mRNA_Ecto-sp6_S_contig87.17803.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig87.17803.1
Unique NamemRNA_Ecto-sp6_S_contig87.17803.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig87.17803.1 vs. uniprot
Match: D7FZB9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB9_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 5.510e-37
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 2 
Query:  245 MGRDCKEAARALYACMKKTQCMKDGGRLKECLKTSDREFCRQDHQSFFECKRGQLDMRTRIRGERSF 445
            MGRDCKEAARALYACMKKTQCMKDGGRLK+CLKTSDREFCRQDHQSFFECKRGQLDMRTRIRGERSF
Sbjct:    1 MGRDCKEAARALYACMKKTQCMKDGGRLKDCLKTSDREFCRQDHQSFFECKRGQLDMRTRIRGERSF 67
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BLAST of mRNA_Ecto-sp6_S_contig87.17803.1 vs. uniprot
Match: A0A835ZA98_9STRA (Cytochrome c oxidase assembly protein PET191 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA98_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.540e-18
Identity = 41/67 (61.19%), Postives = 53/67 (79.10%), Query Frame = 2 
Query:  245 MGRDCKEAARALYACMKKTQCMKDGGRLKECLKTSDREFCRQDHQSFFECKRGQLDMRTRIRGERSF 445
            M  DCKE ARAL ACM++++CM+ GG+L+ECLKT +   C    +S+FEC+RGQLDMRTRIRG RS+
Sbjct:    1 MSSDCKEHARALLACMQESKCMQGGGKLRECLKTDEVHQCELQRRSYFECRRGQLDMRTRIRGPRSY 67
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BLAST of mRNA_Ecto-sp6_S_contig87.17803.1 vs. uniprot
Match: A0A482S5P5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S5P5_9ARCH)

HSP 1 Score: 71.6 bits (174), Expect = 3.970e-12
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 2 
Query:  245 MGRDCKEAARALYACMKKTQCMKDGGRLKECLKTSDREF-CRQDHQSFFECKRGQLDMRTRIRGERSF 445
            MG+ CK+ AR L  CM +TQC++ G  +KEC+KT + E  C Q  +++FECKRG LDMR RIRG + +
Sbjct:    1 MGKSCKDIARTLLDCMAETQCVQQGQDVKECMKTMEGEDRCGQLRRAYFECKRGSLDMRYRIRGPKVY 68
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BLAST of mRNA_Ecto-sp6_S_contig87.17803.1 vs. uniprot
Match: K3X2Q5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2Q5_GLOUD)

HSP 1 Score: 70.1 bits (170), Expect = 1.860e-11
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 2 
Query:  245 MGRDCKEAARALYACMKKTQCMKDGGR-LKECLKTSDREF-CRQDHQSFFECKRGQLDMRTRIRG 433
            MG+ C++ A AL  CM   +CM DG R LK+CLK  +    CR   Q++FECKRGQLDMRTRIRG
Sbjct:    1 MGKSCRDMAEALRDCMVTEECMSDGTRTLKQCLKMKEYAHECRGYRQAYFECKRGQLDMRTRIRG 65
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BLAST of mRNA_Ecto-sp6_S_contig87.17803.1 vs. uniprot
Match: A0A3R7MTX6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7MTX6_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.120e-10
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 2 
Query:  245 MGRDCKEAARALYACMKKTQCMKDGGR-LKECLKTSDREF-CRQDHQSFFECKRGQLDMRTRIRG 433
            MG+ C++AA AL  CM + +CM DG R LK+CL      + C++   ++FECKRGQLDMRTRIRG
Sbjct:    1 MGKACRDAAEALRDCMMEQECMADGTRTLKQCLHERTYSYECKEFRVAYFECKRGQLDMRTRIRG 65
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BLAST of mRNA_Ecto-sp6_S_contig87.17803.1 vs. uniprot
Match: A0A2D4CB04_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CB04_PYTIN)

HSP 1 Score: 66.6 bits (161), Expect = 3.000e-10
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 2 
Query:  245 MGRDCKEAARALYACMKKTQCMKDGGR-LKECLKTSDREF-CRQDHQSFFECKRGQLDMRTRIRG 433
            MG+ C++ A  L  CM + +CM DG R LK+CL+  +    CR+   ++FECKRGQLDMRTRIRG
Sbjct:    1 MGKSCRDMAELLRDCMVEEECMSDGTRTLKQCLRMKEYAHECRELRYAYFECKRGQLDMRTRIRG 65
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BLAST of mRNA_Ecto-sp6_S_contig87.17803.1 vs. uniprot
Match: A0A8K1CG31_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CG31_PYTOL)

HSP 1 Score: 66.2 bits (160), Expect = 4.000e-10
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 2 
Query:  245 MGRDCKEAARALYACMKKTQCMKDGGR-LKECLKTSDREF---CRQDHQSFFECKRGQLDMRTRIRG 433
            MG+ C++ A  L  CM + +CM+DG R LK+CLK   RE+   C +   ++FECKRGQLDMRTRIRG
Sbjct:    1 MGKSCRDMAELLRDCMVEQECMRDGTRTLKQCLKM--REYAHECSELRYAYFECKRGQLDMRTRIRG 65
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BLAST of mRNA_Ecto-sp6_S_contig87.17803.1 vs. uniprot
Match: A0A024TWV1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TWV1_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 6.710e-10
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 2 
Query:  245 MGRDCKEAARALYACMKKTQCMKDGGR-LKECLKTSD-REFCRQDHQSFFECKRGQLDMRTRIRG 433
            MG+ C++ A AL  CM + +CM DG + LKECL+  + R  C++   ++FECKRGQ+DMR RIRG
Sbjct:    1 MGKACRDMAEALRDCMCEKECMSDGTKTLKECLRMEEFRHECKEYRLAYFECKRGQIDMRQRIRG 65
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BLAST of mRNA_Ecto-sp6_S_contig87.17803.1 vs. uniprot
Match: A0A6G0XTT3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XTT3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 9.170e-10
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 2 
Query:  245 MGRDCKEAARALYACMKKTQCMKDGGR-LKECLKTSD-REFCRQDHQSFFECKRGQLDMRTRIRG 433
            MG+ C++ A AL  CM + +CM DG + LK+CL+  + R  C +   ++FECKRGQLDMR RIRG
Sbjct:    1 MGKSCRDMAEALRDCMVEKECMSDGTKTLKQCLQLEEFRHECHEYRVAYFECKRGQLDMRQRIRG 65
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17803.1 vs. uniprot
Match: A0A067BWW3_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BWW3_SAPPC)

HSP 1 Score: 63.9 bits (154), Expect = 2.340e-9
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 2 
Query:  245 MGRDCKEAARALYACMKKTQCMKDGGR-LKECLKTSD-REFCRQDHQSFFECKRGQLDMRTRIRG 433
            MG+ C++ A  L  CM + +CM DG R LK CLK  + +  C++   ++FECKRGQ+DMR RIRG
Sbjct:    1 MGKSCRDMAEQLRDCMLEMECMSDGKRTLKTCLKLDEYKHECKEYRYAYFECKRGQIDMRQRIRG 65
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig87.17803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZB9_ECTSI5.510e-3798.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZA98_9STRA1.540e-1861.19Cytochrome c oxidase assembly protein PET191 n=1 T... [more]
A0A482S5P5_9ARCH3.970e-1251.47Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
K3X2Q5_GLOUD1.860e-1156.92Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3R7MTX6_9STRA1.120e-1053.85Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A2D4CB04_PYTIN3.000e-1052.31Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8K1CG31_PYTOL4.000e-1053.73Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024TWV1_9STRA6.710e-1050.77Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
A0A6G0XTT3_9STRA9.170e-1050.77Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A067BWW3_SAPPC2.340e-949.23Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig87contigEcto-sp6_S_contig87:292062..294508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score70.1
Seed ortholog evalue6.5e-10
Seed eggNOG ortholog36331.EPrPI00000017314
Preferred nameCOA5
Model size1503
KEGG koko:K00738,ko:K18178
KEGG ReactionR05987
KEGG Pathwayko00510,ko00513,ko01100,ko04714,map00510,map00513,map01100,map04714
KEGG ModuleM00075
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0006996,GO:0007005,GO:0008150,GO:0008535,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0017004,GO:0019866,GO:0022607,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032592,GO:0033108,GO:0033617,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0065003,GO:0070013,GO:0071840,GO:0098573
Exons3
EggNOG free text desc.cytochrome c oxidase assembly protein. Source PGD
EggNOG OGs1MHXH@121069,KOG4114@1,KOG4114@2759
Ec32 ortholog descriptionCytochrome c oxidase assembly protein PET191
Ec32 orthologEc-07_001660.1
EC2.4.1.145
Cds size291
COG Functional cat.S
CAZyGT54
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350496.039295-UTR-Ecto-sp6_S_contig87:292061..2922181682350496.039295-UTR-Ecto-sp6_S_contig87:292061..292218Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig87 292062..292218 +
1682350496.0802705-UTR-Ecto-sp6_S_contig87:293453..2945081682350496.0802705-UTR-Ecto-sp6_S_contig87:293453..294508Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig87 293454..294508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350496.0517375-CDS-Ecto-sp6_S_contig87:292218..2923741682350496.0517375-CDS-Ecto-sp6_S_contig87:292218..292374Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 292219..292374 +
1682350496.0609224-CDS-Ecto-sp6_S_contig87:293040..2930811682350496.0609224-CDS-Ecto-sp6_S_contig87:293040..293081Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 293041..293081 +
1682350496.0702612-CDS-Ecto-sp6_S_contig87:293359..2934531682350496.0702612-CDS-Ecto-sp6_S_contig87:293359..293453Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 293360..293453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig87.17803.1prot_Ecto-sp6_S_contig87.17803.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig87 292219..293453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig87.17803.1

>prot_Ecto-sp6_S_contig87.17803.1 ID=prot_Ecto-sp6_S_contig87.17803.1|Name=mRNA_Ecto-sp6_S_contig87.17803.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=97bp
MLLPPGSAFTAVPYQIPQGGVFSLGDKQTMGRDCKEAARALYACMKKTQC
MKDGGRLKECLKTSDREFCRQDHQSFFECKRGQLDMRTRIRGERSF*
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mRNA from alignment at Ecto-sp6_S_contig87:292062..294508+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig87.17803.1 ID=mRNA_Ecto-sp6_S_contig87.17803.1|Name=mRNA_Ecto-sp6_S_contig87.17803.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2447bp|location=Sequence derived from alignment at Ecto-sp6_S_contig87:292062..294508+ (Ectocarpus species6 EcLAC_371)
GCGAGTCTTCTCGCATAAAGAGCAGAGTGCTCTGCAATTGTTTATACCGT
GGGCAATATTACTGTAGCAAAGGAACAGCTTGGGGCAGACGCGCACATGC
CAAGAGTTTAGGCAGCTAAGACAAAGAGGAAGCCGCTTCGTGCTGTGAAC
GCCCAGAATGCTGCTGCCTCCCGGGTCCGCGTTTACTGCTGTGCCATATC
AGATTCCACAGGGAGGTGTTTTTTCTCTGGGCGACAAGCAAACGATGGGG
AGGGATTGCAAGGAGGCCGCGCGGGCTCTTTATGCCTGCATGAAAAAAAC
TCAATGCATGAAGGTAGGCACACCCAACGAAGCTCTTCACCCCAGTGGTA
CACCACATATCCTATGCCACATCGCGCCCATGACTCGGCACTGACAAGTA
CTCCAGTGTTGTCGGAGGAGGCTTGTGTATTTTGTGTACTCGACAGCCGA
ATCTAGTGCGATCCGATACCTGATTGCGTTCGGAAAAGAGCGACGGTCCA
CCCTCGCTGGGTGTGCTGTGCTTTGCCATAAATGCCCGAATCTGCTCTGT
TTTGCGGTATTTTCCCCTATTGGATCCCATCAACGCTTGGGCATTTCCTG
GACGACAAGTCATGGCGACATCTGCCGGGTCAGATGGCAGCGATCTTATG
ATGGATGGAAAGAGAAGAAAGCACGCATGTCGAAGAACCGGTAGCTATGC
ATTTGATGACGGAACGCTCGGCGAGCAGTTAGTTCGGCTGACTGCTGTGA
TTTCGCGCAGCAGTTTGCGTGCTGGTGCTGCTTCACCCATCCTCTAAAAT
GCGCAGGCTGTGTGGTCTTCAACACCAGTATCGATCTCGCATTTCTCAAG
CCCTTCCTCGAAGCCAGGGTGCTCGGCCTTCCTCATGTATGTCATGAAGA
ACGCGCCCGCCTCTTTGGCTCGCTCCACCGGCCCCCCCCTCTCTCGCGTG
GCGCCTCCTCTTGCGTCGTCTGTCCACAGGATGGTGGCCGCCTGAAGGAG
TGCCTGAAAACATCCGACAGGTTTGTGGCGAATGCTCAATGGGGGGGGGG
GTGCTGCTTTTGTAGGCCATCCAACGCCGTTGGCGACTTTCTAGTTTCAT
CTATGTGCCACGTTAGAGGGCAGTGTGGATTTCTTGGAGTCTGTCCAGCA
CGACCCCGTCGTGGCGTTGACTGGCCTTTCTTGCACGTCCACCCATTTTC
AATCTTTCAAGACGAGGGGATTTGGTGCTCCAAGTGACTCCCCACCGAGA
CTATTTCCCGTTCAAATCTTGTGCTCATTCGTGTCAACAAAACCGCAGGG
AGTTCTGCAGGCAGGATCACCAGTCGTTTTTTGAGTGCAAGCGCGGTCAG
CTGGACATGAGGACGAGAATACGGGGAGAGCGATCCTTCTGACACGCGCT
CGGGCGAGGGTTGGGCAGCAAACGAAAGCTTGATTCCGGGGTCTCTATCT
AACACGCGTTGCGACGCACGAAAGGCTCCGGGTGTTCATCACCTTCATGA
GATGTGAAGCAGGCGTTTTCCCATTGGGGGGGCTGTGAGTCGTTGGTACC
GGCAGGAATATGGTTGCAGGGCCTCCGGTGGCCGTGTGTTTTCTTTCGCG
ACTTGGGCAACGCGTTGTTTTTGCCCTTTTGTTGGAGTCCGGTGCTGGTG
ACTATCTTGTACACCTCTTCGCAGGTGCAGTTAGCTGGTTGCGAGGGGCC
TGCTGTCGCGGGACGCATACATGTCATATTTTGCAATAGCGCTTGAGATA
TATTTCGGGTACCAGGATAGCGGCGTCGGGGGTAGGGGTGTGGCACTCGA
ATAGAACGAGAGAATAGCCTTGGCGCTAGAAATATTTCCTATGTTCGAGC
ACCCCACATATTTGTAGGTATGCGTATGTATGGGGTAAAATGGCATGGTC
GGTGTGAACCGGCAGTGAACACGCCCCGTTGTGGATAAGGGTTGTGATCA
TATGATTGGTGATCGTTCACGCTGTTTTTTCTCGCTTTCCGCGCTTCACC
TCGCGTGTCGAGTGGGAATTGAATGAGAACCGCTGGCTCTTCGTTTTGGT
CTCCTTTGTCCGAAATCTGACACTACCTTTCACGTGGTGCCACATTAGGC
TGGAGACCTTTTCTGCATCCTTTATTATTTGGCACGGGTTGATTTTCAGT
GCAACACTCTTCTGATTTTTTCGTCCTGCTATTTCTGTATTGTTTTCATA
CCATGAGGCATCATGAGATCTCACGATGTCTCATCAGGTGCCGTGAGGTA
CCATGAGGTACCATGACGTGTCATGATGCATCATTAGAATTCATGTGGTG
CCATCAGGTGTCGTGAGGCAATATGAGGTACCTGGGGTTTCGTGAGCGGT
CTTAAAGTATCATGAGGTATCACGAAGCACCATGAGGTATCATGAGGGAC
CATGCCGTGCCAAGAGGTCTCATGAGGTGTCTCGAGGTATCATGGGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig87:292062..294508+

>mRNA_Ecto-sp6_S_contig87.17803.1 ID=mRNA_Ecto-sp6_S_contig87.17803.1|Name=mRNA_Ecto-sp6_S_contig87.17803.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp6_S_contig87:292062..294508+ (Ectocarpus species6 EcLAC_371)
ATGCTGCTGCCTCCCGGGTCCGCGTTTACTGCTGTGCCATATCAGATTCC
ACAGGGAGGTGTTTTTTCTCTGGGCGACAAGCAAACGATGGGGAGGGATT
GCAAGGAGGCCGCGCGGGCTCTTTATGCCTGCATGAAAAAAACTCAATGC
ATGAAGGATGGTGGCCGCCTGAAGGAGTGCCTGAAAACATCCGACAGGGA
GTTCTGCAGGCAGGATCACCAGTCGTTTTTTGAGTGCAAGCGCGGTCAGC
TGGACATGAGGACGAGAATACGGGGAGAGCGATCCTTCTGA
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