mRNA_Ecto-sp6_S_contig89.17927.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig89.17927.1
Unique NamemRNA_Ecto-sp6_S_contig89.17927.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig89.17927.1 vs. uniprot
Match: D8LKF0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF0_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 3.580e-30
Identity = 57/74 (77.03%), Postives = 60/74 (81.08%), Query Frame = -2
Query:  141 GVPVHLAEKTGRWRVGRGWMCTLGRSPRVAGRWRVQ----SHGKAVNVASLQVRDSSGVMSAEDGHILWSSSSS 350
            GVPVHLAEK GRWRVGRGWMCTLGRSPRVAG W+V     SHGKA+  ASLQ+ D S VMS EDGHILWSSS S
Sbjct:  153 GVPVHLAEKNGRWRVGRGWMCTLGRSPRVAGGWKVHLPWDSHGKALKAASLQLGDGSVVMSTEDGHILWSSSPS 226          
BLAST of mRNA_Ecto-sp6_S_contig89.17927.1 vs. uniprot
Match: A0A6H5JC81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC81_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 6.080e-30
Identity = 57/73 (78.08%), Postives = 60/73 (82.19%), Query Frame = -2
Query:  141 VPVHLAEKTGRWRVGRGWMCTLGRSPRVAGRWRVQ----SHGKAVNVASLQVRDSSGVMSAEDGHILWSSSSS 347
            VPVHLA K GRWRVGRGWMCTLGRSPRVAG WRV     SHGKA+  ASLQ+RD S VM+ EDGHILWSSSSS
Sbjct:  207 VPVHLAVKNGRWRVGRGWMCTLGRSPRVAGGWRVHLPWDSHGKALKAASLQLRDGSAVMATEDGHILWSSSSS 279          
BLAST of mRNA_Ecto-sp6_S_contig89.17927.1 vs. uniprot
Match: D8LK83_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK83_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 6.680e-29
Identity = 56/74 (75.68%), Postives = 59/74 (79.73%), Query Frame = -2
Query:  141 GVPVHLAEKTGRWRVGRGWMCTLGRSPRVAGRWRVQ----SHGKAVNVASLQVRDSSGVMSAEDGHILWSSSSS 350
            GVPVHLA K GRWRVGRGWMCTLGRSPRVAG WRV     SHGKA+  ASLQ+ D S VM+ EDGHILWSSS S
Sbjct:  206 GVPVHLAVKNGRWRVGRGWMCTLGRSPRVAGGWRVHLPWDSHGKALKAASLQLCDGSAVMATEDGHILWSSSPS 279          
BLAST of mRNA_Ecto-sp6_S_contig89.17927.1 vs. uniprot
Match: A0A6H5KHD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD7_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.690e-28
Identity = 52/74 (70.27%), Postives = 58/74 (78.38%), Query Frame = -2
Query:  141 GVPVHLAEKTGRWRVGRGWMCTLGRSPRVAGRWRVQ----SHGKAVNVASLQVRDSSGVMSAEDGHILWSSSSS 350
            GVPVHLA+K GRWRVGRGWMCTLG+SPR  G WRV     SHGKA+  ASLQ+R+ S VM+ ED HILWSSS S
Sbjct:    2 GVPVHLAKKNGRWRVGRGWMCTLGQSPRPVGGWRVHLPWDSHGKALKAASLQLRNGSVVMATEDDHILWSSSPS 75          
BLAST of mRNA_Ecto-sp6_S_contig89.17927.1 vs. uniprot
Match: D8LKF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF2_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 3.100e-28
Identity = 57/74 (77.03%), Postives = 60/74 (81.08%), Query Frame = -2
Query:  141 GVPVHLAEKTGRWRVGRGWMCTLGRSPRVAGRWRVQ----SHGKAVNVASLQVRDSSGVMSAEDGHILWSSSSS 350
            G+PVHLA K GRWRVGRGWMCTLGRSPRVAG WRV     SHGKA+  ASLQVRD S VM+ EDGHILWSSS S
Sbjct:  792 GIPVHLAVKNGRWRVGRGWMCTLGRSPRVAGGWRVHLPWDSHGKALKAASLQVRDGSVVMATEDGHILWSSSPS 865          
BLAST of mRNA_Ecto-sp6_S_contig89.17927.1 vs. uniprot
Match: A0A6H5JM55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM55_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 4.900e-27
Identity = 56/76 (73.68%), Postives = 61/76 (80.26%), Query Frame = -2
Query:  141 GVPVHLAEKTGRWRVGRGWMCTLGRSPRVAGRWRVQ----SHGKAVNVASLQVRDSSGVMSAEDGH--ILWSSSSS 350
            GVPVHLA+K GRWRVGRGWMCTLGRSP+VA  WRVQ    SHGK +  ASLQ+RDSS VM+ EDGH  ILWSSS S
Sbjct:   71 GVPVHLAKKNGRWRVGRGWMCTLGRSPKVARGWRVQLPWDSHGKTLKAASLQLRDSSVVMTTEDGHDHILWSSSRS 146          
BLAST of mRNA_Ecto-sp6_S_contig89.17927.1 vs. uniprot
Match: A0A6H5KV41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV41_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.890e-25
Identity = 53/74 (71.62%), Postives = 58/74 (78.38%), Query Frame = -2
Query:  141 GVPVHLAEKTGRWRVGRGWMCTLGRSPRVAGRWRVQ----SHGKAVNVASLQVRDSSGVMSAEDGHILWSSSSS 350
            GVPVHLA K GRWRVGRGWMCTLG+SPR  G WRV     SHGKA+  ASLQ+R+ S VM+ EDGHILWSSS S
Sbjct:  542 GVPVHLAVKNGRWRVGRGWMCTLGQSPRPVGGWRVHLPWDSHGKALKAASLQLRNGSVVMATEDGHILWSSSPS 615          
BLAST of mRNA_Ecto-sp6_S_contig89.17927.1 vs. uniprot
Match: D8LK90_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK90_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.510e-20
Identity = 46/74 (62.16%), Postives = 51/74 (68.92%), Query Frame = -2
Query:  141 GVPVHLAEKTGRWRVGRGWMCTLGRSPRVAGRWRVQ----SHGKAVNVASLQVRDSSGVMSAEDGHILWSSSSS 350
            GVPVHL  K GRWRVGRGWMCTLGR P VAG WRV     SHGK +  A LQ+ D S VM+  +G + WSSS S
Sbjct:  242 GVPVHLVVKNGRWRVGRGWMCTLGRIPSVAGGWRVHLPWDSHGKTLKAALLQLCDGSVVMATGEGDVAWSSSPS 315          
BLAST of mRNA_Ecto-sp6_S_contig89.17927.1 vs. uniprot
Match: D8LKF8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF8_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 6.930e-17
Identity = 40/52 (76.92%), Postives = 42/52 (80.77%), Query Frame = -2
Query:  207 GVPVHLAEKTGRWRVGRGWMCTLGRSPRVAGRWRVQ----SHGKAVNVASLQ 350
            G+PVHLA K GRWRVGRGWMCTLGRSPRVAG WRV     SHGKA+  ASLQ
Sbjct: 1838 GIPVHLAVKNGRWRVGRGWMCTLGRSPRVAGGWRVHLPWDSHGKALKAASLQ 1889          
BLAST of mRNA_Ecto-sp6_S_contig89.17927.1 vs. uniprot
Match: D8LQD9_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQD9_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.050e-13
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = -2
Query:  144 VPVHLAEKTGRWRVGRGWMCTLGRSPRVAGRWRVQ----SHGKAVNVASLQVRDSSGVMSAEDGHILWSSSS 347
            +PVHL  K GRWRVGRG +CT+G+SP+  G WR      + G+A+  A L++RD + V+    G ILWSS+S
Sbjct:  384 IPVHLYVKNGRWRVGRGRLCTMGQSPKPHGSWRANLPWDAKGRAIKTAGLELRDGALVLVTPQGEILWSSAS 455          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig89.17927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LKF0_ECTSI3.580e-3077.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JC81_9PHAE6.080e-3078.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK83_ECTSI6.680e-2975.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHD7_9PHAE1.690e-2870.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKF2_ECTSI3.100e-2877.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM55_9PHAE4.900e-2773.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KV41_9PHAE1.890e-2571.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK90_ECTSI1.510e-2062.16PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
D8LKF8_ECTSI6.930e-1776.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LQD9_ECTSI1.050e-1348.61PH domain-containing protein n=1 Tax=Ectocarpus si... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig89contigEcto-sp6_S_contig89:190949..191311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size353
Hectar predicted targeting categoryother localisation
Exons2
Cds size336
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350506.6376579-UTR-Ecto-sp6_S_contig89:190948..1909631682350506.6376579-UTR-Ecto-sp6_S_contig89:190948..190963Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig89 190949..190963 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350506.6466238-CDS-Ecto-sp6_S_contig89:190963..1911901682350506.6466238-CDS-Ecto-sp6_S_contig89:190963..191190Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 190964..191190 +
1682350506.6545208-CDS-Ecto-sp6_S_contig89:191202..1913111682350506.6545208-CDS-Ecto-sp6_S_contig89:191202..191311Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 191203..191311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig89.17927.1prot_Ecto-sp6_S_contig89.17927.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig89 190964..191311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig89.17927.1

>prot_Ecto-sp6_S_contig89.17927.1 ID=prot_Ecto-sp6_S_contig89.17927.1|Name=mRNA_Ecto-sp6_S_contig89.17927.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=112bp
MVGEGHERWPGHGWASPSDWRLKLYVSGQGGGVVLHYLYSFLLDEELHRM
WPSSADITPLLSRTCNDATFTAFPWDCTLHRPATLGLRPKVHIHPRPTLH
LPVFSARWTGTP
back to top

mRNA from alignment at Ecto-sp6_S_contig89:190949..191311+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig89.17927.1 ID=mRNA_Ecto-sp6_S_contig89.17927.1|Name=mRNA_Ecto-sp6_S_contig89.17927.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=363bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:190949..191311+ (Ectocarpus species6 EcLAC_371)
GTGTGCTCTGGAGGCATGGTGGGAGAGGGCCACGAACGGTGGCCAGGACA TGGATGGGCGTCCCCGTCCGATTGGCGCCTCAAATTGTACGTGAGTGGCC AAGGCGGTGGGGTGGTATTACACTACCTCTATAGTTTTCTGCTTGACGAA GAGCTCCACAGGATGTGGCCGTCCTCCGCGGACATAACCCCGCTGCTGTC CCGAACCTGCAATGACGCCACATTCACGGCCTTCCCGTGGGAGTCCCACG GCAGTTGCACCCTCCACCGTCCCGCCACCCTGGGGCTTCGTCCCAAGGTG CACATCCATCCCCGGCCGACTCTCCATCTGCCGGTCTTCTCGGCCAGGTG GACGGGGACGCCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig89:190949..191311+

>mRNA_Ecto-sp6_S_contig89.17927.1 ID=mRNA_Ecto-sp6_S_contig89.17927.1|Name=mRNA_Ecto-sp6_S_contig89.17927.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:190949..191311+ (Ectocarpus species6 EcLAC_371)
ATGGTGGGAGAGGGCCACGAACGGTGGCCAGGACATGGATGGGCGTCCCC
GTCCGATTGGCGCCTCAAATTGTACGTGAGTGGCCAAGGCGGTGGGGTGG
TATTACACTACCTCTATAGTTTTCTGCTTGACGAAGAGCTCCACAGGATG
TGGCCGTCCTCCGCGGACATAACCCCGCTGCTGTCCCGAACCTGCAATGA
CGCCACATTCACGGCCTTCCCGTGGGATTGCACCCTCCACCGTCCCGCCA
CCCTGGGGCTTCGTCCCAAGGTGCACATCCATCCCCGGCCGACTCTCCAT
CTGCCGGTCTTCTCGGCCAGGTGGACGGGGACGCCC
back to top