mRNA_Ecto-sp6_S_contig89.17922.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig89.17922.1
Unique NamemRNA_Ecto-sp6_S_contig89.17922.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig89.17922.1 vs. uniprot
Match: D8LKG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG3_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 1.600e-101
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1 
Query:    1 MPEFHFMESDWGIHAKRGGSICTATSLACTVVGFIFWRWFGAVLSLAIGLLLATFEVPFVYKCFEPCRRLETILNDTLKFSIPAVRAVLYLCLAIVAFTSNLLNIVLGVLLLLTAILYAFAQIVGSAITDTTTVPSDAAPADGQTPFGTFT 453
            MPEFHFMESDWGIHAKRGGSICTATSLACTVVGFIFWRWFGAVLSLAIGLLLATFEVPFVYKCFEPCRRLETILNDTLKFSIPAVRAVLYLCLAIVAFTSNLLNIVLGVLLLLTAILYAFAQIVGSAITDTTTVPSDAAPADGQTPFGTFT
Sbjct:    1 MPEFHFMESDWGIHAKRGGSICTATSLACTVVGFIFWRWFGAVLSLAIGLLLATFEVPFVYKCFEPCRRLETILNDTLKFSIPAVRAVLYLCLAIVAFTSNLLNIVLGVLLLLTAILYAFAQIVGSAITDTTTVPSDAAPADGQTPFGTFT 151
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig89.17922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKG3_ECTSI1.600e-101100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig89contigEcto-sp6_S_contig89:163566..167028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size456
Hectar predicted targeting categorysignal anchor
Exons5
Ec32 ortholog descriptionTVP18/Calcium channel flower
Ec32 orthologEc-16_002860.1
Cds size456
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350508.5131829-CDS-Ecto-sp6_S_contig89:163565..1636551682350508.5131829-CDS-Ecto-sp6_S_contig89:163565..163655Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 163566..163655 -
1682350508.5225787-CDS-Ecto-sp6_S_contig89:164070..1641241682350508.5225787-CDS-Ecto-sp6_S_contig89:164070..164124Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 164071..164124 -
1682350508.532778-CDS-Ecto-sp6_S_contig89:164633..1647501682350508.532778-CDS-Ecto-sp6_S_contig89:164633..164750Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 164634..164750 -
1682350508.5426996-CDS-Ecto-sp6_S_contig89:165900..1660741682350508.5426996-CDS-Ecto-sp6_S_contig89:165900..166074Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 165901..166074 -
1682350508.5521307-CDS-Ecto-sp6_S_contig89:167007..1670281682350508.5521307-CDS-Ecto-sp6_S_contig89:167007..167028Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 167008..167028 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig89.17922.1prot_Ecto-sp6_S_contig89.17922.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig89 163566..167028 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig89.17922.1

>prot_Ecto-sp6_S_contig89.17922.1 ID=prot_Ecto-sp6_S_contig89.17922.1|Name=mRNA_Ecto-sp6_S_contig89.17922.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=152bp
MPEFHFMESDWGIHAKRGGSICTATSLACTVVGFIFWRWFGAVLSLAIGL
LLATFEVPFVYKCFEPCRRLETILNDTLKFSIPAVRAVLYLCLAIVAFTS
NLLNIVLGVLLLLTAILYAFAQIVGSAITDTTTVPSDAAPADGQTPFGTF
T*
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mRNA from alignment at Ecto-sp6_S_contig89:163566..167028-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig89.17922.1 ID=mRNA_Ecto-sp6_S_contig89.17922.1|Name=mRNA_Ecto-sp6_S_contig89.17922.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3463bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:163566..167028- (Ectocarpus species6 EcLAC_371)
ATGCCGGAATTCCACTTCATGGTGAGGGGGTGCCTGCCTTGCACGAACGT
GTTCTGGTTCGGTCGTTTGGTTTTCTCGTGGCGGCAAAAAGTGGCTGCCA
CGATATGAGAAAAGAAGCGCGTCCTGGTAGATACACAATCTGTGTAGCGC
AGCAGCAGTCTCGAGTCCGTTCCACATGCCAGTGCTGCAGGCACAAGTGG
CCTGGCACGCAAGCAGGTCTCATACAATTTAAATATTCCCGTGTGGTTGG
CTTCTTCTCGTCGTAAATGGTGGGAAGAGCACGACCCCATCGCTCGCCCG
CGCAATCGGCGAGAGTGAGTCTCTCCGCCACTGCCCGTTGAGCGTAGAGC
CAACCAGCGCCCTGCGGGCAGAGACAGCTGTAGCGGAGAGGGAAAGCGAT
CGGTGTGGTGTTGGTGGTGTGTTGTTGAACCTCTCCTGTTGAAGGAAGGA
GACAAGGCGACCCTCTCTCGTCGACAGCTCTCGTCGGGTCCCCGCAGAAC
ATTGTTCAATGTTCCCTACTATTTTTTCTTTGGAAAGGATTCTAGGTTTT
ACGGAGCACTCGTCTACCACCTACCGTGACCGCGTGATGATGTCCAACCG
TTGTGCTGCGTTTCTCGTTGTGTTGTTGTGCGACACTCAATTTCCGCACG
ATAAAGTCTCGTGTTTTGGCTGCTTCATGCCCACACGTTGCTGTTTACGC
TGCTGGCCCATTCTAACATTCCGTTCCGATTGTTGGTGCTTTTTTGCGAA
CCCTCAAGACCGCGATTTCCAACCCCTTTGCAAAGTATGCGCAGTACTGC
TGTTGCACAAAAGCATTTTGGATGGATCTGCATTAGTTTTTGCAGCAATG
TTTCTGTACCCGATCGGACGCAAGTCCTTCCCCGCGCGTGGCTGGTGCGC
CCAGGAGCCTCACTCGTTTTCTTTTTTCTTGATTTTTTTTGTTCCCTTTT
CCAGGAATCCGACTGGGGGATCCACGCCAAGCGAGGCGGGAGCATCTGCA
CCGCCACATCGCTGGCTTGCACGGTGGTCGGGTTCATCTTCTGGCGCTGG
TTCGGGGCCGTTCTTTCTCTCGCGATCGGCCTTCTCTTGGCCACGTTTGA
AGTGCCCTTCGTCTACAAATGTTTCGAGGTGATTTTTTTTGTTTTTGTTT
TTTCCTCCCGGAGTCACGCACTGTTTTTGTACGACCATCCTCGAAAGCAG
TTGTGTGCATCTCCCTCGTGGAAGCTGCTGTGGCTGGATGGCACACCACG
ATCAGAGGGGAGGCCGACAACAACACGGCGATCAAGCCACTGAGGCAGCG
GCATCCTCTGTACCACGGGGACCCTGTATGTTGTACCCCCTGTGGGGGGC
GGGCCTATTGCACAGCTTCAACTCCGGTTTCGCTTGTACGCACTCCTTAA
CAAATTGGCTGCATAGTAAACGCTTGAAGATGGCACTGCTTCAGAGCCAG
CGTGACGAAATTATCTGTTCACGATGTTCCCGGTGCATCCATAACGGATG
TATCGGTTTGGATCCTGCAATAATCGCCCTACTGGGGGGGGAGGGGGGTC
ATAGTCGTGCATGCCATATTGTAGTCGTTACATCATTGGCGTCGCATCCC
TCCAAAGTCGGGATGGAGCACGCCGGGTTTTCACGGGACCACGCTAGTAC
ATCACCAAGCGCGAAGCGACGTGAGGTACTCGGCGAGTCGCATGGGGGCG
GTAATTCGCCTAGTGAACGGGAGCAAGGGGAATGCGGGAGCTGTGCTTGA
CAGAGTACAGCAGTACCAAGCCTTGAGCACCGGTCTGACATGTCAAGTCT
GAGGACCATTGAGTGACTCCAGTAACACGAGGCCGAAGCGTCGTCTACGC
GTTTTGGGCCCAATCACACAAAGCGCTGCAGAGTCTTGCTGACAGGAACG
AGCCATGGGCACTGGATCAGCGCAAGTGGCCGTATCTCGTCGAAGACCAG
AGTGCAACAAGCGGCAGCATCCGCTTTCTTGCCTAACGTGATGACTCCCT
CTCTTGCCTTCCTCCCCACCTTTCTCCCTCTAGCGCCATGCTTTTCGGTA
CCCCAAGACGTGTCCTACCTGTTCCTCTTTGTTTACACTCCTGCTGCACG
CCGCCCTCGTTCCCGTCACCCCGTTTTGTACCCAAAGCGTCCGGCCCCGT
AGCCGTGCCGACGCTGGCGACTATCTTAAACGAGACCGGTAATACTTAAC
TTGACTGGCCCTCTTTGTTTGCGCTCCTGCTGTACGCCGCCCTCCCCGTG
CCCTACATCCAAAACGTGTGTCCCACAGCCGTGCCGACGTCTGGAGACGA
TCTTAAACGACACCCTGAAGTTCAGTATTCCGGCCGTTCGCGCGGTCCTG
TACTTGTGCCTCGCCATCGTCGCCTTCACATCAAATTTGCTGAACGTGAG
TCCTCAACACACACGTACTGTTGTCGTAAGGTTCTGTCTCTTTCTTGTAC
CTGGTGTGTGTAGAGTTTTCCTGTTGCCCCGTTTCTAACAGCGAAATCCG
GGAGAGATAGGGCGGGGGGGGGGGGGCATCTTTGAGCCGCATCGTTTTCT
TCTTCGTTGTTTTCCCTCAGCCCACGTCCGCCTGAATGCCCAAAACATAG
ACATACATGCACGACATGGCGCAAAGTCTCCGGTAGTTTTGTTTTTTGGG
GTGCGTGTCGACTCCAGTCAAAGGTAGGAAAATATTCATGCAAACCGTTT
TCACATGTTTTTTCTCCGATGCCAGAGTCACACCCGGGGGAAGAAGGTTT
CACGGAACCCCCCTGCCCCCCCCCTCTGCCCCGACGTTGCCTTGATCGCT
TCTTGATGGCCCGCTCCGCTCCTTTTTGTTGGGCTGTCTCTTTTCGTGCT
GGGCGCCTTTGGGCCGCGGGTCCGTCTTTCTCTTGACGGTTTTTCCTTTC
CCAGATTGTACTTGGGGTCCTGCTACTTCTCACGGCGATACTCTACGCCT
TTGCTCAGGTGACCACTTTGACCTCTTGCGCATGTGTCTCTACGTCCGCA
CCTGCTGTCCTGGTTGTCGCTTCGTCGGAACGGCCAACGGTAGCTAGGGT
CTGGTGGTAGGGCGGCGGGTTTCGTGAGCGGCGATTGCGTACCGTTGAGA
CTTGTGTGTGCTCGGTTGGGGTGAAGATTGCTCAGGTGCCTTTTTTGTTC
TCTTCGTTTCTATCTCTCTCTCGATCTCTACCCCTCTCTCTGTGTGTGTT
ACTCATCCCGTCTTTCTCTCTTTTGGGTGTGTCTCTCTCAATCCACTTGT
GCAAACAAACCCGCCAGCCTTGTGTGTTGTGTACCGTACTTGCCCCCCAA
ACCTAGAGCCCCCCCCCCCGCGTGCCGTTTCTCAACGCCCTGCCGTGCCT
CGCTCGTGCACTGAAAAAAAAAGATCGTGGGGTCGGCAATCACGGACACA
ACCACGGTGCCCTCAGACGCGGCGCCAGCCGACGGTCAGACTCCTTTCGG
GACCTTCACATGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig89:163566..167028-

>mRNA_Ecto-sp6_S_contig89.17922.1 ID=mRNA_Ecto-sp6_S_contig89.17922.1|Name=mRNA_Ecto-sp6_S_contig89.17922.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:163566..167028- (Ectocarpus species6 EcLAC_371)
ATGCCGGAATTCCACTTCATGGAATCCGACTGGGGGATCCACGCCAAGCG
AGGCGGGAGCATCTGCACCGCCACATCGCTGGCTTGCACGGTGGTCGGGT
TCATCTTCTGGCGCTGGTTCGGGGCCGTTCTTTCTCTCGCGATCGGCCTT
CTCTTGGCCACGTTTGAAGTGCCCTTCGTCTACAAATGTTTCGAGCCGTG
CCGACGTCTGGAGACGATCTTAAACGACACCCTGAAGTTCAGTATTCCGG
CCGTTCGCGCGGTCCTGTACTTGTGCCTCGCCATCGTCGCCTTCACATCA
AATTTGCTGAACATTGTACTTGGGGTCCTGCTACTTCTCACGGCGATACT
CTACGCCTTTGCTCAGATCGTGGGGTCGGCAATCACGGACACAACCACGG
TGCCCTCAGACGCGGCGCCAGCCGACGGTCAGACTCCTTTCGGGACCTTC
ACATGA
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