mRNA_Ecto-sp6_S_contig89.17924.1 (mRNA) Ectocarpus species6 EcLAC_371
|
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig89.17924.1 vs. uniprot
Match: D8LKG0_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG0_ECTSI) HSP 1 Score: 801 bits (2070), Expect = 1.650e-289 Identity = 426/562 (75.80%), Postives = 431/562 (76.69%), Query Frame = 1
Query: 1 MQYEDSKGDLWTEEQDDDGYVYFVNANTMASETAWELPPSAREIEAPYAADASASSALVPLQDSSASWTEVFDESTNSTYYFNTLTQESSWDLGTDERLASGIYHPSGGDDDALIGPYSSSQTLEVESSISSSWRDEVLAGFQVPQEVSEAVGRAGSAHVWPRTVDGRPSRLERWDVLKARSEYISSTQASDPYREHFSTGEAWRLEHPEFEPKLCFYAFDTAVEHVERYWVEEAEAPFRCRLQRDGLKFSRDIAKWEPRVPAKKNDNDKGNSGVGNPGGDLXXXXXXXXXXXXXXXXXXXXXXXXXXD-----GAGFFAFPLVVHNSHAHHVDWTSGPDRYQITQDSEPEWGWTRLFTFFAYAASKYHVLETTKAPLAQKASLSKTKLLYIVKGNFLTPEPGWKCVLAFFAFNDMVPGSNRYYIEEKDEPHLRTRIGMEASCRWDARHSFAAFDVPVPGSCALDVHYTIRSTDSLNPYPEQCRISLKARLKCYLGGRGADIFTLKPGRCSLDPWGAWEQKFRFYAFPAEQVLLSPELDSDTQDVLSGSQSRSAGDESGPHG 1671
MQYEDSKGDLW EEQDDDG VYFVNA+TM ESSWDLGTDERLASGIYHPSGGDDDALIGPYSSSQTLE ESSISSSWRDEVL GFQVPQEVSEAVGRAGSAH+WPRTVDGRPSRLERWDVLKA SDPYREHFSTGEAWRLEHPEFEPKLCFYAFDTAVEHVERYWVEEAEAPFRCRLQRDGLKFSRDIA WE R PAKKNDNDKGNSGVG+PGGDL XXXXXXXXXX GAGFFAFPLVVHNSHAHHVDWTSGPDRYQITQDSEPEWGWTRLFTFFAYAASKYHVLETT+APLAQK IVKGNFLTPEPGWKCVLAFFAFNDMVPGSNRYYIEEKDEPHLRTRIGMEASCRWDARHSFAAFDVPVPGSCALDVHYTIRSTDSLNPYPEQCRISLK DPWG+WEQKFRFYAFPAEQVLLSPELDSDTQDVLSGSQSRSAGDESGPHG
Sbjct: 1 MQYEDSKGDLWVEEQDDDGDVYFVNADTM----------------------------------------------------------ESSWDLGTDERLASGIYHPSGGDDDALIGPYSSSQTLEAESSISSSWRDEVLVGFQVPQEVSEAVGRAGSAHIWPRTVDGRPSRLERWDVLKA----------SDPYREHFSTGEAWRLEHPEFEPKLCFYAFDTAVEHVERYWVEEAEAPFRCRLQRDGLKFSRDIATWEARAPAKKNDNDKGNSGVGSPGGDLDGDEHWGGEGVGGDGRXXXXXXXXXXXXXXXXGAGFFAFPLVVHNSHAHHVDWTSGPDRYQITQDSEPEWGWTRLFTFFAYAASKYHVLETTQAPLAQK----------IVKGNFLTPEPGWKCVLAFFAFNDMVPGSNRYYIEEKDEPHLRTRIGMEASCRWDARHSFAAFDVPVPGSCALDVHYTIRSTDSLNPYPEQCRISLK------------------------DPWGSWEQKFRFYAFPAEQVLLSPELDSDTQDVLSGSQSRSAGDESGPHG 460
BLAST of mRNA_Ecto-sp6_S_contig89.17924.1 vs. uniprot
Match: A0A7S3Y5K5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5K5_HETAK) HSP 1 Score: 188 bits (478), Expect = 1.150e-51 Identity = 125/361 (34.63%), Postives = 166/361 (45.98%), Query Frame = 1
Query: 511 RLERWDVLKARSEYISSTQASDPYREHFSTGEAWRLEHPEFEPKLCFYAFDTAVEHVERYWVEEAEAPFRCRLQRDGLKFSRDIAKWEPRVPAKKNDNDKGNSGVGNPGGDLXXXXXXXXXXXXXXXXXXXXXXXXXXDGAGFFAFPLVVHNSHAHHVDWTSGPDRYQITQDSEPEWGWTRLFTFFAYAASKYHVLETTKAPLAQKASLSKTKLLYIVKGNFLTPEPGWKCVLAFFAFNDMVPGSNRYYIEEKDEPHLRTRIGMEASCRWDARHSFAAFDVPVP--GSCALDVHYTIRSTDSLNPYPEQCRISLKARLKCYLGGRGADIFTLKPGRCSLDPWGAWEQKFRFYAFPAEQVLL 1587
+LER +VL+ S+ +PYR+ F+ EA ++ F FYAF AV H + VE AP R R +R + F RDI KW +KK DK F+A+P ++ HVDW+SGPDRY I+QD P GW R F F+AY ASKYHVLE K A + IVKG+++ EPGW+C F+ +D PG+N Y++++++EP RTRIG+E + W G+ + VHY IRSTDS + YP+Q RI+L P GAWE F FYAFPA V L
Sbjct: 23 KLERINVLEPLSQ-------PEPYRQRFTRQEADEVDWSTF---ATFYAFAEAVPHADPVAVEAHPAPRRHRARRPRITFPRDITKWNE---SKK---DK------------------------------------------FYAYPQTYQGTNEFHVDWSSGPDRYMISQDGLPRMGWKRQFQFYAYGASKYHVLE--KVLDMATARPGERPGYKIVKGHYIPAEPGWRCRFGFYGLDDPAPGANLYHVQDQEEPFYRTRIGLERATHWXXXXXXXXXXXXXXXHGTSKVSVHYMIRSTDSEDVYPDQHRITLGL------------------------PSGAWEHLFDFYAFPAPSVQL 299
BLAST of mRNA_Ecto-sp6_S_contig89.17924.1 vs. uniprot
Match: A0A836CAN8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAN8_9STRA) HSP 1 Score: 165 bits (418), Expect = 9.330e-45 Identity = 82/202 (40.59%), Postives = 114/202 (56.44%), Query Frame = 1
Query: 982 VDWTSGPDRYQITQDSEPEWGWTRLFTFFAYAASKYHVLETTKAPLAQKASLSKTKLLYIVKGNFLTPEPGWKCVLAFFAFNDMVPGSNRYYIEEKDEPHLRTRIGMEASCRWDARHSFAAFDVPVPGSCALDVHYTIRSTDSLNPYPEQCRISLKARLKCYLGGRGADIFTLKPGRCSLDPWGAWEQKFRFYAFPAEQVLL 1587
+DWTSGPDRY ++ EP WGWTR+FT A+A SKYH+LE P + IVKG + PE W+C AFFAF+ VPGS + +++ + EPH+R+R+ + S RW+ S F +P+P + +VHYT+RS +SL+ +PEQ RI +LG +P WE K FYA+P+ VLL
Sbjct: 1 MDWTSGPDRYCVSVGDEPSWGWTRVFTMHAFAVSKYHLLERLDPPSYR-----------IVKGTHIKPERDWRCCFAFFAFDGPVPGSTQLFVQMRGEPHIRSRVALTHSERWEDHLSMYVFCMPMPNTAQFNVHYTVRSAESLDAFPEQDRI--------HLG----------------EPRDRWELKLTFYAYPSPVVLL 167
BLAST of mRNA_Ecto-sp6_S_contig89.17924.1 vs. uniprot
Match: A0A7S2S6V9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S6V9_9STRA) HSP 1 Score: 138 bits (348), Expect = 6.250e-32 Identity = 119/460 (25.87%), Postives = 180/460 (39.13%), Query Frame = 1
Query: 238 YYFNTLTQESSWDLGTDERLASGIYHPSGGDDDALIGPYSSSQTL-EVESSISSSWRDEVLAGFQVPQEVSEAVGRAGSAHVWPRTVDGRPSRLERWDVLKARSEYISSTQASDPYREHF--STGEAWRLEHPEFEPKLCFYAFDTAVEHVERYWVEEAEAPFRCRLQRDGLKFS--RDIAKWEPRVPAKKNDNDKGNSGVGNPGGDLXXXXXXXXXXXXXXXXXXXXXXXXXXDGAGFFAFPLVVHNSHAHHVDWTSGPDRYQI-TQDSEPEWGWTRLFTFFAYAASKYHVLETTKAPLAQKASLSK---TKLLY-IVKGNFLTPEPGWKCVLAFFAFNDMVPGSNRYYIEEKDEPHLRTRIGMEASC--RWDARHSFAAFDVPVPGSCALDVHYTIRSTDSLNPYPEQCRISLKARLKCYLGGRGADIFTLKPGRCSLDPWGAWEQKFRFYAFPAEQV 1581
YY++T T E++W+L L +DA P + + ++ + + +W+ E++A F+V +V E G H++P P L R IS + DP R S G+ + P Y F + VE PF RL+ G RDI+ W+ P K GF+ +P +H + +DW+S PDRY+I T + E GW R F A+AASKYH+LE + + +AS+S +L Y I KGNF + GW+C+ AF+AF++ PG++RYY + K +P+ R+G E + W+ V Y + DS PEQ R+ D W W +K FYA+PA +
Sbjct: 86 YYYDTATGETAWELPPGAALVQ---------EDAGEEPVAPEASFTQLFGADAKAWKREIMASFEVAPQVPEIQSNEGKRHIFPHCDPVSP--LVR----------ISVFENLDPPRHKIAVSLGDVVDEGTDYWRPVQYLYVFACEMPDTIPLEVELRRDPFGNRLKFFGKSNPQPRDISNWKSYTPIPK----------------------------------------------GFYVYPAPMHGTSPFFLDWSSAPDRYKISTSIASSELGWLRCLRFEAFAASKYHILEGSFVDESMEASMSVGAIPRLSYRIHKGNFCPCDQGWRCIFAFYAFDNPGPGTSRYYCQHKVDPYYTIRVGKEPTYIHDWEDYAXXXXXXXXXXXXXXFSVDYVTQDVDSRTDTPEQSRVFFH------------------------DTWEPWVEKLHFYAYPAPSI 454
BLAST of mRNA_Ecto-sp6_S_contig89.17924.1 vs. uniprot
Match: A0A7S4E3X4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E3X4_9STRA) HSP 1 Score: 136 bits (342), Expect = 4.730e-31 Identity = 124/424 (29.25%), Postives = 169/424 (39.86%), Query Frame = 1
Query: 376 VESSISSSWRDEVLAGFQVPQEVSEAVGRAGSAHVWPRTVDGRPSRLERWDVLKARSEYISSTQASDPYREHFSTGEAWRLEHPEFEPKLCFYAFDTAVEHVE---------RYWVEEAEAPFRCRL--QRDGLKFSRDIAKWEPRVPAKKNDNDKGNSGVGNPGGDLXXXXXXXXXXXXXXXXXXXXXXXXXXDGAGFFAFPLVVHNSHAHHVDWTSGPDRYQITQDSEPEWGWTRLFTFFAYAASKYHVLETTKAPLAQKASLSKTKLLYIVKGNFLTPEPGWKCVLAFFAFNDMVPGSNRYYIEEKDEPHLRTRIGMEASCR---WDARH-SFAAFDVPVPGSCALDVHYTIRSTDSLNPYPEQCRISLKARLKCYLGGRGADIFTLKPGRCSLDPWGAWEQKFRFYAFPAEQVLLSPELD 1602
ES SWRD+VL ++VP S + H LE +L+ ++ T PYR S EA + + P L Y F EH E RY ++ AE P R RL +RD +RD EP A P G+ FFA P H+DWTS PDRY ++ + P W R F FFAY A+K+H+LE P + + S +V G+ W+C+ AFFAF+ VP +N+Y I++ + + R R+GM AS R WD F A+DVPVPG+ V Y +R D N EQ R+S+ + G W +KF FY +PA + L D
Sbjct: 136 AESEPPESWRDKVLEAWRVPPLWSTQMRSDTHKH------------LEDCTLLRVNAQ----TARDGPYRHRISIEEADDV----WAPHLYLYVFP---EHPEGSVAKGIARRYVLDRAEEPHRSRLRWERDAKPQTRDT---EPSWCA--------------PRGEFK----------------------------SFFALPEPQPGLSEFHIDWTSAPDRYMVSTEYRPAAAWLRCFRFFAYKATKFHLLERVW-PHGSELTTSYR----LVAGHECPVNAHWRCLFAFFAFDSCVPNANQYTIQQSVDGYDRLRVGMTASIRPGEWDPNDLKFYAYDVPVPGTAKFSVQYRVR--DGTNMECEQNRLSIDHAV------------------------GPWVEKFVFYGYPAPTIELEAPKD 460
BLAST of mRNA_Ecto-sp6_S_contig89.17924.1 vs. uniprot
Match: A0A7S3K3X8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3X8_9STRA) HSP 1 Score: 125 bits (314), Expect = 1.060e-27 Identity = 107/354 (30.23%), Postives = 150/354 (42.37%), Query Frame = 1
Query: 577 PYREHFSTGEAWRLEHPEFEPKLCFYAFDTAVEHVE----RYWVEEAEAPFRCRLQRDGLKFS--RDIAKWEPRVPAKKNDNDKGNSGVGNPGGDLXXXXXXXXXXXXXXXXXXXXXXXXXXDGAGFFAFPLVVHNSHAHHVDWTSGPDRYQITQ--DSEPEWGWTRLFTFFAYAASKYHVLETTKAPLAQKASLSKTKLLYIVKGNFLTPEPGWKCVLAFFAFNDMVPGSNRYYIEE--KDEPHLRTRIGME-ASCR-WDARHSFAAF--DVPVPGSCALDVHYTIRSTDSLNPYPEQCRISLKARLKCYLGGRGADIFTLKPGRCSLDPWGAWEQKFRFYAFPAEQVLLSPE 1596
PYRE F W ++ L Y F +E RY +E AE P R RL+ DG + RD +W+ + + +ND F+AFP N+ VDWTSGPDRY+I + +S PE GW R F FFAY A+KYH+L P S S I+ G+ + W+C AFFA ++ PG+N+Y+I++ + E + R RIGM A C WD F + D+P P + +V Y +R EQ R+++ ADI L P C W KF + +PA + L P+
Sbjct: 60 PYRERF----CWNDADDRWQASLYLYVFPHLPPGLEQCLRRYVLERAENPIRSRLRWDGQQKPQRRDATEWKA-LRSGRND---------------------------------------------FWAFPERTANAQELAVDWTSGPDRYRIIRHPESRPEAGWLRCFRFFAYPATKYHILYRDW-PSGAPVSTSYR----IISGHLCPVQRPWRCAFAFFALDEQAPGTNKYFIQKTPQSEYYPRIRIGMTPAQCGGWDPHDQFIFYAPDMPWPCTAKFNVQYKMRGGPDAEL--EQNRLAI------------ADI--LAPHACG----SLWTDKFAIFLYPAPTIDLEPD 338
BLAST of mRNA_Ecto-sp6_S_contig89.17924.1 vs. uniprot
Match: A0A7S2AWR6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AWR6_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 4.570e-12 Identity = 40/136 (29.41%), Postives = 60/136 (44.12%), Query Frame = 1
Query: 1186 EPGWKCVLAFFAFNDMVPGSNRYYIEEKDEPHLRTRIGMEASC--RWDARHSFAAFDVPVPGSCALDVHYTIRSTDSLNPYPEQCRISLKARLKCYLGGRGADIFTLKPGRCSLDPWGAWEQKFRFYAFPAEQVLL 1587
E GW+C+ AF+AF++M+PG+ RYY++E+ EPH R R+G E + VH+ +S ++ EQ RI + G D W W+QK FYA+ A +L
Sbjct: 3 EEGWRCLFAFYAFDEMIPGTTRYYVQEQFEPHQRIRVGQEPTYFHGXXXXXXXXXXXXXXXXXXXFSVHFLTQSPETRTAVAEQSRI--------FFG----------------DAWEPWQQKCNFYAYAAPTMLF 114 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig89.17924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig89.17924.1 >prot_Ecto-sp6_S_contig89.17924.1 ID=prot_Ecto-sp6_S_contig89.17924.1|Name=mRNA_Ecto-sp6_S_contig89.17924.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=558bp MQYEDSKGDLWTEEQDDDGYVYFVNANTMASETAWELPPSAREIEAPYAAback to top mRNA from alignment at Ecto-sp6_S_contig89:174707..180108- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig89.17924.1 ID=mRNA_Ecto-sp6_S_contig89.17924.1|Name=mRNA_Ecto-sp6_S_contig89.17924.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5402bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:174707..180108- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig89:174707..180108- >mRNA_Ecto-sp6_S_contig89.17924.1 ID=mRNA_Ecto-sp6_S_contig89.17924.1|Name=mRNA_Ecto-sp6_S_contig89.17924.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1674bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:174707..180108- (Ectocarpus species6 EcLAC_371)back to top |