mRNA_Ecto-sp6_S_contig89.17911.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig89.17911.1
Unique NamemRNA_Ecto-sp6_S_contig89.17911.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig89.17911.1 vs. uniprot
Match: D8LKH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH3_ECTSI)

HSP 1 Score: 345 bits (884), Expect = 9.470e-120
Identity = 176/181 (97.24%), Postives = 180/181 (99.45%), Query Frame = 1 
Query:    1 MNHQEAYRYTAGKGNFEAVKRTLLEKEDALRKGTGSFLMADTIQRFRSSSEGRPPTSELSARRGSQRRRAAAKRAMVPIESDPFQCGGYNSDKLKREETRRQDLLVHAKGRNNMFCRRKGYEPGDFLKHRSPPGGQDFDSGAASCRRGSVGGAIGARKGGARSAEAAAMAAEARRKAHQHL 543
            MNHQEAYRYTAGKGNFEA KRTLLEKEDALRKGTGSFLMADTIQRFRSSSEGRPPTS+LSARRGSQRRRAAAKRAMVPIESDPFQCGGYNS+KLKREETRRQDLLVHAKGRNNMFCRRKGYEPGDFLKHRSPPGGQDF+SGAASCRRGSVGGAIGARKGGARSAEAAAMAAE+RRKAHQHL
Sbjct:    1 MNHQEAYRYTAGKGNFEAEKRTLLEKEDALRKGTGSFLMADTIQRFRSSSEGRPPTSDLSARRGSQRRRAAAKRAMVPIESDPFQCGGYNSEKLKREETRRQDLLVHAKGRNNMFCRRKGYEPGDFLKHRSPPGGQDFNSGAASCRRGSVGGAIGARKGGARSAEAAAMAAESRRKAHQHL 181
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig89.17911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKH3_ECTSI9.470e-12097.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig89contigEcto-sp6_S_contig89:35237..37767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size546
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_002960.1
Cds size546
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350507.4808772-CDS-Ecto-sp6_S_contig89:35236..352751682350507.4808772-CDS-Ecto-sp6_S_contig89:35236..35275Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 35237..35275 +
1682350507.4891827-CDS-Ecto-sp6_S_contig89:35511..355861682350507.4891827-CDS-Ecto-sp6_S_contig89:35511..35586Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 35512..35586 +
1682350507.4984004-CDS-Ecto-sp6_S_contig89:36090..361971682350507.4984004-CDS-Ecto-sp6_S_contig89:36090..36197Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 36091..36197 +
1682350507.509505-CDS-Ecto-sp6_S_contig89:36619..367571682350507.509505-CDS-Ecto-sp6_S_contig89:36619..36757Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 36620..36757 +
1682350507.5181556-CDS-Ecto-sp6_S_contig89:37580..377671682350507.5181556-CDS-Ecto-sp6_S_contig89:37580..37767Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 37581..37767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig89.17911.1prot_Ecto-sp6_S_contig89.17911.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig89 35237..37767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig89.17911.1

>prot_Ecto-sp6_S_contig89.17911.1 ID=prot_Ecto-sp6_S_contig89.17911.1|Name=mRNA_Ecto-sp6_S_contig89.17911.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=182bp
MNHQEAYRYTAGKGNFEAVKRTLLEKEDALRKGTGSFLMADTIQRFRSSS
EGRPPTSELSARRGSQRRRAAAKRAMVPIESDPFQCGGYNSDKLKREETR
RQDLLVHAKGRNNMFCRRKGYEPGDFLKHRSPPGGQDFDSGAASCRRGSV
GGAIGARKGGARSAEAAAMAAEARRKAHQHL*
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mRNA from alignment at Ecto-sp6_S_contig89:35237..37767+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig89.17911.1 ID=mRNA_Ecto-sp6_S_contig89.17911.1|Name=mRNA_Ecto-sp6_S_contig89.17911.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2531bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:35237..37767+ (Ectocarpus species6 EcLAC_371)
ATGAACCACCAGGAGGCCTACCGTTACACTGCCGGCAAGGTGCGTACTCA
TGCAACCTTGTGGAAGTTAGTTAGGACGACGCGAGTCAACCGGCAAGAAC
GTTTCCTTAACGTAATCGCTCCTTGCTGTTGTCTGAACGCTTTGCCCCGC
GATAAAAGCCTGCAACCCTCGTAATGATTTGCGAACGCGTGCTTCACGCT
GCTAGTCGTTATTCTTGTGGCCGCTGCTCTGCTCGTTTTTTTTCTCCATT
TTTCGTGTCGGATGCCAACACTCAGGGAAACTTCGAGGCGGTAAAACGCA
CCCTTCTAGAGAAGGAAGACGCTCTGAGAAAAGGGACGGGTTCTTTTCTG
GTGAGAGTCAACCTCCCGCCTTAGCAAGGTACTGCCAACGATGTCCGATG
CAAAGTACCAGTGAAATCATGACGCATGCCCTACCGAAATCTTGTTGCTT
TTGAGCTTGGATTGGGTAACGCGGGGTGATGTTTTCGGAGGCACGGCACA
AGAAGATTTTTTTTCCTTGAAGACACGCGCCGAATCTTTCTTGGTTCTGA
TGCCCCCTGCGCGCTCCTCCGAATGCACGAGAAAAGCGGTTCTTAAGACT
GATTGGAGGCAGATGGTGCGCGTTACCCGTCGACACGCATCGACGCACGC
AACGAGATCGGCCCTATCTGTGGACGTTCCCCGATAATTATCGCACAGGC
ATCAGTAATGTCAGTTATTCTACGAGATCGAGCTACTCTCCTTCCGAACA
AAATAGAACAGAACCATCGTCGAGCGACAAACCCTGCCGCTTTCAAGGTC
TTAATGTGACTCCGTTCACCTCTGGCTGCCAACGTCTATACTTTGGGGTG
GCAGATGGCAGACACGATCCAACGGTTTAGAAGCAGCTCGGAGGGGAGAC
CACCGACATCCGAACTCTCGGCCAGAAGAGGTTCGCAGAGAAGACGAGCG
GCGGCCAAAAGGTGTAAACTCTATCTGTTAGTACTTTCCACATCACCGGA
TGGTTATTTCCAGCAGTTTGAAGTTAATTTCCAAGACAGGATAACACTCT
CCCAAACATCCATCCTTCGACGACGACTTGCCTCGCACCATATCGACTTA
AGCGTTGCGGGTGGCAAGCACTGTGCTCGCACCGTACCGGATTTCTATTT
TCCATCCGTCGTCCGCATAGGAAGCGACGTACGCATACCTGTTGGAGCAT
TTTCAGTGCTTGCTCACAACGACGATTTCCATCGGTCGGCTTATGACCGC
TCGACCGCCATGCTCGACCCCCAACATTTGAACCATCTTGCAAGCGTCTC
CCCAAGTGAGCAACCTCTATATCCCCTACCCGCGCGTGTTCCCCAACATG
TGCGCCTCTTGCTCTCCGAAAATCTTCTTGCAGGGCGATGGTGCCCATCG
AGTCAGACCCCTTTCAGTGCGGTGGGTACAACAGCGACAAGCTCAAGCGG
GAAGAGACGAGGCGCCAAGACTTGCTCGTTCACGCCAAGGGCAGGAACAA
CATGTTTTGTAGGCGGAAAGGGTGAGAAACGGGGACGGGGGGGGGGGCAT
AAAACCATCGAAGGGAACAGAGGGGCGCGTGGGATGTAGCGATACACTTA
CAAAGAAGTTAGGTAGTTGCGCTCAACCGAACGCACGACTTCCCTAACCT
TTGGCCACCGGAATGTCCTCCCTCAGGCAACTATTGCTGCGTGACAAAAA
CGCCCCTGAAACGATCACTCGAAGGATTACTCCAACATAACACCAACTCT
TCGAAGATAGGAGAGGCACGAAAAGCCCTCATGAGCTCGTCTATGCTAAG
TTTGTTTCAAGAGGGAAGAAGGAGGGGGGCTACATGAAACGCGCAACACC
ATCACCATACAATATATACTCCACACCACTTGACTCATCGCGGTGAGCGA
GCGCGCGAGCGGCAACGTGGGGTCCGTCGGTAAGGTAGTGGTCTTGCGGT
CGACTCGGATGTTGGCACTTAGTTGATTTCTCGTTTTTCTGGCGTAGTGC
CCTTTTCAAGACACACGCTGTACGACACTCCGGAAGTTGTCTTCCAGGGA
GAAGAGGCACATGACCTCTTGCTTCTTGTTTAAGGCTAACCGTCTAAGTT
TCTTGCCTTCCGAGTGACAACCCGTCTACCTGGCTACCAAAAATGGTCTT
AGAGATACAGGCAGGCGTTGAGCAACTGGCAAACAACGAGAGTACTCTTG
CGCGGCATGGCTCTCATCTGTGTTGCCACTCCCTCGGGTGCACTGCGTTC
ACAACTCCCAGTGGCGTCTGCCATTGCCCCATCTTACCCAACCCCCGTCA
CCCCGTCTCTTCGAACGAAAACGTCCGACCGCTGTCGCGGGCAGCTACGA
GCCGGGCGATTTTCTGAAGCACCGGTCGCCACCGGGCGGACAGGACTTCG
ACAGCGGCGCCGCGAGCTGCAGAAGAGGCAGCGTCGGTGGCGCCATTGGT
GCCAGGAAGGGCGGCGCCCGGTCTGCTGAGGCTGCCGCCATGGCCGCCGA
AGCGCGCCGAAAAGCACACCAACACTTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig89:35237..37767+

>mRNA_Ecto-sp6_S_contig89.17911.1 ID=mRNA_Ecto-sp6_S_contig89.17911.1|Name=mRNA_Ecto-sp6_S_contig89.17911.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:35237..37767+ (Ectocarpus species6 EcLAC_371)
ATGAACCACCAGGAGGCCTACCGTTACACTGCCGGCAAGGGAAACTTCGA
GGCGGTAAAACGCACCCTTCTAGAGAAGGAAGACGCTCTGAGAAAAGGGA
CGGGTTCTTTTCTGATGGCAGACACGATCCAACGGTTTAGAAGCAGCTCG
GAGGGGAGACCACCGACATCCGAACTCTCGGCCAGAAGAGGTTCGCAGAG
AAGACGAGCGGCGGCCAAAAGGGCGATGGTGCCCATCGAGTCAGACCCCT
TTCAGTGCGGTGGGTACAACAGCGACAAGCTCAAGCGGGAAGAGACGAGG
CGCCAAGACTTGCTCGTTCACGCCAAGGGCAGGAACAACATGTTTTGTAG
GCGGAAAGGCTACGAGCCGGGCGATTTTCTGAAGCACCGGTCGCCACCGG
GCGGACAGGACTTCGACAGCGGCGCCGCGAGCTGCAGAAGAGGCAGCGTC
GGTGGCGCCATTGGTGCCAGGAAGGGCGGCGCCCGGTCTGCTGAGGCTGC
CGCCATGGCCGCCGAAGCGCGCCGAAAAGCACACCAACACTTGTAG
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