGTCACCGCGGTCGAGACCCCGGTTTTCCACATGG
CGGGGACCGTTCCCCGGAACAGCGCGGCGGCGCCCTCCTCCCTCAACACG
GTCTTCAACGCGTGAACGGGTCCCGCGTACTTGGGGAGAACGCCGTAGGC
CGAGTT
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