mRNA_Ecto-sp6_S_contig87.17808.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig87.17808.1
Unique NamemRNA_Ecto-sp6_S_contig87.17808.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17808.1 vs. uniprot
Match: D7FZB6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB6_ECTSI)

HSP 1 Score: 422 bits (1085), Expect = 3.650e-140
Identity = 195/200 (97.50%), Postives = 197/200 (98.50%), Query Frame = 1 
Query:    1 QACCLICVKDDPVPGSKLDAFYGNPNQFQIGMMEAPCKNCPWFCFGCLCTCCAQFIVRKRALDGNLENYLCCQGYYPMCCMSAGDCGERSCPCFCLCLESFCCNSCAVSSSRMYLMDKFSVTPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADIVYMTTVGCMTGQMIYEMDYQASVAPKAQAIAGR 600
             ACCLICVKDDPVPGSKLD FYGNPNQFQIG+MEAPCKNCPWFCFGCLCTCCAQFIVRKRALDGNLENYLCCQGYYPMCCMSAGDCGERSCPCFCLCLESFCCNSCAVSSSRMYLMDKFSV PDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIAD+VYMTTVGCMTGQMIYEMDYQASVAPKAQAIAGR
Sbjct:    1 MACCLICVKDDPVPGSKLDPFYGNPNQFQIGLMEAPCKNCPWFCFGCLCTCCAQFIVRKRALDGNLENYLCCQGYYPMCCMSAGDCGERSCPCFCLCLESFCCNSCAVSSSRMYLMDKFSVMPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADLVYMTTVGCMTGQMIYEMDYQASVAPKAQAIAGR 200
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17808.1 vs. uniprot
Match: D7FZB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB5_ECTSI)

HSP 1 Score: 333 bits (854), Expect = 5.650e-106
Identity = 149/177 (84.18%), Postives = 160/177 (90.40%), Query Frame = 1 
Query:    1 QACCLICVKDDPVPGSKLDAFYGNPNQFQIGMMEAPCKNCPWFCFGCLCTCCAQFIVRKRALDGNLENYLCCQGYYPMCCMSAGDCGERSCPCFCLCLESFCCNSCAVSSSRMYLMDKFSVTPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADIVYMTTVGCMT 531
             ACCLICV D+PVPGSKLDA+Y NPN+FQIGMMEAPCKNCPW  FGCLC CCAQFIVRKRALDGNL NY+CCQGY+PMCC   GDCGER CPCFCLC+ESF C SCAVSSSRMYLMDKF V PDPWDNRIIRFNN LQ+LSCIC+IAAIC+ E+RELARIIDLIAD+VYMTTVGCMT
Sbjct:    1 MACCLICVNDEPVPGSKLDAYYENPNKFQIGMMEAPCKNCPWCTFGCLCMCCAQFIVRKRALDGNLANYVCCQGYFPMCCFEPGDCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPDPWDNRIIRFNNALQVLSCICHIAAICVREVRELARIIDLIADLVYMTTVGCMT 177
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17808.1 vs. uniprot
Match: D7FZB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZB7_ECTSI)

HSP 1 Score: 315 bits (807), Expect = 1.720e-98
Identity = 144/200 (72.00%), Postives = 166/200 (83.00%), Query Frame = 1 
Query:    1 QACCLICVKDDPVPGSKLDAFYGNPNQFQIGMMEAPCKNCPWFCFGCLCTCCAQFIVRKRALDGNLENYLCCQGYYPMCCMSAGDCGERSCPCFCLCLESFCCNSCAVSSSRMYLMDKFSVTPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADIVYMTTVGCMTGQMIYEMDYQASVAPKAQAIAGR 600
             ACCLICVKDDPVPGSKLDA+YGNPNQFQIGMMEAPCK   W  +G LC  CAQF VRKRAL G L++Y+CCQGY+P  C   GDCGER CPCFCLC+ESF C SCAVSSSRMYLMDKF V PDPWDNRIIRFNN LQLLSCIC+ AAI +++ RELAR+ D++A++VY++ VGCMTGQM+ EM+YQ   +P+AQ I GR
Sbjct:    1 MACCLICVKDDPVPGSKLDAYYGNPNQFQIGMMEAPCKTFLWCAYGSLCLGCAQFAVRKRALGGRLDDYVCCQGYFPTHCCEPGDCGERRCPCFCLCMESFLCPSCAVSSSRMYLMDKFEVQPDPWDNRIIRFNNCLQLLSCICHCAAIFVQDFRELARLTDVLANLVYLSAVGCMTGQMMAEMEYQEGTSPEAQCITGR 200
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17808.1 vs. uniprot
Match: A0A835YWZ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWZ0_9STRA)

HSP 1 Score: 310 bits (794), Expect = 6.600e-97
Identity = 143/198 (72.22%), Postives = 167/198 (84.34%), Query Frame = 1 
Query:    1 QACCLICVKDDPVPGSKLDAFYGNPNQFQIGMMEAPCKNCPWFCFGCLCTCCAQFIVRKRALDGNLENYLCCQGYYP-MCCMSAGDCGERSCPCFCLCLESFCCNSCAVSSSRMYLMDKFSVTPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADIVYMTTVGCMTGQMIYEMDYQASVAPKAQAI 591
             ACCLIC  D+PV GSKL+ FYGN  QFQIGMMEAPCK     C+G LC+CCAQ+ VRKRALDGNL+NY+CCQGY+P  CCM  G CGE+S P  CLCLESFCC SCAVSSSRM++MDK+ + PDPWDNRIIRFNN LQLLSCICN  AIC+EE+RE ARI+DLIA+IV+ TTVGCMTGQM++E+DYQ ++APKA+AI
Sbjct:    1 MACCLICFSDEPVRGSKLEQFYGNNQQFQIGMMEAPCKATLCCCYGSLCSCCAQYTVRKRALDGNLDNYICCQGYFPGCCCMKPGHCGEKSSPACCLCLESFCCLSCAVSSSRMFIMDKYRLLPDPWDNRIIRFNNALQLLSCICNCLAICVEELREFARILDLIAEIVFYTTVGCMTGQMMHELDYQQNMAPKAEAI 198
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17808.1 vs. uniprot
Match: A0A7S2UXW4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXW4_9STRA)

HSP 1 Score: 204 bits (519), Expect = 9.180e-57
Identity = 97/190 (51.05%), Postives = 127/190 (66.84%), Query Frame = 1 
Query:    1 QACCLICVKDDPVPGSKLDAFYG-NPNQFQIGMMEAPCKNCPWFCFGCL-CTCCAQFIVRKRALDGNLENYLCCQGYYPMCCMSAGDCGERSCPCFCLCLESFCCNSCAVSSSRMYLMDKFSVTPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADIVYMTTVGCMTGQMIYEMDYQA 564
              CCL+C  DDP+ G K    YG NPN FQ+ + +A C   P  C G   C CCAQ+ +RK+AL+ ++ NY CCQGYY   C  AG+ GE SCP  CLCLE++CC SCAVSS+RM +MD + +  DPWD RIIRFNNF Q+LSC+C I A+    +++ A +I LIA+ VY +   CMT Q+ +E+ YQA
Sbjct:    1 MVCCLLCFSDDPIEGDK----YGQNPNTFQVSLKDAACAE-PACCIGTFFCPCCAQYYIRKKALNDDMSNYTCCQGYYDCACFKAGNLGESSCPELCLCLEAYCCESCAVSSTRMLVMDTYMLASDPWDRRIIRFNNFCQVLSCVCQILAMVEPSLQDCAELIRLIAECVYYSVQACMTSQVHHELKYQA 185
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17808.1 vs. uniprot
Match: A0A7S2UXX8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXX8_9STRA)

HSP 1 Score: 202 bits (514), Expect = 3.590e-56
Identity = 100/185 (54.05%), Postives = 124/185 (67.03%), Query Frame = 1 
Query:   10 CLICVKDDPVPGSKLDAFYGNPNQFQIGMMEAPCKNCPWFCFGCLCTC-CAQFIVRKRALDGNLENYLCCQGYYPMCCMSAGDCGERSCPCFCLCLESFCCNSCAVSSSRMYLMDKFSVTPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADIVYMTTVGCMTGQMIYEMDYQ 561
            C IC  D P+ G K   F    N FQ+ M + PC+  P  C G    C CAQ++VRK+ALDG++ NY CCQGYY   C  AG CGE SCP  CLCLE+  CNSCAVSS+RM +MD + +  DPWD RIIRFNN +Q+LSCIC+IAAI    +R+ A +ID IAD VY +   CMT Q+ +E+DYQ
Sbjct:    3 CCICFDDGPIEGDKYGQF---SNTFQLSMADVPCQQ-PACCLGAFFCCPCAQYMVRKKALDGDMTNYKCCQGYYDCLCFKAGHCGEESCPDVCLCLEAVFCNSCAVSSTRMLVMDTYFLQSDPWDRRIIRFNNCMQMLSCICHIAAIIDPSLRDCAVLIDRIADCVYYSVQACMTAQVNFELDYQ 183
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17808.1 vs. uniprot
Match: A0A2R5GIB4_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GIB4_9STRA)

HSP 1 Score: 195 bits (496), Expect = 2.500e-53
Identity = 95/191 (49.74%), Postives = 129/191 (67.54%), Query Frame = 1 
Query:    4 ACCLICVKDDPVPGSKLDAFYGNPNQFQIGMMEAPCKNCPWFCFGCLCTCCAQFIVRKRALDGNLENYLCCQGYYPMCCMSAGDCGERSCPCFCLCLESFCCNSCAVSSSRMYLMDKFSVTPDPWDNRIIRFNNFLQLLSCICNIAAICIEEI-----RELARIIDLIADIVYMTTVGCMTGQMIYEMDYQ 561
            ACC  C  DDPV     D    + N++++ M +AP +   W C+G  C  CA + +R RAL  N+ NY CCQGY   CC+S G+ GE +CP FCLC+E  CC SC++S++R  +MD++S+  DP DNRIIRFNNF+Q+LSC+ N+ +ICIEE+     RE A+I+DLIA IVYM T GCM  QM  EM+++
Sbjct:    6 ACCF-CFPDDPVED---DPRIQHANRWKVLMKDAPTEETLWCCYGAFCPVCAAYQLRTRALGYNMNNYRCCQGYLQFCCISPGNMGEENCPEFCLCMEVCCCLSCSISATRFMIMDQYSIVSDPCDNRIIRFNNFMQILSCVLNLLSICIEELYVRIFREAAQIVDLIAKIVYMVTFGCMAAQMKSEMEFR 192
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17808.1 vs. uniprot
Match: A0A484EEY5_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EEY5_BRELC)

HSP 1 Score: 191 bits (484), Expect = 2.550e-52
Identity = 94/184 (51.09%), Postives = 125/184 (67.93%), Query Frame = 1 
Query:   10 CLICVKDDPVPGSKLDAFYGNPNQFQIGMMEAPCKNCPWFCFG-CLCTCCAQFIVRKRALDGNLENYLCCQGYYP--MCCMSAGDCGERSCPCFCLCLESFCCNSCAVSSSRMYLMDKFSVTPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADIVYMTTVGCMTGQMIYEM 552
            C++C   DPV     D    NP  FQ+GMM AP  + P  C   CLC CCAQ ++R++AL+ ++ NY CCQGY    + C  +G CGE SCP FCLCLESFCCN CAVS++RM +MD++ + PD WDNRIIR NN +QL+SC+C++ +ICI E+ +LA ++  IA   Y TT GCMT Q+  E+
Sbjct:    2 CILC-SGDPVED---DVRKNNPGSFQVGMMHAPGAD-PLCCMSACLCPCCAQIVIRRKALNYDMSNYTCCQGYMDGLVPCARSGQCGESSCPNFCLCLESFCCNGCAVSATRMLVMDRYRLQPDKWDNRIIRCNNCIQLVSCVCSLLSICISELGDLADLMYCIAQCTYATTQGCMTAQVNVEL 180
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17808.1 vs. uniprot
Match: A0A7S2V0P2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0P2_9STRA)

HSP 1 Score: 185 bits (470), Expect = 5.550e-50
Identity = 93/198 (46.97%), Postives = 126/198 (63.64%), Query Frame = 1 
Query:    1 QACCLICVKDDPVPGSKLDAFYGN-PNQFQIGMMEAPCKNCPWFCFG-CLCTCCAQFIVRKRALDGNLENYLCCQGYYPMCCMSAGDCGERSCPCFCLCLESFCCNSCAVSSSRMYLMDKFSVTPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADIVYMTTVGCMTGQMIYEMDYQAS--VAPKA 582
             ACCL C  DDP+ G K    YG+  N FQ+ M +A C+  P  C   C C  CAQ+I+R++AL+G++ NY CCQGYY   C  +G CGE SCP  CLC E+  CNSCAVSS+R  +MD + +  DP D R+IR NN +Q L+C C+I AIC  E R+ A+ +D  A+  Y +   CMT Q+ +E+DYQ +  + P+A
Sbjct:    1 MACCLTCFSDDPIEGDK----YGHYSNTFQLSMKDATCQE-PGCCLASCFCPPCAQYIIRQKALEGDMSNYRCCQGYYDEACFKSGSCGESSCPEVCLCFEATFCNSCAVSSTRRLVMDTYLLQSDPCDRRLIRLNNCIQCLTCPCHILAICDPEFRDCAQPVDYCANCFYYSVAACMTTQVNFEIDYQKAKPIGPEA 193
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17808.1 vs. uniprot
Match: A0A024G979_9STRA (Uncharacterized protein n=3 Tax=Albugo candida TaxID=65357 RepID=A0A024G979_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.530e-49
Identity = 94/194 (48.45%), Postives = 126/194 (64.95%), Query Frame = 1 
Query:   10 CLICVKDDPVPGSKLDAFYGNPNQFQIGMMEAPCKNCPWFCFG-CLCTCCAQFIVRKRALDGNLENYLCCQGYYP--MCCMSAGDCGERSCPCFCLCLESFCCNSCAVSSSRMYLMDKFSVTPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADIVYMTTVGCMTGQMIYEM----DYQASV 570
            C++C    PV G   D    N N+F +GMM APC + P  C   C C CCAQ+I+R++ALD ++  Y+C QGY    + C+ +G CGERSCP  CLCLES+ CN CAVS++RM +MD++++ PD WDNRIIR NN +QLLSC+C+  AICI E+          A   YMTT GCMT Q+  E+    +Y+A+V
Sbjct:    2 CILC-SGSPVDG---DVRGQNSNEFMVGMMSAPCSS-PCCCLASCFCPCCAQYIIRRKALDNDMSKYVCFQGYLDGVIPCLRSGQCGERSCPHCCLCLESWLCNGCAVSATRMLVMDRYNLRPDKWDNRIIRCNNCIQLLSCVCSCLAICISELGNXXXXXXXXAQCTYMTTQGCMTAQVNVELKRRKNYRAAV 190
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig87.17808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZB6_ECTSI3.650e-14097.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FZB5_ECTSI5.650e-10684.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FZB7_ECTSI1.720e-9872.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YWZ0_9STRA6.600e-9772.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UXW4_9STRA9.180e-5751.05Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2UXX8_9STRA3.590e-5654.05Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2R5GIB4_9STRA2.500e-5349.74Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
A0A484EEY5_BRELC2.550e-5251.09Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A7S2V0P2_9STRA5.550e-5046.97Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A024G979_9STRA1.530e-4948.45Uncharacterized protein n=3 Tax=Albugo candida Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig87contigEcto-sp6_S_contig87:319415..325474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score176.8
Seed ortholog evalue8.6e-42
Seed eggNOG ortholog4792.ETI46731
Model size2559
Hectar predicted targeting categorysignal peptide
Exons6
EggNOG OGs2BWTM@1,2S2DX@2759,3QDY9@4776
Cds size510
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig87.17808.1prot_Ecto-sp6_S_contig87.17808.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig87 319508..323518 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350496.3984032-UTR-Ecto-sp6_S_contig87:319414..3195071682350496.3984032-UTR-Ecto-sp6_S_contig87:319414..319507Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig87 319415..319507 +
1682350496.454998-UTR-Ecto-sp6_S_contig87:323518..3254741682350496.454998-UTR-Ecto-sp6_S_contig87:323518..325474Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig87 323519..325474 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350496.407709-CDS-Ecto-sp6_S_contig87:319507..3195381682350496.407709-CDS-Ecto-sp6_S_contig87:319507..319538Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 319508..319538 +
1682350496.4158118-CDS-Ecto-sp6_S_contig87:320368..3204761682350496.4158118-CDS-Ecto-sp6_S_contig87:320368..320476Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 320369..320476 +
1682350496.4236906-CDS-Ecto-sp6_S_contig87:321102..3212051682350496.4236906-CDS-Ecto-sp6_S_contig87:321102..321205Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 321103..321205 +
1682350496.431606-CDS-Ecto-sp6_S_contig87:321749..3218071682350496.431606-CDS-Ecto-sp6_S_contig87:321749..321807Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 321750..321807 +
1682350496.4394758-CDS-Ecto-sp6_S_contig87:322672..3228101682350496.4394758-CDS-Ecto-sp6_S_contig87:322672..322810Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 322673..322810 +
1682350496.4473183-CDS-Ecto-sp6_S_contig87:323446..3235181682350496.4473183-CDS-Ecto-sp6_S_contig87:323446..323518Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 323447..323518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig87.17808.1

>prot_Ecto-sp6_S_contig87.17808.1 ID=prot_Ecto-sp6_S_contig87.17808.1|Name=mRNA_Ecto-sp6_S_contig87.17808.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=170bp
MMEAPCKNCPWFCFGCLCTCCAQFIVRKRALDGNLENYLCCQGYYPMCCM
SAGDCGERSCPCFCLCLESFCCNSCAVSSSRMYLMDKFSVTPDPWDNRII
RFNNFLQLLSCICNIAAICIEEIRELARIIDLIADIVYMTTVGCMTGQMI
YEMDYQASVAPKAQAIAGR*
back to top

mRNA from alignment at Ecto-sp6_S_contig87:319415..325474+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig87.17808.1 ID=mRNA_Ecto-sp6_S_contig87.17808.1|Name=mRNA_Ecto-sp6_S_contig87.17808.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6060bp|location=Sequence derived from alignment at Ecto-sp6_S_contig87:319415..325474+ (Ectocarpus species6 EcLAC_371)
CAGGCGTGCTGCTTGATCTGCGTGAAGGATGACCCCGTGCCGGGCTCGAA
GCTCGACGCCTTCTACGGAAACCCCAACCAGTTCCAGATCGGAATGATGG
AGGCACCGTGCAAGAACTGCCCCTGTGAGTTTACGTTGAGGGGGTTATTT
TCTTCACGAATGAAGGTCTGTCGCTCAAGAAAAAAAAACTCTATCGGAAA
GTAGTAGATCATCTCAGGTCCCATGATGATGGATGAAGTCGAGTCTGCTC
CTGCAAAGGTTGCTTTCCACGCGGATCGTGTTGGTGCACGTCGCATAGAG
CAGTTCCATGAGGAATGTTGTAGGCTGAACGAACTTGTCTCTGGTGCAGC
TGCTCTGGTGTAGCTGGGAGGGTAGAGGTCCGGCAGCGTGCTTGGATGCG
GCGAGCACTTCGATACTGCAGGACGACTTTTTCGCCGCAACTTGATTGTC
TTTGGTGCCGCGCTCGCCCCAACTTGGTGGATCAAAAGGGAATCCCCCCA
CGCCCCATATCCGTGTGTCGCGCAACCCGTCTACCTCTCCTACCAGTAGG
GCTCGCGAGGATGGTAAGCTTGGTTTTGATAGGGGGTACTGTTAATGTTG
AAGGGATAAGGATACGAACCCCCCCTCTGTCGTATTGGAAGTACAGATCA
ACAATAATTTTCTCGCGAAGGCGGTTCTCTTCCGAGAATATATTGTGTTC
CACGTCCTTGGCTTTCCGCCCGCGCTGCGAATTGCCATTAGCTAAGTTGC
CGTCGACTAGTGTGTGCCTCGTCGAACAAAGCCTGTGAACATGTTGCATG
ATGTGTATCACCCACCCCCCTCACTGTCTCCTTGCCTCCTTGTGGTTTTG
CGTTGCGCTTGGTGTCGCCCTACGAATGTCGCGTTCTCTCTCTCTTGTGT
GTGTATGTGTGTGTGTGTGTGTTGATGTGTGTGTGCGTTTTTCGTGCCGG
ACAGGGTTTTGCTTCGGCTGCCTGTGCACGTGCTGCGCGCAGTTCATCGT
CAGGAAGAGGGCCCTCGACGGAAACCTCGAGAACTACTTATGCTGTCAGG
GCTACTATCCAAGTGAGTCGACAAAAGAAGAGACCAATCCAAGTGCTTGA
GAGCGCCTCTCCGTATTTGCCGATTGAAGAAAATAAGAAAATGTGTCGTG
TCGTGATTCAACCTAAAGGTACATGTGTATGGAGTTATCGACTGCCGTTT
GTTATTGGCGTTTTTCCCGGCGCCTTTTCTGTGCTGGTCGGAGGTACGTA
CTTGGAGGTAGTGTTTTTGTATGTTTACGGATGTTTTTTCATGAAAGAAC
GAAGCCACGTTCTCCGGGAGAATCGGAACACCACCTGTAATAGACGTTGC
TGACCTTTCTCCCATCCCGTTGCGCATATACACCGCAAAGAACGAGGGTA
CGCAGCTGGCACGTCCGTTCCTTGACCCATGTCCAATGCGTCATTTTGTT
GTCCTGACCTAGGCTGACATGCTTGCTCTCAGAGCTCTTTACTCCCTTAT
TTTTGCTGTTGTTGGTTGTTTGCTGGCGCTTGCTATGGTCGTCGGGTGTT
GATGCTAATACTTATCGCCACTGTTTTTAACATGTGGTCTTTGTAGCCTT
TGCCGCCCTTTGTTTTTCACAGCTTTCTCAACAGCTTTTGTCAGGTCTCT
TGATGATGACCTCTGTCGCCGTTGCTTTTCTGGAACAGTGTGCTGTATGA
GCGCGGGCGACTGCGGGGAGAGAAGCTGCCCGTGTTTCTGCCTCTGTTTG
GAGTCGTTCTGTTGCAACAGCTGTGCTGTCAGCTCCAGCAGGTGAGCGCA
CCCTTAATAACATGTGTCTTGATGCAATGATTGGGCGGGCAGGGGGGGGG
GGCGTACTCTTATGTTTTGCATGCCTTGGCGGTTAGACCATTGACCACGC
GTCCTCAAGAGGATGGAGCACGGGGGGTTCCGCAGGGATATGGATCGCCC
GGGCGCGCGCCGTACCACTCACATAAGTCTCCCCCAAAAGTACAACCGGA
TGTTGCAGATTTGAAGAAATGCTCAGCAGCACAGCAGTCAATGCACCATA
AGCAGGTTCTCCTGCCCCCGCACGACATCGCCACGGCTAGCGTGTGCCAT
CTATTGCACTCAGGCGTGCTGGGACGTGTGTGTGCGTGCACGCAGCCTTG
GCTGAGGCATTCTGGGCTTCGCCGCAGCTGACTGCGAGCCTCGAGCGGGG
CCATGGCTGTCGAGGCATGTACAAATTTTTGTTCACTGAGATGAGTTCAC
CCGCTTGAAACCTGGACTCCTTGTCTTATCTCTCTCATGTCCCCGCGCTT
TGGTTGTATGCATATGTGAATCGTCGCTTGCGCAGGATGTACCTGATGGA
CAAGTTCTCGGTAACGCCGGACCCGTGGGATAACAGAATCATCGTGAGTC
CGCGGAGCCCCCTGCCCGTCGGCAAAACTGGGTGCTGTCTTTTGCGTAAT
GGCGGAGAAGACGTGTCCTTCTGTTGTGTTGGCCCCGTCCCAGAGCAAAC
ACAGTTCCCTAGAGAGGGGAAAGATATTAAATTGATGATATACGTAGGAG
GCTTTTTAATATTTGTACATATTTTTTTGGTTTTCAGAGGCCAAGTGATG
GGGCAACGGCTGTACTTGTCCAAGAAACCCCTTTGCATTTCTTTGTTCTA
TCGGCGCACATAGAGTGAGAAGTCAACGCACCCCTCTGCTGCGTGTTGGG
GCAGTCTAGCGAGAGATCAAAACCGTGCACCGCACCTCTTTCCTTCATCA
ACATTCACACCTTGCACCTATTGTCGTCGCTCTGTGGAACTCGGTACACA
ACAGACAGTCCCCCGTAACCACGGCGTGCGAAACTTGAGTCCCCCCATTC
CGCCCATGCGGTCCTCGACTCTCCCTACTGTAGGCTTTGTCAACCCCGAA
TCTGACGCCTCAATGGGGGCACCCTTGACAAAGACACCCCTTTACCCGTA
CTACAGAATACTAATGGAATGGCCGTGATCCCTTGCTTCGGCCGCGCATG
CGTTAATTGTTTCGTTGCCGGAGGGTGGCGACTCTTTCGAGTCCAATTTC
CTGGGTTCATTGTCTGGAGGGGCGAGTCGCCCTTTTCTTTTAGCGTTAGC
CTATATTGCGGTATCTCCCAAGCTCCCTGCCTGCTCTCTGGCCCCCAGGT
GCACTTGTACCGCTCACACCCACTGGTTAAATAGATGCTTCCCGGTTTGT
TGAAGACTCCCTTGCCCTTGGTATGTGTGTCGTTGAACGTTTGTTGTTTG
TTTTTCAGCGCTTCAACAATTTCCTGCAGCTTCTGTCGTGCATCTGCAAC
ATCGCCGCCATCTGCATCGAGGAGATCCGCGAGCTGGCTAGGATCATCGA
CCTCATCGCCGACATCGTTTACATGACAACCGTCGGCTGCATGACGGTAA
GGGATATACATTGAGAGGAGAGGCAGCGGAGCGAAgACGATAATGAAATG
CCTCCGCGCTGCGTTTTGCACCGCGTGATATCTGACGTTTTTGTCTCACT
GAAGTGTACGGTGCAAACACCGCAACCCACGCTTGTACAAATTAACATAG
GTATAACCGTTAAGTCTCAGGGCCCAAGCAAGATCGTAAAGGCCCCCTAC
TCTCCGAAAGCAGTACATAGCCCTTCAATCCAATCGAATCAATCGCCCGA
CACACGATGGCACTTCGCGCCGTGTGCCTCACAAGCCGCGGTCAGCGAGA
AACTCGTGTTTCTGtccTCCATCCCAGCCTTCTAAGGATGCGCAGGTCTG
AGGTCGAAAAATTGCGGCATTCTCTATGGTCGCTGAATCACATAccaggt
gGTGGACTGAACCGGATACCCACTATCCAGGCACAGAGCCAGGGGAAGCG
GTGCTACCTAACCTTTTGTATCCAGGCGCTTATTCCATGTAAATGTTGAG
AATGCAGAGGCCCCCCGGATGGGGCAGCAGGTGATGATCTCCGCGGAGAT
GTTACAGATCCCCAGCACAGCAGTGTCCCCAAGTCTTGCCCCTGCCCCCG
CCTCCTTACATGAACTTTTTTGTGTGCAACAGGGCCAAATGATATACGAG
ATGGACTACCAAGCTTCGGTTGCCCCCAAGGCTCAGGCTATCGCTGGCCG
GTAAACTTGGTGTGGTAACTAGCCTCCGTGAAATCAACGGGGCTGTTGCT
GCCATGCATTGCAGTCTTGAGGGTGATTGACTCGCAGGCCGACCGCTGTT
TGTGTGGCACGCTCGCTGGAGGCACTTGTTGAGCCTCGCTGGTTGTGGGG
CGGGGAGAGCGGAGGCTCGTGTGGCGCCGCTGACGTTGCAACGAGCGTCG
GGCAAGGCCGCTCGTTTGGTCGGCAGCAGGAACACAACAGTCTTCCTGCT
GCTGCTGCTGCTGCCAGCTATTTTTTTTTGCCCCAAGAACGCATGAGGCG
GAATCGTTATTGTTCCGTCGACTGTGGGAGGTAGCCAAGGATCCCGCCTC
TCCTACCTTGATTGTTGCagggagAGGTGCCGAGaATGCAACGAGGGAGG
CTAGGGGGAGGGGGAGGGGGGTCGAACAGCGCAGTTTTCCTGTGTAGCCA
GGTGCGAGCGTGGTAGGTTTCTGAGAAAGTTCAATTGCACTCGGTCGTTT
ATTTTCACACCCCGGAGCTTTAGCGGCAGCTCGGTCCGGATTCGCTGCCG
GGAGGGGTCTGTTTTGGTGAAGGCACGCCGCCAAAGCTGCAAGTCGAGGA
AGCACCCTTGCGGTGAAAAGGGAGATTTGGTGTCTGTAGTAATCGAAGTG
AGAGCAGTCGGTCCAGATTTGGAGGAAGCATAGGGTAAACTCGGGCAACG
ACGGTGAGGCATGGGTGGATTCCGGTGCCGAACCAGGGAGACCCATAGAC
CCATTGAGTATTTTCGACGTTCGCACGGACGATTGTCAGGAAAGGTTTCT
TGCTCAACAATCATGTCCATTTTTTCTTCTTTTTTTTTTATCCTCTTGCT
TTTGTTTTGGGGGGGGTCAAGCACTTCTTGGAGTTGAGCGAGTGATCGTA
TGGTTCGGTCGCCGGTGTACTGCGTGCTGGTGCGCCATGTACTCGTCTTA
AAGGGGTTTGCCTACGTATTAAGAGGGGTTTGTCGGCGTTGAAAGGGGCC
CGCGTTTCTCCCGCGAGGGCGGGAATAGGTACCCGAAAAAACGATCGGAA
GAATCTGGATGCACTTTCTCATGTGCGCCGCGCAACCGGGGCATCCGCTG
GGAGTTTGTGTCACGTGAGCTGGGGAGGTTCCCACGCCACTCCCGCAATC
GTAGTCTTCTTAGAGATGGCGTGTAGAACTAGGGGGCAGGTTGTTTTGTC
GCCTTTTGTGCACGCACCACTACTACGGTAGTGTATATTTCGTCTTGAAG
TAGTCACCGTATATGTTTTTGTAGAAAATACTTGATTTTTTTTTTTCCCT
AGGTTTTGTTACGTACTGCTTTTTTTTTTGCCGAGGTTGTCGTTGAACAT
ATTGCGTTGGTATAGCGTCGAAGGGGGGGTTGGACGGGTAAATCAATCAG
GCTTGTTGGTGGACTGGTTTTGTTCCTTTCCTCAGCAAAAATTAAGGGAG
CGCGCGCGGACGACTCCCGGGGTTGTCCCTTGTTTAACATGTGAGGGTGG
ACCAGTACCCCTTAGATTTTCGAACTCGAGGGTTGGTTGTTGGGGTTTTC
CTGTACTTTTATGTTTCTTGGAACAGAATAGGGAAAAGCCACACGTAGCA
ATAATATAATACGCCGATCAAGTGCCGCTGGTTGCGGTTCGACCGCGGCC
CTCGACCGCCTGTGGTCCATCGGGATGTGTGTCCCTCCCATTTCTCTGTG
GTCACGACAGAAGAAGTGGGGTGCAGTATATTCTCACCGGGCGACGGGCG
TGCTGGATGCTGGAGACCTTCGGGCTGGGGGTGGGTGGGAGGCTTTGCAG
TCTTGCCGCCCCACTTGAAAAAGCGCGGTCGCGGACCGAAGTGTTCCGCG
CGGGCGGACACGGCGATGGCACAGCTGGTGTTTTTGGTTAGACTTGCTCT
TGAAGTCAAACCCCCAGTTGTGACTTTTGGCCAAATCCCCCAGTTATGAT
TGGCTGGCCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig87:319415..325474+

>mRNA_Ecto-sp6_S_contig87.17808.1 ID=mRNA_Ecto-sp6_S_contig87.17808.1|Name=mRNA_Ecto-sp6_S_contig87.17808.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp6_S_contig87:319415..325474+ (Ectocarpus species6 EcLAC_371)
ATGATGGAGGCACCGTGCAAGAACTGCCCCTGGTTTTGCTTCGGCTGCCT
GTGCACGTGCTGCGCGCAGTTCATCGTCAGGAAGAGGGCCCTCGACGGAA
ACCTCGAGAACTACTTATGCTGTCAGGGCTACTATCCAATGTGCTGTATG
AGCGCGGGCGACTGCGGGGAGAGAAGCTGCCCGTGTTTCTGCCTCTGTTT
GGAGTCGTTCTGTTGCAACAGCTGTGCTGTCAGCTCCAGCAGGATGTACC
TGATGGACAAGTTCTCGGTAACGCCGGACCCGTGGGATAACAGAATCATC
CGCTTCAACAATTTCCTGCAGCTTCTGTCGTGCATCTGCAACATCGCCGC
CATCTGCATCGAGGAGATCCGCGAGCTGGCTAGGATCATCGACCTCATCG
CCGACATCGTTTACATGACAACCGTCGGCTGCATGACGGGCCAAATGATA
TACGAGATGGACTACCAAGCTTCGGTTGCCCCCAAGGCTCAGGCTATCGC
TGGCCGGTAA
back to top