mRNA_Ecto-sp6_S_contig87.17807.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig87.17807.1
Unique NamemRNA_Ecto-sp6_S_contig87.17807.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig87.17807.1 vs. uniprot
Match: D7FZB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZB7_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 5.130e-16
Identity = 42/45 (93.33%), Postives = 42/45 (93.33%), Query Frame = 2 
Query:  284 GQMMAEMGYQEGTSPEAQFITGREYGATLDRGINSKEAMDEGRGY 418
            GQMMAEM YQEGTSPEAQ ITGREYGA LDRGINSKEAMDEGRGY
Sbjct:  178 GQMMAEMEYQEGTSPEAQCITGREYGAMLDRGINSKEAMDEGRGY 222
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig87.17807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZB7_ECTSI5.130e-1693.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig87contigEcto-sp6_S_contig87:314179..315484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1306
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size132
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350496.3566678-UTR-Ecto-sp6_S_contig87:314178..3144671682350496.3566678-UTR-Ecto-sp6_S_contig87:314178..314467Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig87 314179..314467 +
1682350496.372646-UTR-Ecto-sp6_S_contig87:314599..3154841682350496.372646-UTR-Ecto-sp6_S_contig87:314599..315484Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig87 314600..315484 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350496.364931-CDS-Ecto-sp6_S_contig87:314467..3145991682350496.364931-CDS-Ecto-sp6_S_contig87:314467..314599Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 314468..314599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig87.17807.1prot_Ecto-sp6_S_contig87.17807.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig87 314468..314599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig87.17807.1

>prot_Ecto-sp6_S_contig87.17807.1 ID=prot_Ecto-sp6_S_contig87.17807.1|Name=mRNA_Ecto-sp6_S_contig87.17807.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=44bp
MMAEMGYQEGTSPEAQFITGREYGATLDRGINSKEAMDEGRGY*
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mRNA from alignment at Ecto-sp6_S_contig87:314179..315484+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig87.17807.1 ID=mRNA_Ecto-sp6_S_contig87.17807.1|Name=mRNA_Ecto-sp6_S_contig87.17807.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1306bp|location=Sequence derived from alignment at Ecto-sp6_S_contig87:314179..315484+ (Ectocarpus species6 EcLAC_371)
AAGGGTCTCGCCATTTGCTTCGAAGCGGCAACACAAGGGACCGCCAAGAA
CGATAGTATTTTTCTGATCATTTCACCGCCACCGATGTTTAAGTCTCATG
TAGGGAAATCACAATGATATGATTTCCTCGTCGTAAGATGACCCCGCCCG
CTCACATGCAGAACACCATACATCGCAATGAATATGCCATCCACCAAGCC
GTAAGAACCGGCGGGAACAAATGATGAGTCTCATCCCTGCTCCGCCGCAC
GTTGGGTGAAATTTCTCGTTTGGTGACCCCCAGGGCCAAATGATGGCCGA
GATGGGGTACCAAGAAGGAACCTCACCGGAGGCCCAATTCATCACGGGGC
GTGAATACGGCGCCACGCTCGACCGTGGTATTAATTCGAAGGAAGCGATG
GACGAAGGTCGGGGGTACTGAGTGGACACATGCCTCGTGTTGGCAGGAAG
CATCGCAAACACCATGCGTTTGCGGAATTTGGTGGGGTATTGTGGAGATG
AACCAAATCCTCAGAAATCGACCACCAAGCTTCTTGAGTGGCGGCGTTTC
GCCGAAACTGAGTAAGCGGTGTTGCCCAACCGCGAGTTCTTTGTAGGCTC
TCTGTTTTAGACTATCATGCAAGTAGGGTGGGATATTTTCTACTGATCAC
ATCACTAGAGCTGCTGTACCTGTTTTTTGCAGGTCAAACCCCAACGGGGT
TGGCGTGAGTTGCATCCCGATTTCCGTGCTTCTTGTGCAAGACAGGGACT
TGAGCGGTTTGAAGTCGGCTTATCCTGTCGTTGTTGCCCAAGAATATGCC
ATCATTTTGAGTCAAGTATGGCTTGCGTGCATCCGCTGCTTTATCTTGAC
TTGAAGTTGAGTGCGCGCAAAGCCCCCATTGTTGCCTGCGCTCGACGCTG
GACGGCACCCACCGTGGTTTTTCAGTGTTTGGTTGGAGGTCGACTCTTTG
TGTTCGAAGGGATTCCACTACTTGCGCTTTGTTCGATTGGTGAGGGAAAG
TGTGTATTGACAGCGACTTTCAGAGAGTCGCGGCGCGAGAAGAAAACTTT
GAATCAATGGGTGCTCTTTCTGTAAGATTACCATCATCAATGAATACTAA
TTCATTGATTTGACGTTTAGACTAGGGATTTGAGTAAATGTTTCTTGGAG
TGCCGCCAGCCTCACTATTATATTCTATTCTACGGATTTGTCCATTCTTC
ACCTTCGAACAGTGGGGCAGAGGAGGAGGTGGGTGTGCGTGTGCTGCTGA
TGGTGGATAGCTGTCGAGGTCAGGTTTCACCTTGAACAAATCCAGACCAA
CTACTG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig87:314179..315484+

>mRNA_Ecto-sp6_S_contig87.17807.1 ID=mRNA_Ecto-sp6_S_contig87.17807.1|Name=mRNA_Ecto-sp6_S_contig87.17807.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=132bp|location=Sequence derived from alignment at Ecto-sp6_S_contig87:314179..315484+ (Ectocarpus species6 EcLAC_371)
ATGATGGCCGAGATGGGGTACCAAGAAGGAACCTCACCGGAGGCCCAATT
CATCACGGGGCGTGAATACGGCGCCACGCTCGACCGTGGTATTAATTCGA
AGGAAGCGATGGACGAAGGTCGGGGGTACTGA
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