mRNA_Ecto-sp6_S_contig87.17810.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig87.17810.1
Unique NamemRNA_Ecto-sp6_S_contig87.17810.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig87.17810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig87contigEcto-sp6_S_contig87:334224..334836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size182
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_001610.1
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350496.610788-CDS-Ecto-sp6_S_contig87:334223..3342761682350496.610788-CDS-Ecto-sp6_S_contig87:334223..334276Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 334224..334276 -
1682350496.631297-CDS-Ecto-sp6_S_contig87:334709..3348361682350496.631297-CDS-Ecto-sp6_S_contig87:334709..334836Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 334710..334836 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig87.17810.1prot_Ecto-sp6_S_contig87.17810.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig87 334224..334836 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig87.17810.1

>prot_Ecto-sp6_S_contig87.17810.1 ID=prot_Ecto-sp6_S_contig87.17810.1|Name=mRNA_Ecto-sp6_S_contig87.17810.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=60bp
VGFGSAFRHCPAACPLVRPRAVRPAGAAERIDRGISREGKQTDTNNTCIQ
ELSTCVWKN*
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mRNA from alignment at Ecto-sp6_S_contig87:334224..334836-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig87.17810.1 ID=mRNA_Ecto-sp6_S_contig87.17810.1|Name=mRNA_Ecto-sp6_S_contig87.17810.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=613bp|location=Sequence derived from alignment at Ecto-sp6_S_contig87:334224..334836- (Ectocarpus species6 EcLAC_371)
GTTGGTTTTGGTTCCGCCTTCCGTCATTGTCCCGCCGCTTGTCCGCTTGT
CCGCCCCCGCGCTGTCCGCCCAGCAGGAGCAGCGGAGAGGATAGATAGAG
GAATATCGAGAGAGGGCAAGCAAACAGGTGAGGCTTGCCCGTGTGTAGAA
TCGCATTGAGCTGCTGTACCATTTGCCGAAGGTTGCCCTGGGTAGGAGGT
ATCGAATGTTTGCATAAGATACCACTCCCCCCCGAACCGAGTCAAGGCTC
TCGATTTCCAACTGATGAAGCAGAGAAGATGCCACAGCACACAGCAGTCA
AATTACACGTTCGGAAAGCTCTCGACGAGAGGGTTCCGTTGCTGCCGTTT
CGGCACTCGGTACCGTAACTGCTGTCTCCGCTGCAGAGTACTCGAGGTCT
GCCAATCGGTCCTGAGGTATGGGTGGTATCTCAACCTCAACCTTGCGTCG
TAGCGTGATCCGTGATTCGTGATTCATTCGTGACGTGACCTTTGAAGTAC
GATATTTACACTTAAAATAGTACAATCGATTTTTAATCCTCTTTCGTTTC
CACCGCGAAGACACCAACAACACATGCATACAAGAGCTCTCGACTTGTGT
ATGGAAAAATTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig87:334224..334836-

>mRNA_Ecto-sp6_S_contig87.17810.1 ID=mRNA_Ecto-sp6_S_contig87.17810.1|Name=mRNA_Ecto-sp6_S_contig87.17810.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp6_S_contig87:334224..334836- (Ectocarpus species6 EcLAC_371)
GTTGGTTTTGGTTCCGCCTTCCGTCATTGTCCCGCCGCTTGTCCGCTTGT
CCGCCCCCGCGCTGTCCGCCCAGCAGGAGCAGCGGAGAGGATAGATAGAG
GAATATCGAGAGAGGGCAAGCAAACAGACACCAACAACACATGCATACAA
GAGCTCTCGACTTGTGTATGGAAAAATTGA
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