mRNA_Ecto-sp6_S_contig89.17939.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig89.17939.1
Unique NamemRNA_Ecto-sp6_S_contig89.17939.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig89.17939.1 vs. uniprot
Match: D8LKE7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKE7_ECTSI)

HSP 1 Score: 532 bits (1371), Expect = 9.880e-191
Identity = 263/279 (94.27%), Postives = 265/279 (94.98%), Query Frame = 1 
Query:    1 MVRTCASPKATGGFAGPGSLIDGGVMGGFGVTEVDIQPWGEIELTDANLGSVYVSGKFVRHDSAALPFSSAVFFYIENADQPDDFARGSFKIRGASGDFSMVVMDVPPGNSRLFLSFVIEDREEALNVAAEVVPAKSILSLDISNMGCVPSLTITHEWIGGSFAPYEITEPDLTTINSGHGDVSGGVGVFQDNWAGSSPAAKRYILYSGLDVDTSQVLGEYKGRKFLPFVPSETPPTWRIPARVSGEIVCMYKEEQVQSDTVEFTVLLTDYDPRCGVPP 837
            MVRTCASPKATGGFAGPGSLIDGGVMGGFGVTEVDIQPWGEIELTDANLGSVYVSGKFVRHDSAALPFSSAVFFYIENADQPDDFARGSFKIRGASGD SM+V DVPPGNSRLFLSFVIED  EALNVAAEVVPA SI SLDISNMGCVPSLTITHEWIGG+FAPYEITEPDL TINS HGDVSGGVGVFQDNWAGSSPAAKRYILYSGLDVDTSQVLGEYKGR FLPFV SETPPTWR  ARVSGEIV MYKEEQVQSDTVEFTVLLTDYDP CGVPP
Sbjct:    1 MVRTCASPKATGGFAGPGSLIDGGVMGGFGVTEVDIQPWGEIELTDANLGSVYVSGKFVRHDSAALPFSSAVFFYIENADQPDDFARGSFKIRGASGDLSMLVTDVPPGNSRLFLSFVIEDPAEALNVAAEVVPATSIFSLDISNMGCVPSLTITHEWIGGNFAPYEITEPDLNTINSDHGDVSGGVGVFQDNWAGSSPAAKRYILYSGLDVDTSQVLGEYKGRMFLPFVTSETPPTWRSTARVSGEIVYMYKEEQVQSDTVEFTVLLTDYDPSCGVPP 279
[Close]
BLAST of mRNA_Ecto-sp6_S_contig89.17939.1 vs. uniprot
Match: A0A6H5JLL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLL4_9PHAE)

HSP 1 Score: 504 bits (1299), Expect = 7.400e-169
Identity = 249/270 (92.22%), Postives = 254/270 (94.07%), Query Frame = 1 
Query:   28 ATGGFAGPGSLIDGGVMGGFGVTEVDIQPWGEIELTDANLGSVYVSGKFVRHDSAALPFSSAVFFYIENADQPDDFARGSFKIRGASGDFSMVVMDVPPGNSRLFLSFVIEDREEALNVAAEVVPAKSILSLDISNMGCVPSLTITHEWIGGSFAPYEITEPDLTTINSGHGDVSGGVGVFQDNWAGSSPAAKRYILYSGLDVDTSQVLGEYKGRKFLPFVPSETPPTWRIPARVSGEIVCMYKEEQVQSDTVEFTVLLTDYDPRCGVPP 837
            ATGGFAGPGSLIDGGVMGGFGVTEVDIQPWGEIELTDANLGSVYVSGKFVRHDSA LPFSSAVFFYIENADQPDD ARGS KIRG SGDFSMVVMDVPPGNSRLFLSFVI+D  EALNVAAEVVPA SI SL ISNM CVPSLTITHEWIGG+FAPYEITEPDLTTI+SGHG+ SGGVGVFQDNWAGSSPAAKRYILYSGLDVDTSQVLGEYKGRKFLP +PSETPPTWRI ARVSGEIV MYKEEQVQSD VEFTVLLTDYDP CGVPP
Sbjct:  814 ATGGFAGPGSLIDGGVMGGFGVTEVDIQPWGEIELTDANLGSVYVSGKFVRHDSAPLPFSSAVFFYIENADQPDDIARGSSKIRGTSGDFSMVVMDVPPGNSRLFLSFVIKDPAEALNVAAEVVPATSIFSLQISNMACVPSLTITHEWIGGNFAPYEITEPDLTTIHSGHGNYSGGVGVFQDNWAGSSPAAKRYILYSGLDVDTSQVLGEYKGRKFLPILPSETPPTWRITARVSGEIVYMYKEEQVQSDIVEFTVLLTDYDPSCGVPP 1083
[Close]
BLAST of mRNA_Ecto-sp6_S_contig89.17939.1 vs. uniprot
Match: D7G5D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D6_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 1.810e-52
Identity = 125/286 (43.71%), Postives = 158/286 (55.24%), Query Frame = 1 
Query:    4 VRTCASPKATGGFAGPGSLIDGGVMGGFGVTEVDIQPWGEIELTDANLGSVYVSGKFVRHDSAALPFSSAVFFYIENADQPDDFARGSFKIRGASGDFSMVVMDVPPGNSRLFLSFVIEDREEALNVAAEVVPAKSILSLDISNMGCVPSLTITHEWIGGSFAPYEITEPDLTTINSGHGDV-----SGGVGVFQDNWAGSSPAAKRYILYSGLDVDTSQVLGEYKGRKFLPFVPSETPPTWRIPARVSGEIVCMYKEEQV---QSDTVEFTVLLTDYDPRCGVPP 837
            +    +  A GGFAGPGSL                 P G I+LT+ + GSV +SG FVR D AALP S++VF Y EN  QPDDF RG   +  ++G FS VV D+P G+SRL LSFV+ D  EAL+ A     A +  +LD+SN  CVPSLTIT EW G      EI++ DL  +  G G+V      GG   F DN        + YI+ S LD   SQVLGEY+    L +       TWR+ ARVSGE+V + + + +   QSDT  F V L+ YDP CG  P
Sbjct:  183 IAAAMAADAMGGFAGPGSLTT--------------TPAGTIQLTEEDGGSVSLSGTFVRDDGAALPSSTSVFIYTENTAQPDDFVRGQEALDPSTGAFSTVVTDIPAGSSRLLLSFVVVDPAEALDTAG----ADTAFALDVSNSACVPSLTITLEWTG------EISDVDLYVVEPG-GEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKL-YSGDAATETWRLTARVSGEVVWIEEGDFISSTQSDT--FAVSLSVYDPTCGGVP 440
[Close]
BLAST of mRNA_Ecto-sp6_S_contig89.17939.1 vs. uniprot
Match: D7G3X5_ECTSI (VWFD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X5_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 1.120e-50
Identity = 124/286 (43.36%), Postives = 157/286 (54.90%), Query Frame = 1 
Query:    4 VRTCASPKATGGFAGPGSLIDGGVMGGFGVTEVDIQPWGEIELTDANLGSVYVSGKFVRHDSAALPFSSAVFFYIENADQPDDFARGSFKIRGASGDFSMVVMDVPPGNSRLFLSFVIEDREEALNVAAEVVPAKSILSLDISNMGCVPSLTITHEWIGGSFAPYEITEPDLTTINSGHGDV-----SGGVGVFQDNWAGSSPAAKRYILYSGLDVDTSQVLGEYKGRKFLPFVPSETPPTWRIPARVSGEIVCMYKEEQV---QSDTVEFTVLLTDYDPRCGVPP 837
            +    +  A GGFAGPGSL                 P G I+LT+ + GSV +SG FVR D AALP S++VF Y EN  QPDDF RG   +  ++G FS VV D+P G+SRL LSFV+ D  EAL+ A     A +  +LD+SN  CVPSLTIT EW G      E ++ DL  +  G G+V      GG   F DN        + YI+ S LD   SQVLGEY+    L +       TWR+ ARVSGE+V + + + +   QSDT  F V L+ YDP CG  P
Sbjct:  309 IAAAMAADAMGGFAGPGSLTT--------------TPAGTIQLTEEDGGSVSLSGTFVRDDGAALPSSTSVFIYTENTAQPDDFVRGQEALDPSTGAFSTVVTDIPAGSSRLLLSFVVVDPAEALDTAG----ADTAFALDVSNSACVPSLTITLEWTG------ETSDVDLYVVEPG-GEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKL-YSGDAATETWRLTARVSGEVVWIEEGDFISSTQSDT--FAVSLSVYDPTCGGVP 566
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig89.17939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LKE7_ECTSI9.880e-19194.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLL4_9PHAE7.400e-16992.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5D6_ECTSI1.810e-5243.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3X5_ECTSI1.120e-5043.36VWFD domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig89contigEcto-sp6_S_contig89:345325..347295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score183.3
Seed ortholog evalue1.5e-43
Seed eggNOG ortholog2880.D7G3X5
Model size840
KEGG koko:K22017
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Sushi, nidogen and EGF-like
EggNOG OGsKOG4291@1,KOG4291@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_002700.1
Cds size840
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350510.066899-CDS-Ecto-sp6_S_contig89:345324..3456091682350510.066899-CDS-Ecto-sp6_S_contig89:345324..345609Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 345325..345609 -
1682350510.080226-CDS-Ecto-sp6_S_contig89:345779..3463071682350510.080226-CDS-Ecto-sp6_S_contig89:345779..346307Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 345780..346307 -
1682350510.0904124-CDS-Ecto-sp6_S_contig89:347268..3472951682350510.0904124-CDS-Ecto-sp6_S_contig89:347268..347295Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 347269..347295 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig89.17939.1prot_Ecto-sp6_S_contig89.17939.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig89 345325..347295 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig89.17939.1

>prot_Ecto-sp6_S_contig89.17939.1 ID=prot_Ecto-sp6_S_contig89.17939.1|Name=mRNA_Ecto-sp6_S_contig89.17939.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=280bp
MVRTCASPKATGGFAGPGSLIDGGVMGGFGVTEVDIQPWGEIELTDANLG
SVYVSGKFVRHDSAALPFSSAVFFYIENADQPDDFARGSFKIRGASGDFS
MVVMDVPPGNSRLFLSFVIEDREEALNVAAEVVPAKSILSLDISNMGCVP
SLTITHEWIGGSFAPYEITEPDLTTINSGHGDVSGGVGVFQDNWAGSSPA
AKRYILYSGLDVDTSQVLGEYKGRKFLPFVPSETPPTWRIPARVSGEIVC
MYKEEQVQSDTVEFTVLLTDYDPRCGVPP*
back to top

mRNA from alignment at Ecto-sp6_S_contig89:345325..347295-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig89.17939.1 ID=mRNA_Ecto-sp6_S_contig89.17939.1|Name=mRNA_Ecto-sp6_S_contig89.17939.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1971bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:345325..347295- (Ectocarpus species6 EcLAC_371)
ATGGTGCGAACGTGTGCGTCCCCCAAGGTACGCGCCTCACTTAGTGTAGT
TGGATGTGCGCCAAACTTTCACCCATGGCTCAGATGGTTCGCGTGAACGT
TTCGACTTTATTGGCACGACGAAGACTTTTCCTGGTGTAGTTGTCTACCG
CTGTTGAGAAGCTCTCGCCGTGGGAAGATGAACGCTGGTTTGATTTTTTC
TTTGTTGGAAAAGTGCAGCAAACGAACGGCATACATACAGAGCCAAAGCT
GAATCATGCACGGGTAGTCACGCTGGAGTTGTCGCTTGGCTTTCTCTTGT
CCACGAGAGGCAGGAAACGAGCGCTATTTTCACATCTATGTGTTGGACTC
TCGCCGTCGGAATTCTCCGCGTGAAACGGGCATTTTTCACCTATCGTTTA
CGCTGCCCAAACATCTGCACCCTACTCCCCTTGGATTGTTCGTTGAACCA
GGGGTCCCCACAGTAGCTCTCCCCTCCAAGGCTCTCGTCGCCGCCATGTT
AGCTGACGTGAGTATCTGTGTGGTTTCTCGAGTGAGGGTAAAAATTGGTG
ACATTGTAAGCGGGCGCGGCGAGGGAGGGATAGTGTGTCTACAACAGTCC
CTAAAAAATGTCAAGTCGGGCATACGCTATTGACATTGACAGTAGTACCA
AACACAAAGAATGCACCACGCCCGTGCTTCCATAAAATCCACACCCGTTT
CTTGGTTTTCATTCTGACGTTTGACATGGTGACGTGGCCATGGGACGAGA
AACCAGCGGCGGTTTGTCACCTCATGATTAGTTGCAGCAATACCATGTTG
TGGCGAAGGGAGATGATACCAGACCACGCCCAAAGCTCTAGTGTCCCAGA
GGCGTCTACGAAGCTGATAGCCCTCTGTGGGGTACGGGCAACCGTGAACC
GAATCAACCTGTCATGCCATACAAAATAACTTGCACTACGTATTATGCGA
CGATCCATGTACATGTATTTTTGGATACCCACGCACAGGCGACGGGTGGC
TTCGCTGGTCCGGGATCCCTCATCGACGGAGGAGTGATGGGTGGGTTCGG
CGTTACCGAAGTGGACATTCAACCATGGGGCGAGATCGAGCTCACCGACG
CGAACCTCGGATCCGTCTACGTGTCCGGCAAGTTCGTCCGCCACGACAGT
GCGGCGCTGCCCTTCTCGTCGGCCGTCTTCTTCTACATCGAGAACGCAGA
CCAGCCGGACGACTTTGCACGCGGCAGCTTCAAAATACGAGGCGCATCCG
GAGATTTCTCGATGGTCGTGATGGACGTCCCTCCTGGAAACAGCAGGCTA
TTCCTCAGCTTTGTCATCGAGGATCGCGAGGAGGCGCTGAACGTCGCGGC
GGAGGTGGTGCCGGCAAAGTCAATACTCTCGCTTGACATCTCCAACATGG
GATGCGTCCCGTCTTTGACCATCACTCACGAGTGGATTGGTGGCAGTTTT
GCTCCCTATGAGATCACTGAACCCGACCTAACCACCATCAACTCCGGCCA
TGGGGACGTTTCCGGGGTAAGTGGGGAGAGTGCCGCTTGCGCGCGTGCGT
ATTTGTGGGTGATGTGCGGTGTTGCGTTGTTGTTAGCTGGCAATGCGCTT
GCCTCACTAACAAGTAGTTTTCTCGTCCCCGATGTCCGGGTGCCTCAAAC
CCACCAATACACGGCGCATGATTCTGTCTTCTGCAGGGCGTCGGAGTCTT
CCAGGACAATTGGGCAGGAAGCTCACCCGCGGCAAAAAGGTACATTCTCT
ACAGCGGGCTTGACGTCGACACCAGCCAGGTGCTGGGCGAGTACAAAGGG
CGCAAGTTTTTACCATTTGTACCTTCCGAAACCCCGCCGACTTGGCGTAT
TCCCGCCCGCGTTTCCGGGGAGATCGTCTGCATGTACAAGGAGGAACAGG
TCCAGTCCGATACCGTAGAGTTCACCGTGCTTCTGACTGACTACGATCCC
CGTTGTGGCGTTCCTCCGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig89:345325..347295-

>mRNA_Ecto-sp6_S_contig89.17939.1 ID=mRNA_Ecto-sp6_S_contig89.17939.1|Name=mRNA_Ecto-sp6_S_contig89.17939.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=840bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:345325..347295- (Ectocarpus species6 EcLAC_371)
ATGGTGCGAACGTGTGCGTCCCCCAAGGCGACGGGTGGCTTCGCTGGTCC
GGGATCCCTCATCGACGGAGGAGTGATGGGTGGGTTCGGCGTTACCGAAG
TGGACATTCAACCATGGGGCGAGATCGAGCTCACCGACGCGAACCTCGGA
TCCGTCTACGTGTCCGGCAAGTTCGTCCGCCACGACAGTGCGGCGCTGCC
CTTCTCGTCGGCCGTCTTCTTCTACATCGAGAACGCAGACCAGCCGGACG
ACTTTGCACGCGGCAGCTTCAAAATACGAGGCGCATCCGGAGATTTCTCG
ATGGTCGTGATGGACGTCCCTCCTGGAAACAGCAGGCTATTCCTCAGCTT
TGTCATCGAGGATCGCGAGGAGGCGCTGAACGTCGCGGCGGAGGTGGTGC
CGGCAAAGTCAATACTCTCGCTTGACATCTCCAACATGGGATGCGTCCCG
TCTTTGACCATCACTCACGAGTGGATTGGTGGCAGTTTTGCTCCCTATGA
GATCACTGAACCCGACCTAACCACCATCAACTCCGGCCATGGGGACGTTT
CCGGGGGCGTCGGAGTCTTCCAGGACAATTGGGCAGGAAGCTCACCCGCG
GCAAAAAGGTACATTCTCTACAGCGGGCTTGACGTCGACACCAGCCAGGT
GCTGGGCGAGTACAAAGGGCGCAAGTTTTTACCATTTGTACCTTCCGAAA
CCCCGCCGACTTGGCGTATTCCCGCCCGCGTTTCCGGGGAGATCGTCTGC
ATGTACAAGGAGGAACAGGTCCAGTCCGATACCGTAGAGTTCACCGTGCT
TCTGACTGACTACGATCCCCGTTGTGGCGTTCCTCCGTGA
back to top