mRNA_Ecto-sp6_S_contig89.17936.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig89.17936.1
Unique NamemRNA_Ecto-sp6_S_contig89.17936.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig89.17936.1 vs. uniprot
Match: D8LKF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF1_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 8.270e-28
Identity = 51/59 (86.44%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 FMRKAKTRKTPRRMAWLTRPSLLTMLWLTSLWPLPPSRQTDMHPNLGTHDDLSTKATTV 177
             MRKAKTR+TPRRMAW TR SLLTMLWLTSLWPL PS QTDMHPNL THDDLSTKATT+
Sbjct:    4 IMRKAKTRETPRRMAWFTRTSLLTMLWLTSLWPLSPSLQTDMHPNLDTHDDLSTKATTI 62
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig89.17936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKF1_ECTSI8.270e-2886.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig89contigEcto-sp6_S_contig89:299632..300871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size212
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_002730.1
Cds size207
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350509.8083751-UTR-Ecto-sp6_S_contig89:299631..2996341682350509.8083751-UTR-Ecto-sp6_S_contig89:299631..299634Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig89 299632..299634 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350509.8171153-CDS-Ecto-sp6_S_contig89:299634..2997481682350509.8171153-CDS-Ecto-sp6_S_contig89:299634..299748Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 299635..299748 +
1682350509.82574-CDS-Ecto-sp6_S_contig89:300778..3008711682350509.82574-CDS-Ecto-sp6_S_contig89:300778..300871Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 300779..300871 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig89.17936.1prot_Ecto-sp6_S_contig89.17936.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig89 299635..300871 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig89.17936.1

>prot_Ecto-sp6_S_contig89.17936.1 ID=prot_Ecto-sp6_S_contig89.17936.1|Name=mRNA_Ecto-sp6_S_contig89.17936.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=69bp
MRKAKTRKTPRRMAWLTRPSLLTMLWLTSLWPLPPSRQTDMHPNLGTHDD
LSTKATTVIERLAVATEVR
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mRNA from alignment at Ecto-sp6_S_contig89:299632..300871+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig89.17936.1 ID=mRNA_Ecto-sp6_S_contig89.17936.1|Name=mRNA_Ecto-sp6_S_contig89.17936.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1240bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:299632..300871+ (Ectocarpus species6 EcLAC_371)
TTCATGCGGAAGGCCAAGACGCGGAAAACGCCGAGGAGGATGGCCTGGTT
AACTCGACCAAGTCTTCTCACAATGCTTTGGCTCACTTCTCTCTGGCCTT
TGCCGCCAAGCCGACAGGTGAGTGAGCCATTTCTCGGACTCTTTGAGTAC
GAGACCCAACTTTAGTGTCCTGCGTACTCTTGAGATTGATGTTGAGGAGA
AGGAAGGTGACTGCCTCCCGTGGCAAGTGTGTCTGTCTCTTGTAGGTTCC
CCGGGCTGGACGAGACCGGCAATCTCAGCGGGAATGGCGTAGAGCAAGCT
CTTGCAGGAGGAAGGCGCTTTGACCCGCTCCTTCATCGAGACGTGAAAAC
CGCCATCATGACGACAGACAGCAGAAGGCGGTCCCGGACGAATCTCATGC
CACATAACCTACTGCTGCCGTCTGGGTTCTCGTCCCTTCGCGTCCGCGAT
CGGTCGTTCAATGCTTCTTCATCGTTCACGGATGGCGCGCAATAGATCAA
TTTTCGTGCACCTGAAGGCCCATTACATGTACATGCAGACTATGCCCCCA
GTGCTGCGGTGGCGCACGCAGGCGGTCACTTATCACAACGAGCAAGCCAA
ATATGGAAGGGGGTGGTTTTCGCTGACATGCAATAACTTCAACTACGCGT
GCATCCTATTCTGATTATGCCGGCGGCAGCGGGTTGAAGACGATATTGAA
TACATACAAGGCCCCGTAGCAATCAACACGAAACACAACAACAATCGAGC
ATGCAGAGAAAGCACTATTGAACACTCCAAAGGGTGGAGAGGCACGACAT
TGTGGTGGCCGTGCTATGTAGGCATGCTTTAGTCAATCGAGAAGCGGGAG
ATGCGCATGAAATGTGAATGTGCCGACTTTCACTTGGAAAATCATCCTGT
TGCCGATTACCCGATGTATACAGTGAATTTTCAGGCTGATTTCACCGGCG
TGTCGTTTTGGTGACCGAGCAAAGACACACACAGCCCTTTCGCGTATTGC
GAGCCGCGGTCGGAACCGACCTACCGTTTCCATTCCTCTTGGAGATGAGC
TACATCGATTGCCAGTGGGAAACGTTTCATCCTCTAAACTACACAGTCAA
CTATGGACATGCGTCCACATTGATTGCTTCTTCAACCTCTCCCACAGACG
GATATGCATCCAAACCTTGGCACACACGACGATTTATCGACAAAAGCCAC
AACGGTCATAGAACGGCTGGCTGTGGCGACCGAAGTCCGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig89:299632..300871+

>mRNA_Ecto-sp6_S_contig89.17936.1 ID=mRNA_Ecto-sp6_S_contig89.17936.1|Name=mRNA_Ecto-sp6_S_contig89.17936.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:299632..300871+ (Ectocarpus species6 EcLAC_371)
ATGCGGAAGGCCAAGACGCGGAAAACGCCGAGGAGGATGGCCTGGTTAAC
TCGACCAAGTCTTCTCACAATGCTTTGGCTCACTTCTCTCTGGCCTTTGC
CGCCAAGCCGACAGACGGATATGCATCCAAACCTTGGCACACACGACGAT
TTATCGACAAAAGCCACAACGGTCATAGAACGGCTGGCTGTGGCGACCGA
AGTCCGG
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