mRNA_Ecto-sp6_S_contig89.17913.1 (mRNA) Ectocarpus species6 EcLAC_371
|
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig89.17913.1 vs. uniprot
Match: D8LKH1_ECTSI (Uracil-DNA glycosylase superfamily protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKH1_ECTSI) HSP 1 Score: 632 bits (1630), Expect = 5.000e-228 Identity = 314/317 (99.05%), Postives = 315/317 (99.37%), Query Frame = 1
Query: 157 MPPKTKKRSSVAAGLAPAADRKAGDSSCSSRATKQGRRLKAEGGNAGAEAGGPTLVSCGDELVRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHAKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASPTGVKWEKATCLNELVLNSSKSKEIDRFLQ 1107
MPPKTKKRSSVAAGLAPAADRKAGDSSCSSRATKQGRRLKAEGG+AGAEAGG TLVSCGDELVRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEH KRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASPTGVKWEKATCLNELVLNSSKSKEIDRFLQ
Sbjct: 1 MPPKTKKRSSVAAGLAPAADRKAGDSSCSSRATKQGRRLKAEGGSAGAEAGGSTLVSCGDELVRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHTKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASPTGVKWEKATCLNELVLNSSKSKEIDRFLQ 317
BLAST of mRNA_Ecto-sp6_S_contig89.17913.1 vs. uniprot
Match: A0A3N5VL41_9BACT (Single-strand selective monofunctional uracil-DNA glycosylase n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A3N5VL41_9BACT) HSP 1 Score: 220 bits (560), Expect = 9.570e-67 Identity = 117/242 (48.35%), Postives = 153/242 (63.22%), Query Frame = 1
Query: 322 VSCGDELVRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHAKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASPTGVK-WEKA 1044
+S +L+ +RRL D+L D T PV+C Y L+YA ++ Y +RYG G R +GMNPGP+GM QTGVPFGEV VRDWL++ V +P+ EH KRPV GF+C RSEVSG RLWG F RFGTADA+ FV N+CPL +MS++G N+TPDKL AE +++AC LAE+I LKPS ++ +G FA + A + SG AA + + HPSPASP + W +A
Sbjct: 1 MSAATDLIASTRRLCDALGDL----TFAAPVACVYRPLQYAWRPHQRYLERYGRGPK--RVVFLGMNPGPFGMAQTGVPFGEVAAVRDWLEIHEPVDKPAGEHPKRPVEGFNCTRSEVSGRRLWGLFAERFGTADAFFKDHFVLNYCPLVWMSATGANLTPDKLPAAEMAPVEDACLAHLAEVIGLLKPSFLIGIGGFAEQRLLRAAETSGSKAA------IGRILHPSPASPAANRGWAEA 230
BLAST of mRNA_Ecto-sp6_S_contig89.17913.1 vs. uniprot
Match: A0A2W4L8P9_9PROT (Single-stranded DNA-binding protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4L8P9_9PROT) HSP 1 Score: 217 bits (553), Expect = 9.190e-66 Identity = 117/237 (49.37%), Postives = 149/237 (62.87%), Query Frame = 1
Query: 310 GPTLVSCGDELVRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHAKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASP 1020
GP L D+LVR R L PV+ YN L+YA E +E Y +RYG GR A +GMNPGP+GM QTGVPFGEV VRDWLK++G VG+P EH KRPV GFDC RSEVSG+R+WG+ FGT + + ++ FV N+CPL FM +SG N+TPDKL AERE + AC AL M+ +P V+ VGNFA ++ EA++ +G++ V + HPSPASP
Sbjct: 3 GPIL----DDLVRELRPLRFG-----------PPVTHVYNPLQYAREPHERYLERYGQGRK--EAVFLGMNPGPFGMAQTGVPFGEVRIVRDWLKIEGKVGKPPVEHPKRPVQGFDCPRSEVSGSRIWGWVRDTFGTPERFFERFFVANYCPLVFMEASGRNLTPDKLPRAEREPLFAACDRALRRMMEIWQPRWVIGVGNFAEARAREALEGTGIS--------VGRILHPSPASP 214
BLAST of mRNA_Ecto-sp6_S_contig89.17913.1 vs. uniprot
Match: UPI001B8AC5B4 (single-stranded DNA-binding protein n=1 Tax=Luteolibacter ambystomatis TaxID=2824561 RepID=UPI001B8AC5B4) HSP 1 Score: 216 bits (551), Expect = 2.220e-65 Identity = 114/236 (48.31%), Postives = 150/236 (63.56%), Query Frame = 1
Query: 340 LVRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHAKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASPTGVK-WEKA 1044
L+ SRRL +L ++ PVS +YN LEYA +E Y +YG G+ R +GMNPGP+GM QTGVPFGE+ VRDW+ ++ VG+P EH KRP+ GF C +SEVSG RLWG F RFGTA+A+ FV N+CPL +MSS+G N+TPDKL+ AE E +++AC LAE+I L+P +V VG FA + A +G GE ++ V HPSPASP + W +A
Sbjct: 6 LIDSSRRLESALHGARFS----PPVSHAYNPLEYARVPHELYLSKYGKGKK--RVLFLGMNPGPFGMAQTGVPFGEIAAVRDWMGIEAPVGKPVPEHLKRPIEGFACPKSEVSGRRLWGLFAERFGTAEAFFKDHFVANYCPLVWMSSTGANLTPDKLSSAEMEPVEQACLAHLAEVIGILQPEWLVGVGAFAEERLRRAAAKAG------GEFKIGRVLHPSPASPAANRGWSEA 229
BLAST of mRNA_Ecto-sp6_S_contig89.17913.1 vs. uniprot
Match: A0A4V1SDI5_9BACT (Single-strand selective monofunctional uracil-DNA glycosylase n=2 Tax=Verrucomicrobiaceae TaxID=203557 RepID=A0A4V1SDI5_9BACT) HSP 1 Score: 215 bits (548), Expect = 5.690e-65 Identity = 111/237 (46.84%), Postives = 152/237 (64.14%), Query Frame = 1
Query: 337 ELVRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHAKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASPTGVK-WEKA 1044
EL+ + RL + L++ ++ PV+ Y L+Y E + Y +R+G G+ + +GMNPGP+GM QTGVPFGEV VRDW+ ++ +VG+P EH KRP+ GF CQRSEVSG RLWG F RFGTADA+ FV N+CPL +MSS+G N+TPDKL+ AE ++ AC + L E+I+ LKPS ++ VG FA + A ++SG A + V HPSPASP + W +A
Sbjct: 3 ELIASTGRLAEDLRELEFS----PPVAHVYRTLDYTWEAHRKYLERFGKGKK--KVVFLGMNPGPFGMAQTGVPFGEVAAVRDWMGIEASVGKPPHEHPKRPIEGFACQRSEVSGRRLWGLFSERFGTADAFFKDHFVLNYCPLVWMSSTGANLTPDKLSAAEMAPVEAACQKHLQEVIALLKPSWLIGVGGFAEERLRRAAESSGSKA------RIGRVLHPSPASPAANRGWAEA 227
BLAST of mRNA_Ecto-sp6_S_contig89.17913.1 vs. uniprot
Match: A0A2A4P0Q3_9BACT (Single-stranded DNA-binding protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2A4P0Q3_9BACT) HSP 1 Score: 214 bits (545), Expect = 1.460e-64 Identity = 109/228 (47.81%), Postives = 146/228 (64.04%), Query Frame = 1
Query: 337 ELVRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHAKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASP 1020
E++ I+RRL + + K+ +P++ YN L+YA + +E Y +RY RP +A ++GMNPGPWGM QTGVPFGEV VR+WLK+ G V +P+K H KRP+ G +C RSEVSG RLW + RF +AD + D FV+N+CPL FM SG N TPDKL AERE + +AC AL + ALKP +VV VG FA + + A ++E+ + HPSPASP
Sbjct: 2 EVIDIARRLSREVSNLKFS----EPITHVYNPLDYAWDLHEQYLRRYS--RPGVKAILLGMNPGPWGMAQTGVPFGEVTHVREWLKLDGEVKQPAKIHPKRPIQGLNCHRSEVSGRRLWSWARERFSSADHFFDNFFVFNWCPLCFMEESGRNRTPDKLPAAEREPLQQACDRALVASVRALKPGMVVGVGKFARDQAARILAAE--------DIEIGQILHPSPASP 215
BLAST of mRNA_Ecto-sp6_S_contig89.17913.1 vs. uniprot
Match: A0A831XLZ5_GEOME (Single-strand selective monofunctional uracil-DNA glycosylase n=2 Tax=Geobacter TaxID=28231 RepID=A0A831XLZ5_GEOME) HSP 1 Score: 213 bits (541), Expect = 6.010e-64 Identity = 111/218 (50.92%), Postives = 136/218 (62.39%), Query Frame = 1
Query: 409 PVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHAKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASPTGVKWEKATCLNEL 1062
PV+C YN L YA E + AY R+G P +VGMNPGPWGM QTGVPFGE+G V +WL V G V RP+ EH K+ V GF C+RSEVSG RLWG RFGT + + + FV N+CPL F++ GGNITPDKL E+E + AC AL + L+P VVV VG FA +C EA+ +GLN VEV + HPSPASP + L +L
Sbjct: 23 PVACVYNPLVYAREPHAAYLSRFGS--PPKEVLIVGMNPGPWGMAQTGVPFGEIGVVAEWLGVTGTVTRPADEHPKKRVDGFACRRSEVSGRRLWGLVRERFGTPERFFARFFVANYCPLLFLTVDGGNITPDKLRRGEQEPLFAACDRALRRTVDLLRPRVVVGVGGFAEGRCREAL--AGLN------VEVGRIIHPSPASPAANRDWAGAALRQL 230
BLAST of mRNA_Ecto-sp6_S_contig89.17913.1 vs. uniprot
Match: A0A2I6QL86_9BACT (Uracil-DNA glycosylase family 3 n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A2I6QL86_9BACT) HSP 1 Score: 212 bits (540), Expect = 9.040e-64 Identity = 113/236 (47.88%), Postives = 149/236 (63.14%), Query Frame = 1
Query: 343 VRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHAKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASPTGVK-WEKAT 1047
VRISR L +++ K + +PV+C YN L YA+ +E Y +RY G A +GMNPGP+GM QTGVPFGEV VRDWL V+G VG P H RPVHGF C RSEVSG RLWG+ + RF T + + + FV+N+CPL FM SG N+TPDKL+ A+RE + AC +AL E++ L+P V+V VGNFA ++ A+ + ++ + HPSPASP + W AT
Sbjct: 6 VRISRELSCAVR----KMSFDEPVACVYNPLHYAAAPHEDYLRRYANGEK--EALFLGMNPGPFGMAQTGVPFGEVAHVRDWLDVRGEVGAPEPLHPARPVHGFACARSEVSGARLWGWAKTRFVTPERFFARFFVHNYCPLCFMEDSGRNLTPDKLSAAQREALFRACDKALRELVMLLRPKVLVGVGNFAEARFRAALP--------EFRGKIGRIPHPSPASPAANRGWAAAT 227
BLAST of mRNA_Ecto-sp6_S_contig89.17913.1 vs. uniprot
Match: A0A3N5QI00_9GAMM (Single-strand selective monofunctional uracil-DNA glycosylase n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A3N5QI00_9GAMM) HSP 1 Score: 212 bits (539), Expect = 1.160e-63 Identity = 106/227 (46.70%), Postives = 140/227 (61.67%), Query Frame = 1
Query: 340 LVRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHAKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASP 1020
LV +SR L + + ++ PV C YN LEYA +E Y RYGGG ++GMNPGP+GM QTGVPFG+V VRDWL + V RP EH KRPV GFDC R+E+SGTRLWG+ RFGT + ++ FV N+CPL F+++SG N+TPDKL AE+ + AC EAL ++ L+P +V+ VG FA + A+ G + + + HPSPASP
Sbjct: 3 LVDVSRALSERVASLRFA----DPVCCVYNPLEYARAPHELYLSRYGGGPK--EVLLLGMNPGPFGMAQTGVPFGDVTMVRDWLGIVAPVARPRDEHPKRPVLGFDCHRTEISGTRLWGWARDRFGTPQRFFERFFVANYCPLAFVAASGANLTPDKLPAAEQRAVSSACDEALRAVVRLLRPQIVIGVGGFAERRARAAL--------GGENIAIGTILHPSPASP 215
BLAST of mRNA_Ecto-sp6_S_contig89.17913.1 vs. uniprot
Match: UPI0019034DE8 (single-stranded DNA-binding protein n=1 Tax=Luteolibacter pohnpeiensis TaxID=454153 RepID=UPI0019034DE8) HSP 1 Score: 211 bits (538), Expect = 1.980e-63 Identity = 109/237 (45.99%), Postives = 153/237 (64.56%), Query Frame = 1
Query: 337 ELVRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHAKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASPTGVK-WEKA 1044
+L++ +R L D L+D ++ PV+ +Y LEYA + +E Y +++G G+ R +GMNPGP+GM QTGVPFGE+ V+DW+ +QG VG+P+ EH KRP+ GF CQRSEVSG RLWG F+ RFGTADA+ + FV N+CPL +MS++G N+TPDK+ A ++ AC LA I AL+P ++ VG FA + A + G A+ + V HPSPASP + W +A
Sbjct: 6 KLIKAARVLTDELRDLEFPA----PVAYTYLPLEYAWKPHEDYLKKFGSGKK--RVLFLGMNPGPFGMAQTGVPFGEIAAVKDWMGIQGEVGKPAHEHPKRPIEGFACQRSEVSGRRLWGLFQDRFGTADAFFEDHFVTNYCPLVWMSATGANLTPDKIAAASMVEVEGACLRHLASTILALQPEFLIGVGAFAEQRIRTAAETVGSKAS------IGKVLHPSPASPAANRGWAEA 230 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig89.17913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig89.17913.1 >prot_Ecto-sp6_S_contig89.17913.1 ID=prot_Ecto-sp6_S_contig89.17913.1|Name=mRNA_Ecto-sp6_S_contig89.17913.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=370bp MSYGITAVNHMHATLLLGSIAVSSLCTAAVELSVVRRAAFATASPPAPRSback to top mRNA from alignment at Ecto-sp6_S_contig89:51840..56410+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig89.17913.1 ID=mRNA_Ecto-sp6_S_contig89.17913.1|Name=mRNA_Ecto-sp6_S_contig89.17913.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4571bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:51840..56410+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig89:51840..56410+ >mRNA_Ecto-sp6_S_contig89.17913.1 ID=mRNA_Ecto-sp6_S_contig89.17913.1|Name=mRNA_Ecto-sp6_S_contig89.17913.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1110bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:51840..56410+ (Ectocarpus species6 EcLAC_371)back to top |