mRNA_Ecto-sp6_S_contig89.17913.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig89.17913.1
Unique NamemRNA_Ecto-sp6_S_contig89.17913.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig89.17913.1 vs. uniprot
Match: D8LKH1_ECTSI (Uracil-DNA glycosylase superfamily protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKH1_ECTSI)

HSP 1 Score: 632 bits (1630), Expect = 5.000e-228
Identity = 314/317 (99.05%), Postives = 315/317 (99.37%), Query Frame = 1
Query:  157 MPPKTKKRSSVAAGLAPAADRKAGDSSCSSRATKQGRRLKAEGGNAGAEAGGPTLVSCGDELVRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHAKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASPTGVKWEKATCLNELVLNSSKSKEIDRFLQ 1107
            MPPKTKKRSSVAAGLAPAADRKAGDSSCSSRATKQGRRLKAEGG+AGAEAGG TLVSCGDELVRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEH KRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASPTGVKWEKATCLNELVLNSSKSKEIDRFLQ
Sbjct:    1 MPPKTKKRSSVAAGLAPAADRKAGDSSCSSRATKQGRRLKAEGGSAGAEAGGSTLVSCGDELVRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHTKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASPTGVKWEKATCLNELVLNSSKSKEIDRFLQ 317          
BLAST of mRNA_Ecto-sp6_S_contig89.17913.1 vs. uniprot
Match: A0A3N5VL41_9BACT (Single-strand selective monofunctional uracil-DNA glycosylase n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A3N5VL41_9BACT)

HSP 1 Score: 220 bits (560), Expect = 9.570e-67
Identity = 117/242 (48.35%), Postives = 153/242 (63.22%), Query Frame = 1
Query:  322 VSCGDELVRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHAKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASPTGVK-WEKA 1044
            +S   +L+  +RRL D+L D     T   PV+C Y  L+YA   ++ Y +RYG G    R   +GMNPGP+GM QTGVPFGEV  VRDWL++   V +P+ EH KRPV GF+C RSEVSG RLWG F  RFGTADA+    FV N+CPL +MS++G N+TPDKL  AE   +++AC   LAE+I  LKPS ++ +G FA  +   A + SG  AA      +  + HPSPASP   + W +A
Sbjct:    1 MSAATDLIASTRRLCDALGDL----TFAAPVACVYRPLQYAWRPHQRYLERYGRGPK--RVVFLGMNPGPFGMAQTGVPFGEVAAVRDWLEIHEPVDKPAGEHPKRPVEGFNCTRSEVSGRRLWGLFAERFGTADAFFKDHFVLNYCPLVWMSATGANLTPDKLPAAEMAPVEDACLAHLAEVIGLLKPSFLIGIGGFAEQRLLRAAETSGSKAA------IGRILHPSPASPAANRGWAEA 230          
BLAST of mRNA_Ecto-sp6_S_contig89.17913.1 vs. uniprot
Match: A0A2W4L8P9_9PROT (Single-stranded DNA-binding protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4L8P9_9PROT)

HSP 1 Score: 217 bits (553), Expect = 9.190e-66
Identity = 117/237 (49.37%), Postives = 149/237 (62.87%), Query Frame = 1
Query:  310 GPTLVSCGDELVRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHAKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASP 1020
            GP L    D+LVR  R L               PV+  YN L+YA E +E Y +RYG GR    A  +GMNPGP+GM QTGVPFGEV  VRDWLK++G VG+P  EH KRPV GFDC RSEVSG+R+WG+    FGT + + ++ FV N+CPL FM +SG N+TPDKL  AERE +  AC  AL  M+   +P  V+ VGNFA ++  EA++ +G++        V  + HPSPASP
Sbjct:    3 GPIL----DDLVRELRPLRFG-----------PPVTHVYNPLQYAREPHERYLERYGQGRK--EAVFLGMNPGPFGMAQTGVPFGEVRIVRDWLKIEGKVGKPPVEHPKRPVQGFDCPRSEVSGSRIWGWVRDTFGTPERFFERFFVANYCPLVFMEASGRNLTPDKLPRAEREPLFAACDRALRRMMEIWQPRWVIGVGNFAEARAREALEGTGIS--------VGRILHPSPASP 214          
BLAST of mRNA_Ecto-sp6_S_contig89.17913.1 vs. uniprot
Match: UPI001B8AC5B4 (single-stranded DNA-binding protein n=1 Tax=Luteolibacter ambystomatis TaxID=2824561 RepID=UPI001B8AC5B4)

HSP 1 Score: 216 bits (551), Expect = 2.220e-65
Identity = 114/236 (48.31%), Postives = 150/236 (63.56%), Query Frame = 1
Query:  340 LVRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHAKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASPTGVK-WEKA 1044
            L+  SRRL  +L   ++      PVS +YN LEYA   +E Y  +YG G+   R   +GMNPGP+GM QTGVPFGE+  VRDW+ ++  VG+P  EH KRP+ GF C +SEVSG RLWG F  RFGTA+A+    FV N+CPL +MSS+G N+TPDKL+ AE E +++AC   LAE+I  L+P  +V VG FA  +   A   +G      GE ++  V HPSPASP   + W +A
Sbjct:    6 LIDSSRRLESALHGARFS----PPVSHAYNPLEYARVPHELYLSKYGKGKK--RVLFLGMNPGPFGMAQTGVPFGEIAAVRDWMGIEAPVGKPVPEHLKRPIEGFACPKSEVSGRRLWGLFAERFGTAEAFFKDHFVANYCPLVWMSSTGANLTPDKLSSAEMEPVEQACLAHLAEVIGILQPEWLVGVGAFAEERLRRAAAKAG------GEFKIGRVLHPSPASPAANRGWSEA 229          
BLAST of mRNA_Ecto-sp6_S_contig89.17913.1 vs. uniprot
Match: A0A4V1SDI5_9BACT (Single-strand selective monofunctional uracil-DNA glycosylase n=2 Tax=Verrucomicrobiaceae TaxID=203557 RepID=A0A4V1SDI5_9BACT)

HSP 1 Score: 215 bits (548), Expect = 5.690e-65
Identity = 111/237 (46.84%), Postives = 152/237 (64.14%), Query Frame = 1
Query:  337 ELVRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHAKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASPTGVK-WEKA 1044
            EL+  + RL + L++ ++      PV+  Y  L+Y  E +  Y +R+G G+   +   +GMNPGP+GM QTGVPFGEV  VRDW+ ++ +VG+P  EH KRP+ GF CQRSEVSG RLWG F  RFGTADA+    FV N+CPL +MSS+G N+TPDKL+ AE   ++ AC + L E+I+ LKPS ++ VG FA  +   A ++SG  A       +  V HPSPASP   + W +A
Sbjct:    3 ELIASTGRLAEDLRELEFS----PPVAHVYRTLDYTWEAHRKYLERFGKGKK--KVVFLGMNPGPFGMAQTGVPFGEVAAVRDWMGIEASVGKPPHEHPKRPIEGFACQRSEVSGRRLWGLFSERFGTADAFFKDHFVLNYCPLVWMSSTGANLTPDKLSAAEMAPVEAACQKHLQEVIALLKPSWLIGVGGFAEERLRRAAESSGSKA------RIGRVLHPSPASPAANRGWAEA 227          
BLAST of mRNA_Ecto-sp6_S_contig89.17913.1 vs. uniprot
Match: A0A2A4P0Q3_9BACT (Single-stranded DNA-binding protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2A4P0Q3_9BACT)

HSP 1 Score: 214 bits (545), Expect = 1.460e-64
Identity = 109/228 (47.81%), Postives = 146/228 (64.04%), Query Frame = 1
Query:  337 ELVRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHAKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASP 1020
            E++ I+RRL   + + K+     +P++  YN L+YA + +E Y +RY   RP  +A ++GMNPGPWGM QTGVPFGEV  VR+WLK+ G V +P+K H KRP+ G +C RSEVSG RLW +   RF +AD + D  FV+N+CPL FM  SG N TPDKL  AERE + +AC  AL   + ALKP +VV VG FA  +    + A         ++E+  + HPSPASP
Sbjct:    2 EVIDIARRLSREVSNLKFS----EPITHVYNPLDYAWDLHEQYLRRYS--RPGVKAILLGMNPGPWGMAQTGVPFGEVTHVREWLKLDGEVKQPAKIHPKRPIQGLNCHRSEVSGRRLWSWARERFSSADHFFDNFFVFNWCPLCFMEESGRNRTPDKLPAAEREPLQQACDRALVASVRALKPGMVVGVGKFARDQAARILAAE--------DIEIGQILHPSPASP 215          
BLAST of mRNA_Ecto-sp6_S_contig89.17913.1 vs. uniprot
Match: A0A831XLZ5_GEOME (Single-strand selective monofunctional uracil-DNA glycosylase n=2 Tax=Geobacter TaxID=28231 RepID=A0A831XLZ5_GEOME)

HSP 1 Score: 213 bits (541), Expect = 6.010e-64
Identity = 111/218 (50.92%), Postives = 136/218 (62.39%), Query Frame = 1
Query:  409 PVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHAKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASPTGVKWEKATCLNEL 1062
            PV+C YN L YA E + AY  R+G   P     +VGMNPGPWGM QTGVPFGE+G V +WL V G V RP+ EH K+ V GF C+RSEVSG RLWG    RFGT + +  + FV N+CPL F++  GGNITPDKL   E+E +  AC  AL   +  L+P VVV VG FA  +C EA+  +GLN      VEV  + HPSPASP   +      L +L
Sbjct:   23 PVACVYNPLVYAREPHAAYLSRFGS--PPKEVLIVGMNPGPWGMAQTGVPFGEIGVVAEWLGVTGTVTRPADEHPKKRVDGFACRRSEVSGRRLWGLVRERFGTPERFFARFFVANYCPLLFLTVDGGNITPDKLRRGEQEPLFAACDRALRRTVDLLRPRVVVGVGGFAEGRCREAL--AGLN------VEVGRIIHPSPASPAANRDWAGAALRQL 230          
BLAST of mRNA_Ecto-sp6_S_contig89.17913.1 vs. uniprot
Match: A0A2I6QL86_9BACT (Uracil-DNA glycosylase family 3 n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A2I6QL86_9BACT)

HSP 1 Score: 212 bits (540), Expect = 9.040e-64
Identity = 113/236 (47.88%), Postives = 149/236 (63.14%), Query Frame = 1
Query:  343 VRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHAKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASPTGVK-WEKAT 1047
            VRISR L  +++    K +  +PV+C YN L YA+  +E Y +RY  G     A  +GMNPGP+GM QTGVPFGEV  VRDWL V+G VG P   H  RPVHGF C RSEVSG RLWG+ + RF T + +  + FV+N+CPL FM  SG N+TPDKL+ A+RE +  AC +AL E++  L+P V+V VGNFA ++   A+         +   ++  + HPSPASP   + W  AT
Sbjct:    6 VRISRELSCAVR----KMSFDEPVACVYNPLHYAAAPHEDYLRRYANGEK--EALFLGMNPGPFGMAQTGVPFGEVAHVRDWLDVRGEVGAPEPLHPARPVHGFACARSEVSGARLWGWAKTRFVTPERFFARFFVHNYCPLCFMEDSGRNLTPDKLSAAQREALFRACDKALRELVMLLRPKVLVGVGNFAEARFRAALP--------EFRGKIGRIPHPSPASPAANRGWAAAT 227          
BLAST of mRNA_Ecto-sp6_S_contig89.17913.1 vs. uniprot
Match: A0A3N5QI00_9GAMM (Single-strand selective monofunctional uracil-DNA glycosylase n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A3N5QI00_9GAMM)

HSP 1 Score: 212 bits (539), Expect = 1.160e-63
Identity = 106/227 (46.70%), Postives = 140/227 (61.67%), Query Frame = 1
Query:  340 LVRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHAKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASP 1020
            LV +SR L + +   ++      PV C YN LEYA   +E Y  RYGGG       ++GMNPGP+GM QTGVPFG+V  VRDWL +   V RP  EH KRPV GFDC R+E+SGTRLWG+   RFGT   + ++ FV N+CPL F+++SG N+TPDKL  AE+  +  AC EAL  ++  L+P +V+ VG FA  +   A+        G   + +  + HPSPASP
Sbjct:    3 LVDVSRALSERVASLRFA----DPVCCVYNPLEYARAPHELYLSRYGGGPK--EVLLLGMNPGPFGMAQTGVPFGDVTMVRDWLGIVAPVARPRDEHPKRPVLGFDCHRTEISGTRLWGWARDRFGTPQRFFERFFVANYCPLAFVAASGANLTPDKLPAAEQRAVSSACDEALRAVVRLLRPQIVIGVGGFAERRARAAL--------GGENIAIGTILHPSPASP 215          
BLAST of mRNA_Ecto-sp6_S_contig89.17913.1 vs. uniprot
Match: UPI0019034DE8 (single-stranded DNA-binding protein n=1 Tax=Luteolibacter pohnpeiensis TaxID=454153 RepID=UPI0019034DE8)

HSP 1 Score: 211 bits (538), Expect = 1.980e-63
Identity = 109/237 (45.99%), Postives = 153/237 (64.56%), Query Frame = 1
Query:  337 ELVRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHAKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASPTGVK-WEKA 1044
            +L++ +R L D L+D ++      PV+ +Y  LEYA + +E Y +++G G+   R   +GMNPGP+GM QTGVPFGE+  V+DW+ +QG VG+P+ EH KRP+ GF CQRSEVSG RLWG F+ RFGTADA+ +  FV N+CPL +MS++G N+TPDK+  A    ++ AC   LA  I AL+P  ++ VG FA  +   A +  G  A+      +  V HPSPASP   + W +A
Sbjct:    6 KLIKAARVLTDELRDLEFPA----PVAYTYLPLEYAWKPHEDYLKKFGSGKK--RVLFLGMNPGPFGMAQTGVPFGEIAAVKDWMGIQGEVGKPAHEHPKRPIEGFACQRSEVSGRRLWGLFQDRFGTADAFFEDHFVTNYCPLVWMSATGANLTPDKIAAASMVEVEGACLRHLASTILALQPEFLIGVGAFAEQRIRTAAETVGSKAS------IGKVLHPSPASPAANRGWAEA 230          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig89.17913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKH1_ECTSI5.000e-22899.05Uracil-DNA glycosylase superfamily protein n=2 Tax... [more]
A0A3N5VL41_9BACT9.570e-6748.35Single-strand selective monofunctional uracil-DNA ... [more]
A0A2W4L8P9_9PROT9.190e-6649.37Single-stranded DNA-binding protein n=1 Tax=Proteo... [more]
UPI001B8AC5B42.220e-6548.31single-stranded DNA-binding protein n=1 Tax=Luteol... [more]
A0A4V1SDI5_9BACT5.690e-6546.84Single-strand selective monofunctional uracil-DNA ... [more]
A0A2A4P0Q3_9BACT1.460e-6447.81Single-stranded DNA-binding protein n=1 Tax=Planct... [more]
A0A831XLZ5_GEOME6.010e-6450.92Single-strand selective monofunctional uracil-DNA ... [more]
A0A2I6QL86_9BACT9.040e-6447.88Uracil-DNA glycosylase family 3 n=1 Tax=uncultured... [more]
A0A3N5QI00_9GAMM1.160e-6346.70Single-strand selective monofunctional uracil-DNA ... [more]
UPI0019034DE81.980e-6345.99single-stranded DNA-binding protein n=1 Tax=Luteol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig89contigEcto-sp6_S_contig89:51840..56410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score630.9
Seed ortholog evalue3.6e-178
Seed eggNOG ortholog2880.D8LKH1
Preferred nameSMUG1
Model size1110
KEGG koko:K10800
KEGG Pathwayko03410,map03410
Hectar predicted targeting categorysignal peptide
GOsGO:0000702,GO:0000703,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0004844,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006220,GO:0006244,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006304,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009219,GO:0009223,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0017065,GO:0018130,GO:0019104,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0031974,GO:0031981,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045008,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0055086,GO:0070013,GO:0071704,GO:0072527,GO:0072529,GO:0090304,GO:0097159,GO:0097506,GO:0140097,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576
Exons7
EggNOG free text desc.single-strand selective uracil DNA N-glycosylase activity
EggNOG OGs28KKK@1,2QT20@2759
Ec32 ortholog descriptionUracil-DNA glycosylase-like
Ec32 orthologEc-16_002940.1
Cds size1110
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig89.17913.1prot_Ecto-sp6_S_contig89.17913.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig89 51840..56410 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350507.686083-CDS-Ecto-sp6_S_contig89:51839..522181682350507.686083-CDS-Ecto-sp6_S_contig89:51839..52218Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 51840..52218 +
1682350507.699182-CDS-Ecto-sp6_S_contig89:53661..538221682350507.699182-CDS-Ecto-sp6_S_contig89:53661..53822Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 53662..53822 +
1682350507.708267-CDS-Ecto-sp6_S_contig89:54029..541611682350507.708267-CDS-Ecto-sp6_S_contig89:54029..54161Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 54030..54161 +
1682350507.723335-CDS-Ecto-sp6_S_contig89:54568..546321682350507.723335-CDS-Ecto-sp6_S_contig89:54568..54632Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 54569..54632 +
1682350507.734423-CDS-Ecto-sp6_S_contig89:55062..551351682350507.734423-CDS-Ecto-sp6_S_contig89:55062..55135Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 55063..55135 +
1682350507.7461262-CDS-Ecto-sp6_S_contig89:55375..555021682350507.7461262-CDS-Ecto-sp6_S_contig89:55375..55502Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 55376..55502 +
1682350507.7540128-CDS-Ecto-sp6_S_contig89:56236..564101682350507.7540128-CDS-Ecto-sp6_S_contig89:56236..56410Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 56237..56410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig89.17913.1

>prot_Ecto-sp6_S_contig89.17913.1 ID=prot_Ecto-sp6_S_contig89.17913.1|Name=mRNA_Ecto-sp6_S_contig89.17913.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=370bp
MSYGITAVNHMHATLLLGSIAVSSLCTAAVELSVVRRAAFATASPPAPRS
TTMPPKTKKRSSVAAGLAPAADRKAGDSSCSSRATKQGRRLKAEGGNAGA
EAGGPTLVSCGDELVRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASE
TNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQ
GAVGRPSKEHAKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFV
YNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVV
AVGNFAGSKCHEAVKASGLNAAGKGEVEVVVVNHPSPASPTGVKWEKATC
LNELVLNSSKSKEIDRFLQ*
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mRNA from alignment at Ecto-sp6_S_contig89:51840..56410+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig89.17913.1 ID=mRNA_Ecto-sp6_S_contig89.17913.1|Name=mRNA_Ecto-sp6_S_contig89.17913.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4571bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:51840..56410+ (Ectocarpus species6 EcLAC_371)
ATGTCCTACGGCATCACAGCTGTCAACCACATGCATGCAACATTGCTGCT CGGATCAATCGCTGTCTCCTCTCTTTGCACCGCCGCTGTTGAGCTCTCGG TAGTCCGGCGTGCCGCGTTTGCTACCGCCTCACCGCCGGCCCCCCGTTCG ACAACGATGCCCCCAAAAACGAAGAAGCGATCATCTGTAGCAGCAGGGCT GGCGCCTGCTGCTGACAGGAAGGCTGGAGACAGCAGCTGCAGCAGCAGAG CAACAAAGCAAGGACGGCGATTGAAAGCTGAAGGAGGAAATGCTGGCGCG GAGGCTGGTGGACCAACCCTTGTGTCGTGTGGGGACGAGCTGGTGCGAAT ATCGCGCCGCCTTCATGACAGTCTCAAAGGTACACTACATACTTTCTGTG TAGGATGGTTGATCCTTGGTTGCTGTCAATGCCGGTACTACTAAATAGTA CTTTCACACGGTTTGGTGATCTTAGTTCAACAGCAGTAAATCCCCACACC ACGAACGGACTGGACACCCACCCACGGTTGTTCTCGCGGGTCGGTGCCAC TCCTGCGCGTATGGGCAAGGTATTAATAGTTTTGTGGATGAATAATACTG AGTTCTGTTTTTTCTCACACGTCAGAGGTCTCCATCCCCGCAGCGAACAC GCTTTCCCGTTCTCGTGACCCCCAACACGGCGACCTACCTATTAACTGCT GCGTCGATGCTATCTGGCAGGGTTCCGTCATCGCTCAGCAACTTGTGCAC CATATTGATGTAGCGCGTGCTGCGTGAGTTGCATGTTACTCTATTGGATG TACTCAGCATCGACGGgtATTATGTATGTacaaGCAAGATAGAACGGGGG GTTAGGGCGTTtcacagTCACAGAAGTTGCTCTAGACTAGGTTTGGTGGT ACCAACGTTGCCACACATACTGCAGGATTGAGGGTGTGGGTGTCTACAAC GGAATTGGTGTTTGCGGTTTAAGGCTTCTGTGTATGATCAAGTTATTTTC CCCGGCTTCCACGTCACCCGGCTATCACGCCACCCGCCTATCACGCCCCA AGGACTTGCACGTCCTTGTCTATTATACCTTTTACCACGGCTACAAGCAC CGGGCTTCCACGCCACCTCCAGGGATATCACACCCGTTCGAGCTACCACG CCCCACCACAAAGTAGGGAAGGCTACCACGCCTGCGGATATTTTCTGTAC TATACCGTTCAGCGGCTTCCACGCTGCTGGCTCTTTTGTTTCCCACCACC GGACCCCGCGCCGAGGCAATAGTCTACGCAGCAAAATTGATTAAGCAAAC ATATCGGATAAAGTGTTCAATCCGTGCGTTGGGGTTAGGGTTAGGATTAG GGATAGGGTCTGTGTGCCCCCTCCCTATTATTTTCTAGGTACTCTTACAA TCCTGCGTAGGCGGTCCCGCCGAGGCACAAAGCTACTCAACAAACTTAAT AACGAGTTGGGATACACGTTGCTATCCCAACCAAAGCGTGTGCCGTAGGA TGCCAACTAAAGCGTGTGCCGTAGGTTGCATCCGTAAGATACCACACCCC CTGGACCGATTTTCAAGGCTTGATTACCCCACGAAGAAGAAGAGGATGCC GAAATCAAACGATACGTGACGTGTTCGGAAAGCTCTCGACGGGACGATCA CAACGCCGCCAGATTCGGCACCTTGGCTGTTTTCTGCCGTGGAGTACTCG AGCTTTGATAAATCGGTCCAGGGGGTGTGATATCTTATGCAACCTGCGGT ATGTCGCCACCGTCCGTAGTTCCAACGGACAACCCTCTGTGCCTCCCTCC CCTTTCAACCTGCGGAAAACAGACCGGAAGTGGAAGGGCACCAGCAAGCA GCCGGTGTCATGCTCGTACAACGTCCTCGAGTACGCCTCAGAGACAAACG AGGCCTACACGCAGCGGTACGGCGGGGGGCGGCCATTCGGAAGGGCGTTC GTTGTGGGCATGAACCCGGGGCCATGGGGTATGGTGAGAAAACTGCTGCT GTAGGCGCCCTTTTTTACACGGCGGCAGAGAGTGGAAGAGGATGGGGTTA GCGTCGGGTGAGAAGGCTCCTACTATTGTAGTTTTTGCGTTGGTAACCGC TAAGGCATGCGAAACATAAGAGTACGCCCCCCCCCCCCCTCTCATGTGTC GCATGATGTGCGAAACGCCATCTCGACCCGTTCTTCTCAGGTGCAAACGG GAGTCCCCTTCGGCGAAGTCGGATTTGTTCGGGACTGGCTGAAGGTACAG GGGGCAGTCGGTCGGCCGAGCAAGGAACACGCCAAACGACCGGTGCATGG CTTCGACTGCCAGCGCAGCGAGGTGCGTCGATTGTCGGCTCTCGATGCTC AGTCTCAACTCCGCTTGATACGCGCGACCGCATCGTTCTAAAAACGAGTG TCTTAAGCGCCATTTTTGTGTGTGTGGGCGTGTGTTCACTGTCAGAATCG ACCGCGTTACTACCGACTGACCAATGATCAGACATCAATGTCTCCGTGCG GCTATAAAAGTGACGAGCTTGTAAACGCCATGACGGTTGTGTGTACATTT TCTTAGTTAGCGTCGACCGCGCTAACCGGCTGACCAATGAAGAGACGCCA GTCTCAGTGCGGTTCAAAACACAGAATGCTTCCACTGACCATGATGTGGG TCCCGTCGTGTGTGTGTGTGTGTGTGTTTGTGTTTGTGTGTGTGTGTGTG TGTCCGGCTCCCCTCCTCGTCCAACACAGGTCAGCGGGACCCGTCTATGG GGCTTTTTCGAACGGAGATTCGGAACGGCGGACGCATGGGGAGGTGCGCT CCGGGACTGTGTGTGCTCTCGCCGAATGCTTGCCTCCGCGTTCAGCGGTA GATGAAATCACCTACATGCTCAACTTACGCCGATCAGGCTTGGGTCCGGG CGTCGTACTACACCGTACACTCGAGTGGCAACCCGTACGTACCGATTTCC TGGTTGCATCGGCCTCGGCATGCAATCGTGTGTTTCATGCCTTGAACGCG TGTCAGCCGGTGCTTGGTGTTCTCGACTGCTGTGAAAATGTTGAAGCTTC TCGACACAGCGAAGATTAGTTGTTGTTGTGACTATCGGCAGAGCTGTGCG TTCGCAACGCTTACTCCTTTTTTGCTTTGTCGCGTCCGTTCATTCCCCCG ATACGAACGGTCGTCGTGATTACATCGCCTTCGTTTCTGTTCTCGCGGGG GTGGGCGGGCGGGGCACACGCAGACAAAATGTTCGTGTACAACTTCTGCC CTCTGACTTTCATGAGCTCTTCGGGAGGCAACATCACCCCGGACAAGTGA GCCCGTGAGCTGATGCTCTGCTTCTGTATTCGGTCATATGAAAACTACGT AGTGTCTGCATTTTGCTGGCAATACACTGACGGTGGGGATTATCAGAATG GTTCTAAACCGGAAGCACTAAATACACCATTGCAAACCCTCGCTTTTTTC GATTAAACCTGTCTCCGATGCCGGTCGCCCCCACTCAACACTTCGGCTTG TCAAAACACCAAAACTGATGAAACTATGTACCACAGGCTGACGCCCGCAG AGCGAGAAGTCATCGACGAGGCTTGCGGCGAAGCCCTTGCGGAGATGATC TCGGCGCTGAAACCGTCCGTGGTCGTCGCCGTCGGCAACTTCGCGGGGTC CAAGTGCCATGAGGTAGGTTAGGTCAGGTCGTCCGTACAATTTCTTTGCA GCTGCTGTAGGAGCGAAAAAGCAAAAGTGGTTTCGAGTAGTTTGAACAGC GCCAAGCGTCATGAGGTTAGGTTAACTCGTCCGTACGCTTTCCTTGCAAC TACTGTAAGACCGAAACAAAAGGCTCTTCTAGTATAGTTTGAACGGTCGT GCTCTCAAAAGCCGCAAAAAACGACCGTGAAAAACTCGGGTGTAAACTAT TCTCGTATTTGGCGGTACCATGGTACCATCCGGCTGGAACATTCAATTTT TGCTTTTGTACGACAGTGACGTTTGTTTTTCTGCACAACTACATAGTGTC GGCAACTGTTGTGCCCTCGCCAGGGCCGGGGTGGAAAGGCCAAACGGCAC CCTCTCTTCCCTCCTCCCGTCGACGGCAAACCGAAGTACAGACCGTGGCA GATACCTGGTTTCTCGTCCGCCATTCATGCCGCTCTCTACGTTAGTGTTC TTTCAAAAACTTGACCTGCGAAACGTCCTCGTTCTTTCTTTCTTCGTTCA GGTCTCAAACTGAAGCGCGCATTTGTTCTTCGCCCCGTCCCGCGAGCCCT CGCCCTCGCCCCCATGTTTTTTTTTTGTGCACCTACAGTCTCTGCCTGGC TGACTGCTCGTCTCTCGCTCTCGCTTGCTCTTTTCGTCTGCCGGTACCAC AACTGTGGCCGACTTGACGACACGTATTGCTTTGTGTGTGTGTGCAGGCG GTGAAGGCGTCCGGGCTCAACGCCGCAGGAAAGGGCGAGGTTGAAGTTGT CGTGGTGAACCACCCGAGCCCCGCCAGCCCCACGGGGGTGAAGTGGGAGA AGGCGACGTGCTTGAACGAGCTCGTGCTCAACAGCAGCAAAAGCAAGGAG ATAGACAGGTTCCTCCAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig89:51840..56410+

>mRNA_Ecto-sp6_S_contig89.17913.1 ID=mRNA_Ecto-sp6_S_contig89.17913.1|Name=mRNA_Ecto-sp6_S_contig89.17913.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1110bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:51840..56410+ (Ectocarpus species6 EcLAC_371)
ATGTCCTACGGCATCACAGCTGTCAACCACATGCATGCAACATTGCTGCT
CGGATCAATCGCTGTCTCCTCTCTTTGCACCGCCGCTGTTGAGCTCTCGG
TAGTCCGGCGTGCCGCGTTTGCTACCGCCTCACCGCCGGCCCCCCGTTCG
ACAACGATGCCCCCAAAAACGAAGAAGCGATCATCTGTAGCAGCAGGGCT
GGCGCCTGCTGCTGACAGGAAGGCTGGAGACAGCAGCTGCAGCAGCAGAG
CAACAAAGCAAGGACGGCGATTGAAAGCTGAAGGAGGAAATGCTGGCGCG
GAGGCTGGTGGACCAACCCTTGTGTCGTGTGGGGACGAGCTGGTGCGAAT
ATCGCGCCGCCTTCATGACAGTCTCAAAGACCGGAAGTGGAAGGGCACCA
GCAAGCAGCCGGTGTCATGCTCGTACAACGTCCTCGAGTACGCCTCAGAG
ACAAACGAGGCCTACACGCAGCGGTACGGCGGGGGGCGGCCATTCGGAAG
GGCGTTCGTTGTGGGCATGAACCCGGGGCCATGGGGTATGGTGCAAACGG
GAGTCCCCTTCGGCGAAGTCGGATTTGTTCGGGACTGGCTGAAGGTACAG
GGGGCAGTCGGTCGGCCGAGCAAGGAACACGCCAAACGACCGGTGCATGG
CTTCGACTGCCAGCGCAGCGAGGTCAGCGGGACCCGTCTATGGGGCTTTT
TCGAACGGAGATTCGGAACGGCGGACGCATGGGGAGACAAAATGTTCGTG
TACAACTTCTGCCCTCTGACTTTCATGAGCTCTTCGGGAGGCAACATCAC
CCCGGACAAGCTGACGCCCGCAGAGCGAGAAGTCATCGACGAGGCTTGCG
GCGAAGCCCTTGCGGAGATGATCTCGGCGCTGAAACCGTCCGTGGTCGTC
GCCGTCGGCAACTTCGCGGGGTCCAAGTGCCATGAGGCGGTGAAGGCGTC
CGGGCTCAACGCCGCAGGAAAGGGCGAGGTTGAAGTTGTCGTGGTGAACC
ACCCGAGCCCCGCCAGCCCCACGGGGGTGAAGTGGGAGAAGGCGACGTGC
TTGAACGAGCTCGTGCTCAACAGCAGCAAAAGCAAGGAGATAGACAGGTT
CCTCCAGTGA
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