mRNA_Ecto-sp6_S_contig89.17927.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig89.17927.1 vs. uniprot
Match: D8LKF0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF0_ECTSI) HSP 1 Score: 116 bits (291), Expect = 3.580e-30 Identity = 57/74 (77.03%), Postives = 60/74 (81.08%), Query Frame = -2
Query: 141 GVPVHLAEKTGRWRVGRGWMCTLGRSPRVAGRWRVQ----SHGKAVNVASLQVRDSSGVMSAEDGHILWSSSSS 350
GVPVHLAEK GRWRVGRGWMCTLGRSPRVAG W+V SHGKA+ ASLQ+ D S VMS EDGHILWSSS S
Sbjct: 153 GVPVHLAEKNGRWRVGRGWMCTLGRSPRVAGGWKVHLPWDSHGKALKAASLQLGDGSVVMSTEDGHILWSSSPS 226
BLAST of mRNA_Ecto-sp6_S_contig89.17927.1 vs. uniprot
Match: A0A6H5JC81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC81_9PHAE) HSP 1 Score: 117 bits (293), Expect = 6.080e-30 Identity = 57/73 (78.08%), Postives = 60/73 (82.19%), Query Frame = -2
Query: 141 VPVHLAEKTGRWRVGRGWMCTLGRSPRVAGRWRVQ----SHGKAVNVASLQVRDSSGVMSAEDGHILWSSSSS 347
VPVHLA K GRWRVGRGWMCTLGRSPRVAG WRV SHGKA+ ASLQ+RD S VM+ EDGHILWSSSSS
Sbjct: 207 VPVHLAVKNGRWRVGRGWMCTLGRSPRVAGGWRVHLPWDSHGKALKAASLQLRDGSAVMATEDGHILWSSSSS 279
BLAST of mRNA_Ecto-sp6_S_contig89.17927.1 vs. uniprot
Match: D8LK83_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK83_ECTSI) HSP 1 Score: 114 bits (286), Expect = 6.680e-29 Identity = 56/74 (75.68%), Postives = 59/74 (79.73%), Query Frame = -2
Query: 141 GVPVHLAEKTGRWRVGRGWMCTLGRSPRVAGRWRVQ----SHGKAVNVASLQVRDSSGVMSAEDGHILWSSSSS 350
GVPVHLA K GRWRVGRGWMCTLGRSPRVAG WRV SHGKA+ ASLQ+ D S VM+ EDGHILWSSS S
Sbjct: 206 GVPVHLAVKNGRWRVGRGWMCTLGRSPRVAGGWRVHLPWDSHGKALKAASLQLCDGSAVMATEDGHILWSSSPS 279
BLAST of mRNA_Ecto-sp6_S_contig89.17927.1 vs. uniprot
Match: A0A6H5KHD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD7_9PHAE) HSP 1 Score: 107 bits (268), Expect = 1.690e-28 Identity = 52/74 (70.27%), Postives = 58/74 (78.38%), Query Frame = -2
Query: 141 GVPVHLAEKTGRWRVGRGWMCTLGRSPRVAGRWRVQ----SHGKAVNVASLQVRDSSGVMSAEDGHILWSSSSS 350
GVPVHLA+K GRWRVGRGWMCTLG+SPR G WRV SHGKA+ ASLQ+R+ S VM+ ED HILWSSS S
Sbjct: 2 GVPVHLAKKNGRWRVGRGWMCTLGQSPRPVGGWRVHLPWDSHGKALKAASLQLRNGSVVMATEDDHILWSSSPS 75
BLAST of mRNA_Ecto-sp6_S_contig89.17927.1 vs. uniprot
Match: D8LKF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF2_ECTSI) HSP 1 Score: 117 bits (293), Expect = 3.100e-28 Identity = 57/74 (77.03%), Postives = 60/74 (81.08%), Query Frame = -2
Query: 141 GVPVHLAEKTGRWRVGRGWMCTLGRSPRVAGRWRVQ----SHGKAVNVASLQVRDSSGVMSAEDGHILWSSSSS 350
G+PVHLA K GRWRVGRGWMCTLGRSPRVAG WRV SHGKA+ ASLQVRD S VM+ EDGHILWSSS S
Sbjct: 792 GIPVHLAVKNGRWRVGRGWMCTLGRSPRVAGGWRVHLPWDSHGKALKAASLQVRDGSVVMATEDGHILWSSSPS 865
BLAST of mRNA_Ecto-sp6_S_contig89.17927.1 vs. uniprot
Match: A0A6H5JM55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM55_9PHAE) HSP 1 Score: 110 bits (275), Expect = 4.900e-27 Identity = 56/76 (73.68%), Postives = 61/76 (80.26%), Query Frame = -2
Query: 141 GVPVHLAEKTGRWRVGRGWMCTLGRSPRVAGRWRVQ----SHGKAVNVASLQVRDSSGVMSAEDGH--ILWSSSSS 350
GVPVHLA+K GRWRVGRGWMCTLGRSP+VA WRVQ SHGK + ASLQ+RDSS VM+ EDGH ILWSSS S
Sbjct: 71 GVPVHLAKKNGRWRVGRGWMCTLGRSPKVARGWRVQLPWDSHGKTLKAASLQLRDSSVVMTTEDGHDHILWSSSRS 146
BLAST of mRNA_Ecto-sp6_S_contig89.17927.1 vs. uniprot
Match: A0A6H5KV41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV41_9PHAE) HSP 1 Score: 109 bits (272), Expect = 1.890e-25 Identity = 53/74 (71.62%), Postives = 58/74 (78.38%), Query Frame = -2
Query: 141 GVPVHLAEKTGRWRVGRGWMCTLGRSPRVAGRWRVQ----SHGKAVNVASLQVRDSSGVMSAEDGHILWSSSSS 350
GVPVHLA K GRWRVGRGWMCTLG+SPR G WRV SHGKA+ ASLQ+R+ S VM+ EDGHILWSSS S
Sbjct: 542 GVPVHLAVKNGRWRVGRGWMCTLGQSPRPVGGWRVHLPWDSHGKALKAASLQLRNGSVVMATEDGHILWSSSPS 615
BLAST of mRNA_Ecto-sp6_S_contig89.17927.1 vs. uniprot
Match: D8LK90_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK90_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 1.510e-20 Identity = 46/74 (62.16%), Postives = 51/74 (68.92%), Query Frame = -2
Query: 141 GVPVHLAEKTGRWRVGRGWMCTLGRSPRVAGRWRVQ----SHGKAVNVASLQVRDSSGVMSAEDGHILWSSSSS 350
GVPVHL K GRWRVGRGWMCTLGR P VAG WRV SHGK + A LQ+ D S VM+ +G + WSSS S
Sbjct: 242 GVPVHLVVKNGRWRVGRGWMCTLGRIPSVAGGWRVHLPWDSHGKTLKAALLQLCDGSVVMATGEGDVAWSSSPS 315
BLAST of mRNA_Ecto-sp6_S_contig89.17927.1 vs. uniprot
Match: D8LKF8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF8_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 6.930e-17 Identity = 40/52 (76.92%), Postives = 42/52 (80.77%), Query Frame = -2
Query: 207 GVPVHLAEKTGRWRVGRGWMCTLGRSPRVAGRWRVQ----SHGKAVNVASLQ 350
G+PVHLA K GRWRVGRGWMCTLGRSPRVAG WRV SHGKA+ ASLQ
Sbjct: 1838 GIPVHLAVKNGRWRVGRGWMCTLGRSPRVAGGWRVHLPWDSHGKALKAASLQ 1889
BLAST of mRNA_Ecto-sp6_S_contig89.17927.1 vs. uniprot
Match: D8LQD9_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQD9_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 1.050e-13 Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = -2
Query: 144 VPVHLAEKTGRWRVGRGWMCTLGRSPRVAGRWRVQ----SHGKAVNVASLQVRDSSGVMSAEDGHILWSSSS 347
+PVHL K GRWRVGRG +CT+G+SP+ G WR + G+A+ A L++RD + V+ G ILWSS+S
Sbjct: 384 IPVHLYVKNGRWRVGRGRLCTMGQSPKPHGSWRANLPWDAKGRAIKTAGLELRDGALVLVTPQGEILWSSAS 455 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig89.17927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig89.17927.1 >prot_Ecto-sp6_S_contig89.17927.1 ID=prot_Ecto-sp6_S_contig89.17927.1|Name=mRNA_Ecto-sp6_S_contig89.17927.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=112bp MVGEGHERWPGHGWASPSDWRLKLYVSGQGGGVVLHYLYSFLLDEELHRMback to top mRNA from alignment at Ecto-sp6_S_contig89:190949..191311+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig89.17927.1 ID=mRNA_Ecto-sp6_S_contig89.17927.1|Name=mRNA_Ecto-sp6_S_contig89.17927.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=363bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:190949..191311+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig89:190949..191311+ >mRNA_Ecto-sp6_S_contig89.17927.1 ID=mRNA_Ecto-sp6_S_contig89.17927.1|Name=mRNA_Ecto-sp6_S_contig89.17927.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:190949..191311+ (Ectocarpus species6 EcLAC_371)back to top |