mRNA_Ecto-sp6_S_contig87.17787.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig87.17787.1
Unique NamemRNA_Ecto-sp6_S_contig87.17787.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig87.17787.1 vs. uniprot
Match: D8LQW6_ECTSI (Beta-glucosidase, family GH1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW6_ECTSI)

HSP 1 Score: 599 bits (1545), Expect = 4.550e-208
Identity = 300/348 (86.21%), Postives = 308/348 (88.51%), Query Frame = 1 
Query:    1 VYIALHEEAAAAGREVEVGIVKDLFQFHPYRWYN--------VLDHLLAWLCDKLFNQVIIEFLKTGRYRWWVPFCASVRFTDGRAPKANDFVGLNYYSHYYASLWNVIFEPDMEEKLRALPAETMTDMPHCVYPEGLYCALKAMSAIGHPIYVTENGIADADDTRRRWVLSNRHSYKTVRPDRKVGSATGKSSQQGHRPKDQIRRLYLKRYLYALSRAIKDGCDVRGYFYWSLYDNFEWCEGYGPRFGLYEVDFDTQRRTLRDSSKYYVEVVKKYSGKKASSGLAPDTAAVVGEGNVIGSRAAIYHKLKSSANVSEYVLQGGGGGAEPGESGERDMAGEPPAGYSIV 1020
            VYIALHEEAAAAGREVEVGIVKD     P              +   L   CD     VIIEFLKTGRYRWWVPFCASVRFTDGRAPKANDFVGLNYYSHYYASLWNVIFEPDMEEKLRALPAETMTDMPHC+YPEGLYCALKAMSAIGHPIYVTENGIADADDTRRRWVLSNRHS  TVRPD++VGSAT   + +G RPKDQIRRLYLKRYLYALSRAIKDGCDVRGYFYWSLYDNFEWCEGYGPRFGLYEVDFDTQRRTLRDSSKYYVEVVKK+S KKASSGLAPDTAAVVGEGN+IGSRAAIYHKLKSSANVSEYVLQGGGGGAEPGE GERD AGEPPAGYSIV
Sbjct:  153 VYIALHEEAAAAGREVEVGIVKDPVPVPPLPLVQRPRPPPRLAVRQTLQPACD-----VIIEFLKTGRYRWWVPFCASVRFTDGRAPKANDFVGLNYYSHYYASLWNVIFEPDMEEKLRALPAETMTDMPHCIYPEGLYCALKAMSAIGHPIYVTENGIADADDTRRRWVLSNRHSENTVRPDQQVGSATENQANRGSRPKDQIRRLYLKRYLYALSRAIKDGCDVRGYFYWSLYDNFEWCEGYGPRFGLYEVDFDTQRRTLRDSSKYYVEVVKKHSAKKASSGLAPDTAAVVGEGNIIGSRAAIYHKLKSSANVSEYVLQGGGGGAEPGEGGERDGAGEPPAGYSIV 495
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BLAST of mRNA_Ecto-sp6_S_contig87.17787.1 vs. uniprot
Match: A0A6H5KT44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT44_9PHAE)

HSP 1 Score: 385 bits (989), Expect = 2.640e-126
Identity = 220/351 (62.68%), Postives = 237/351 (67.52%), Query Frame = 1 
Query:  118 LAWLCDKLFNQVIIEFLKTGRYRWWVPFCASVRFTDGRAPKANDFVGLNYYSHYYASLWNVIFEPDMEEKLRALPAETMTDMPHCVYPEGLYCALKAMSAIGHPIYVTENGIADADDTRRRWVLS-----------NR--HSYKTVRPDRKVGSATGKS---------------------------SQQGHRPKDQIRRLYLKRYLYALSRAIKDGCDVRGYFYWSLYDNFEWCEG----------YGPRFGLYEVDFDTQRRTLRDSSKYYVEVVKKYSGKKASSGLAPDTAAVVGEGNVIGSRAAIYHKLKSSANVSEYVLQGGGGGAEPGESGERDMAGEPPAGYSIV 1020
            L  +C    +QVIIEFLKTGRYRWWVPFCASVRFTDGRAPKANDFVGLNYYSHYYASLW+VIFEPDMEEKLRALPAETMTDMPHC+YPEGLYCALKAMS IGHPIYVTENGIADADDTRRR V             NR   SY T     ++ S   K+                           S   HRP D       K  +  L RA +    +R     +L       EG          YGPRFGL+EVDF TQRRTLRDSSKYYVEVVKK+SGKK+SSGLAPDT  V GEGNVIG+RA IYHKLKSSANVSE VL+GGGGGAEPGE GERD  GEPPA YS+V
Sbjct:    3 LTRVCGPSPSQVIIEFLKTGRYRWWVPFCASVRFTDGRAPKANDFVGLNYYSHYYASLWSVIFEPDMEEKLRALPAETMTDMPHCIYPEGLYCALKAMSVIGHPIYVTENGIADADDTRRRCVAERPRGDNPNDQGNRTTSSYVTFTETLRLISEASKNLVAMDASNTIFDAKRLIGRKFADPTEASDMKHRPFDVAEGPGGKPMIECLLRARRSSSRLR-----NLRHGAGQAEGDRRGLPRQGGYGPRFGLFEVDFGTQRRTLRDSSKYYVEVVKKHSGKKSSSGLAPDTTDV-GEGNVIGTRAVIYHKLKSSANVSEDVLRGGGGGAEPGEIGERDGVGEPPACYSVV 347
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BLAST of mRNA_Ecto-sp6_S_contig87.17787.1 vs. uniprot
Match: A0A836CK19_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK19_9STRA)

HSP 1 Score: 311 bits (796), Expect = 1.220e-97
Identity = 150/266 (56.39%), Postives = 179/266 (67.29%), Query Frame = 1 
Query:    1 VYIALHEEAAAAGREVEVGIVKDLFQFHPYRWYNVLDHLLAWLCDKLFNQVIIEFLKTGRYRWWVPFCASVRFTDGRAPKANDFVGLNYYSHYYASLWNVIFEPDMEEKLRALPAETMTDMPHCVYPEGLYCALKAMSAIGHPIYVTENGIADADDTRRRWVLSNRHSYKTVRPDRKVGSATGKSSQQGHRPKDQIRRLYLKRYLYALSRAIKDGCDVRGYFYWSLYDNFEWCEGYGPRFGLYEVDFDTQRRTLRDSSKYYVEVVK 798
            +Y A+ + A  AGREV VGIVKDLFQFH ++W+N+ DH LAW  D++FN  II FL+TG++R+WVPF A V + D RAP ANDF+GLNYYSHYY SLWN+I EP +E KL ALP E MTDMP CVYPEGLY ALK M+ +G PI VTENGIAD  D RR                                       LY++RYLYALSRAI+DG DV GY+YWSLYDNFEWCEGY  +FGLY V+FDTQ R+LR ++  +  V K
Sbjct:   96 IYFAIKQAAEDAGREVHVGIVKDLFQFHAFQWHNLFDHFLAWAMDQIFNVQIINFLRTGKFRFWVPFAACVSYMDSRAPAANDFIGLNYYSHYYVSLWNIITEPVLEAKLMALPQEIMTDMPQCVYPEGLYSALKTMATLGKPIIVTENGIADKHDDRRY--------------------------------------LYIRRYLYALSRAIQDGVDVIGYYYWSLYDNFEWCEGYHMKFGLYAVNFDTQERSLRPAAAAFTNVHK 323
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BLAST of mRNA_Ecto-sp6_S_contig87.17787.1 vs. uniprot
Match: A0A7S4D568_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D568_HETAK)

HSP 1 Score: 253 bits (647), Expect = 3.840e-72
Identity = 124/270 (45.93%), Postives = 163/270 (60.37%), Query Frame = 1 
Query:    1 VYIALHEEAAAAGREVEVGIVKDLFQFHPYRWYNVLDHLLAWLCDKLFNQVIIEFLKTGRYRWWVPFCASVRFTDGRAPKANDFVGLNYYSHYYASLWNVIFE--PDMEEKLRALPAETMTDMPHCVYPEGLYCALKAMSAIGHPIYVTENGIADADDTRRRWVLSNRHSYKTVRPDRKVGSATGKSSQQGHRPKDQIRRLYLKRYLYALSRAIKDGCDVRGYFYWSLYDNFEWCEGYGPRFGLYEVDFDTQRRTLRDSSKYYVEVVKKY 804
            VY  L + +   G   ++G+VKD+FQF    W+N LDH LAW  +  FN  I++F +TG +  W PF +++ + D  A   NDF+GLNYYSHY  S+W   F+  PD EEKL A+P E  TDMPH +YPEG Y AL+ +  +  PI VTENGIAD DD+                                       R++Y+ RY+YA+S+AI +GCDVRGYFYWSL DNFEW  GYGP+FGLYEVDF TQ R LRD +K + ++V+K+
Sbjct:  347 VYQELKQLSVEHGWPSQIGLVKDIFQFDVLNWWNPLDHYLAWQLNHTFNDCILDFFRTGFFHHWAPFFSNIHYHDANATSCNDFIGLNYYSHYCVSVWRTFFQGVPD-EEKLAAMPREIYTDMPHVMYPEGFYRALRELQTLNLPIIVTENGIADKDDS--------------------------------------CRQMYIARYMYAMSKAIHNGCDVRGYFYWSLLDNFEWSLGYGPKFGLYEVDFKTQERRLRDGAKIFRKIVQKH 577
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BLAST of mRNA_Ecto-sp6_S_contig87.17787.1 vs. uniprot
Match: A0A814UWV4_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814UWV4_9BILA)

HSP 1 Score: 216 bits (551), Expect = 9.970e-60
Identity = 114/266 (42.86%), Postives = 159/266 (59.77%), Query Frame = 1 
Query:   19 EEAAAAGREVEVGIVKDLFQFHPYRWYNVLDHLLAWLCDKLFNQVIIEFLKTGRYRWWVPFCASVRFTDGRAPKANDFVGLNYYSHYYASLWNVIFEPDMEEKLRALPAET--MTDMPHCVYPEGLYCA-LKAMSAIGH-PIYVTENGIADADDTRRRWVLSNRHSYKTVRPDRKVGSATGKSSQQGHRPKDQIRRLYLKRYLYALSRAIKDGCDVRGYFYWSLYDNFEWCEGYGPRFGLYEVDFDTQRRTLRDSSKYYVEVVKKY 804
            ++ +++  + ++GIVKD+FQF PY   N LDH LA + D   N  I+ F KTG+Y W +     + +++ +A  +NDF GLNYYSH++     V F+ ++++  + +      MTDM H +YPEG+Y A ++  + +G+ PIY+TENGIAD  D RR                                       LYL+RYLYA+S+AIKDGCD+RGY+YWSL DNFEW EGY  +FGLY VD  TQ+R LRD SKY+ EV+KKY
Sbjct:  257 KKISSSSSKHQIGIVKDIFQFEPYNPLNPLDHYLASILDNSMNSCILNFFKTGKYVWNMRGSQRLEYSNIKAINSNDFFGLNYYSHFH-----VKFQFNLKQPFKLVHQSNILMTDMSHPIYPEGIYRACMRVRNELGNIPIYITENGIADEADDRRH--------------------------------------LYLRRYLYAISKAIKDGCDIRGYYYWSLLDNFEWAEGYDMKFGLYHVDLKTQKRILRDGSKYFREVIKKY 479
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BLAST of mRNA_Ecto-sp6_S_contig87.17787.1 vs. uniprot
Match: A0A0G4I1C0_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I1C0_9ALVE)

HSP 1 Score: 214 bits (546), Expect = 1.180e-58
Identity = 118/272 (43.38%), Postives = 160/272 (58.82%), Query Frame = 1 
Query:    4 YIALHEEAAAAGREV--EVGIVKDLFQFHPYRWYNVLDHLLAWLCDKLFNQVIIEFLKTGRYRWWVPFCASVRFTDGRAPKANDFVGLNYYSHYYASLWNVIFEPDM-EEKLRALPAETMTDMPHCVYPEGLY-CALKAMSAI-GHPIYVTENGIADADDTRRRWVLSNRHSYKTVRPDRKVGSATGKSSQQGHRPKDQIRRLYLKRYLYALSRAIKDGCDVRGYFYWSLYDNFEWCEGYGPRFGLYEVDFDT--QRRTLRDSSKYYVEVVK 798
            Y A+ +EAA    +   +VGIVKD+F F P   +NV D   A+L D LFN  I+ FL +GR+ + VPF   V +TD  AP  NDF+GLNYYS Y+ S+W+ +      E+ L   P E   DMP+ ++ EGLY C ++    + G PIYVTE+G +D +D+                                      +R L++ R+LYALS+AIKDG  V+G++YWSL DNFEWCEGY  RFGLYEVDF++  + RTLRD SK++V+VVK
Sbjct:  271 YRAIKQEAATMSLKSPPQVGIVKDIFPFLPKTAWNVFDQTAAYLADDLFNDAILRFLSSGRFVFSVPFLTRVEWTDAGAPSCNDFIGLNYYSRYFLSIWHALTNKGPPEDSLLGAPKEVKMDMPYTMHAEGLYTCLVRLHKQLPGVPIYVTESGASDRNDS--------------------------------------LRALFIHRHLYALSKAIKDGVPVQGFYYWSLMDNFEWCEGYSMRFGLYEVDFESAEKTRTLRDGSKHFVDVVK 504
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BLAST of mRNA_Ecto-sp6_S_contig87.17787.1 vs. uniprot
Match: A0A836CL70_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL70_9STRA)

HSP 1 Score: 221 bits (562), Expect = 7.220e-58
Identity = 111/208 (53.37%), Postives = 133/208 (63.94%), Query Frame = 1 
Query:  169 KTGRYRWWVPFCASVRFTDGRAPKANDFVGLNYYSHYYASLWNVIFEPDMEEKLRALPAETMTDMPHCVYPEGLYCALKAMSAIGHPIYVTENGIADADDTRRRWVLSNRHSYKTVRPDRKVGSATGKSSQQGHRPKDQIRRLYLKRYLYALSRAIKDGCDVRGYFYWSLYDNFEWCEGYGPRFGLYEVDFDTQRRTLRDSSKYYVEV 792
            +T R +    F ASV +TD RAP ANDF+GLNYY+HYY SLWN++ EP +E KL+ALP E MTDMP CVYPEGLY ALK M+ +G PI VTENGIAD  D RR                                       LY++RYLYALSRAI+DG DV GY+YWSLYD+FEWCEGY  +FGLY V+FDTQ R+LR ++  +  V
Sbjct:  756 ETHRRKILGAFAASVSYTDSRAPAANDFIGLNYYNHYYVSLWNIMTEPVLEAKLKALPQEIMTDMPQCVYPEGLYSALKTMATLGKPIIVTENGIADKHDDRRY--------------------------------------LYIRRYLYALSRAIQDGVDVIGYYYWSLYDSFEWCEGYHMKFGLYAVNFDTQERSLRPAAAAFTNV 925
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17787.1 vs. uniprot
Match: A0A813VFY1_9BILA (Hypothetical protein n=2 Tax=Adineta steineri TaxID=433720 RepID=A0A813VFY1_9BILA)

HSP 1 Score: 201 bits (512), Expect = 8.770e-57
Identity = 113/266 (42.48%), Postives = 144/266 (54.14%), Query Frame = 1 
Query:   52 VGIVKDLFQFHPYRWYNVLDHLLAWLCDKLFNQVIIEFLKTGRYRWWVPFCASVRFTDGRAPKANDFVGLNYYSHYYASLWNVIFEPDMEEKLRALP---AETMTDMPHCVYPEGLY--CALKAMSAIGHPIYVTENGIADADDTRRRWVLSNRHSYKTVRPDRKVGSATGKSSQQGHRPKDQIRRLYLKRYLYALSRAIKD-GCDVRGYFYWSLYDNFEWCEGYGPRFGLYEVDFDTQRRTLRDSSKYYVEVVKKYSGKKASSGL 831
            +GIVKD+FQF P+   N LD   + + D   N  I++F +TG ++W +P      +T+ RAP  NDF+GLNYYSH+       +F+P   E L       +  MTDMP+ +YPEGLY  C          PIY+TENGIAD  D RR                                       L+L+RYLYA+SRAI + GCD+RGYFYWSL DNFEW EGY  +FGLY VD  TQ RTLRD SKY+  V++K+  K     L
Sbjct:   27 IGIVKDIFQFDPWNPINPLDIYTSHILDYAMNGCILDFFRTGCFKWTMPGTIHRTYTNSRAPYTNDFIGLNYYSHFLVRF--NLFKPSFYEILHRRDDSGSALMTDMPYALYPEGLYRACVRLKNELPRLPIYITENGIADRFDDRRH--------------------------------------LFLRRYLYAVSRAINEAGCDIRGYFYWSLTDNFEWAEGYDMKFGLYHVDLQTQERTLRDGSKYFQYVIQKHREKYEKKNL 252
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17787.1 vs. uniprot
Match: A0A2E2VVE8_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2E2VVE8_9BACT)

HSP 1 Score: 201 bits (510), Expect = 1.660e-56
Identity = 102/255 (40.00%), Postives = 151/255 (59.22%), Query Frame = 1 
Query:   37 GREVEVGIVKDLFQFHPYRWYNVLDHLLAWLCDKLFNQVIIEFLKTGRYRWWVPFCASVRFTDGRAPKANDFVGLNYYSHYYASLWNVIFEPDMEEK-LRALPA-ETMTDMPHCVYPEGLYCALKAMSAIGHPIYVTENGIADADDTRRRWVLSNRHSYKTVRPDRKVGSATGKSSQQGHRPKDQIRRLYLKRYLYALSRAIKDGCDVRGYFYWSLYDNFEWCEGYGPRFGLYEVDFDTQRRTLRDSSKYYVEVV 795
            G+E ++GIVK++ QF P R +N+LD L     D ++N++ + +  TG+   ++P    + +++  A K+ DF GLNYYSH +     V F+ D  E  +   P  +TMTDMP+ +YPEG Y A+K++ ++G PI +TENGIADA D RR                                       LY+KRY+YA+ ++I +G +++GYFYWSL DNFEW EGY  +FGLYEVDF TQ+RTLR  SK +++++
Sbjct:   37 GKESQIGIVKNVMQFDPSRRWNLLDWLACIFTDTVYNKMSLSYFSTGKITIFIPTLVKLFYSNKNAMKSTDFFGLNYYSHVH-----VKFQFDKHEFFINTFPENDTMTDMPYTIYPEGFYRAIKSVESVGVPIIITENGIADAKDDRRA--------------------------------------LYIKRYIYAMKKSISEGSNIKGYFYWSLMDNFEWAEGYDMKFGLYEVDFKTQKRTLRQGSKAFIKII 248
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BLAST of mRNA_Ecto-sp6_S_contig87.17787.1 vs. uniprot
Match: A0A3A0DJS8_9BACT (Glycoside hydrolase family 1 protein n=2 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A3A0DJS8_9BACT)

HSP 1 Score: 205 bits (522), Expect = 1.050e-55
Identity = 108/256 (42.19%), Postives = 146/256 (57.03%), Query Frame = 1 
Query:   37 GREVEVGIVKDLFQFHPYRWYNVLDHLLAWLCDKLFNQVIIEFLKTGRYRWWVPFCASVRFTDGRAPKANDFVGLNYYSHYYASL-WNVIFEPDMEEKLRALPAETMTDMPHCVYPEGLYCALKAMSAIGHPIYVTENGIADADDTRRRWVLSNRHSYKTVRPDRKVGSATGKSSQQGHRPKDQIRRLYLKRYLYALSRAIKDGCDVRGYFYWSLYDNFEWCEGYGPRFGLYEVDFDTQRRTLRDSSKYYVEVVKK 801
            G + ++G  K++FQF PYR+++  D +L+   + LFN  I +F   G +++  P    V   +  A +A DF+GLNYYSH++  L W    +          P + MTDMP  VYPEG Y A+K +S +  PIYVTENGIADA D RR                                       L+++RYLYALS+A+K G DVRGYFYWSL DNFEW EGY  +FGLYEVDF TQ+R LR+ ++ +VE+VK+
Sbjct:  250 GAQAQIGFAKNIFQFDPYRYWHPADWILSRRLNLLFNDSIFDFFNAGHFKFHTPGLVKVEHHNSAAVRALDFIGLNYYSHFHVKLKW----DRTTPFTFACPPNQIMTDMPFAVYPEGFYRAVKEISRLNAPIYVTENGIADAKDDRRE--------------------------------------LFIRRYLYALSQALKAGEDVRGYFYWSLLDNFEWAEGYDMKFGLYEVDFATQKRKLREGARSFVEIVKR 463
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig87.17787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQW6_ECTSI4.550e-20886.21Beta-glucosidase, family GH1 n=1 Tax=Ectocarpus si... [more]
A0A6H5KT44_9PHAE2.640e-12662.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CK19_9STRA1.220e-9756.39Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A7S4D568_HETAK3.840e-7245.93Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A814UWV4_9BILA9.970e-6042.86Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A0G4I1C0_9ALVE1.180e-5843.38Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A836CL70_9STRA7.220e-5853.37Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A813VFY1_9BILA8.770e-5742.48Hypothetical protein n=2 Tax=Adineta steineri TaxI... [more]
A0A2E2VVE8_9BACT1.660e-5640.00Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
A0A3A0DJS8_9BACT1.050e-5542.19Glycoside hydrolase family 1 protein n=2 Tax=candi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig87contigEcto-sp6_S_contig87:109850..117590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score451.4
Seed ortholog evalue2.5e-124
Seed eggNOG ortholog2880.D8LQW6
Model size1883
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.beta-glucosidase activity
EggNOG OGsCOG2723@1,KOG0626@2759
Ec32 ortholog descriptionBeta-glucosidase, family GH1
Ec32 orthologEc-07_001850.1
Cds size708
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig87.17787.1prot_Ecto-sp6_S_contig87.17787.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig87 111736..116718 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350494.2806118-UTR-Ecto-sp6_S_contig87:109849..1099991682350494.2806118-UTR-Ecto-sp6_S_contig87:109849..109999Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig87 109850..109999 +
1682350494.2928934-UTR-Ecto-sp6_S_contig87:110870..1109921682350494.2928934-UTR-Ecto-sp6_S_contig87:110870..110992Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig87 110871..110992 +
1682350494.3037357-UTR-Ecto-sp6_S_contig87:111692..1117351682350494.3037357-UTR-Ecto-sp6_S_contig87:111692..111735Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig87 111693..111735 +
1682350494.3604493-UTR-Ecto-sp6_S_contig87:116718..1170931682350494.3604493-UTR-Ecto-sp6_S_contig87:116718..117093Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig87 116719..117093 +
1682350494.3684866-UTR-Ecto-sp6_S_contig87:117105..1175901682350494.3684866-UTR-Ecto-sp6_S_contig87:117105..117590Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig87 117106..117590 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350494.3142605-CDS-Ecto-sp6_S_contig87:111735..1119891682350494.3142605-CDS-Ecto-sp6_S_contig87:111735..111989Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 111736..111989 +
1682350494.3240964-CDS-Ecto-sp6_S_contig87:112186..1122101682350494.3240964-CDS-Ecto-sp6_S_contig87:112186..112210Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 112187..112210 +
1682350494.3354383-CDS-Ecto-sp6_S_contig87:112671..1127811682350494.3354383-CDS-Ecto-sp6_S_contig87:112671..112781Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 112672..112781 +
1682350494.3443217-CDS-Ecto-sp6_S_contig87:115908..1159811682350494.3443217-CDS-Ecto-sp6_S_contig87:115908..115981Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 115909..115981 +
1682350494.3523798-CDS-Ecto-sp6_S_contig87:116471..1167181682350494.3523798-CDS-Ecto-sp6_S_contig87:116471..116718Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 116472..116718 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig87.17787.1

>prot_Ecto-sp6_S_contig87.17787.1 ID=prot_Ecto-sp6_S_contig87.17787.1|Name=mRNA_Ecto-sp6_S_contig87.17787.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=236bp
MEEKLRALPAETMTDMPHCVYPEGLYCALKAMSAIGHPIYVTENGIADAD
DTRRRWVLSNRHSYKTVRPDRKVGSATGKSSQQGHRPKDQIRRLYLKRYL
YALSRAIKDGCDVRGYFYWSLYDNFEWCEGYGPRFGLYEVDFDTQRRTLR
DSSKYYVEVVKKYSGKKASSGLAPDTAAVVGEGNVIGSRAAIYHKLKSSA
NVSEYVLQGGGGGAEPGESGERDMAGEPPAGYSIV*
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mRNA from alignment at Ecto-sp6_S_contig87:109850..117590+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig87.17787.1 ID=mRNA_Ecto-sp6_S_contig87.17787.1|Name=mRNA_Ecto-sp6_S_contig87.17787.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7741bp|location=Sequence derived from alignment at Ecto-sp6_S_contig87:109850..117590+ (Ectocarpus species6 EcLAC_371)
GTGTACATCGCTCTCCACGAAGAAGCGGCGGCCGCGGGCAGGGAAGTCGA
GGTCGGCATCGTGAAGGATCTGTTCCAGTTTCACCCCTACCGTTGGTACA
ACGTCCTCGACCACCTCCTCGCCTGGCTGTGCGACAAACTCTTCAACCAG
GTTAGGAACGAGGATGGTTGTCTTGAATTTTATCGTTGGTGGTGTTGTTG
TTGTTGTTGGTGGTGGTGGTGGTGTAGTTGTGCAAAAGCCTATTCAATCA
TGTTGGGGATGAGGATTGTTGTCTTGAGTTTTATCGTTGTTGGTGGTGGT
GGTGGTGGTGGTGGTGGTGGTGGTGGTGTAGTTGTGTGAAAGCCTATTCA
ATCCGGTTGGGGATGAGGATTGTTGTCTTGAATGTTGTTGTCGTTGGTGT
TGGTGGTGTCGATGTGCGACAACCTCTTCAACCAGGTGGGGGAAGAGGAC
TGGTGTCTTCGAGTTTGTCATTGGTGGTGGTGGTGGTGGTGGTATTGGTG
TGGGTATTGCGTTGGATGTGGTTGTCGATGTTGATGTTTCCTCGCTTGAG
TTCGCGCACCCACATACAACCCGCCGTACTTTTGATCAGTGTGACTGTTC
AGGGCATATGTACCGACGTTTATCGATTGTTTCTTTCTCCCTTTTGTTTT
TCGTAGCATGCGACGCTTTTCGTGGTGGCGGTGATAACCGAAGGTGTCCG
CGCCAGTTGAACCAGTGCCCGGTGTCCCCAGGTACTGCACAGGGATCGGA
AGGGTTTTCATTTGCGCTTCGTCACAAACCAACCAACACTGCAACAACGA
CTACAACAACAGCAACAATAACAGCATCGATAACAACAACAACAgcagcA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAGCAACAAC
AACAACAATAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCCACAA
CAAAAACAACAACAACAACAACAACAACAACAATACCTCTAACTCGTGTT
GGTGGTTCCTCGCCTTCCCAGGTGATCATCGAGTTTTTGAAGACTGGGCG
GTACCGCTGGTGGGTACCATTCTGCGCTTCCGTTCGCTTCACGGACGGAC
GGGCCCCCAAGGCGAACGACTTCGTAGGCCTTAACTACTACAGGTGGGTT
TCCTCACGAAGAGGCGTGTCTTCTCCGTCGAGTTTTTTGCTCGGTCTGGG
CGCGAAGTTTGCTCAGTCGAGAGGATGTCTGCCTCTTTGGGGCATAAGGT
ATCTGCCTCTTCGGGCGATACGCTCTCCGAATCTATCTCTTCGATGCGTG
GTTTTCCGAAAGGCCGGGGACAAAGAGTTAAAAGACGCTTGCGCCGAAGA
CATGGCGGGGCTCGCCACAAGGAATATTTCCCTGGGTCGAGCTTTTTTTT
TGGAGCGTTTCGCCACGGCGGTGCCATGGCCGCCTCGTCCGACTGCCACG
CCACTTGTGTTCCATGGTAATTTCCCATATTGTTGTATTTTTTTCACCAT
GGCACACACGCCGTCGGTCCTTCCTCCTCTGGGTACCTGAAACGCCTTCA
TCCTTGACGCCTCTTTGTGTCGTCGAGGTTCGTCTCTCGTGCGTTTGGTG
TATCGTATTGTATGATATCGTATCGTATCGTATCGTATCGTACGCCTACA
AGGTTGGTATTGGCGTCGGTGTGCGCGGCAAGCCTCTCGAGCCCTTGCAG
AGCACAACGTCTTGATCGGCGACACGGCGACCCAATAGCAACAACGACAT
CAACATCATCAACAACACCGCCACCAACAACAACAACCGCAACAACAACA
ACAACAACACACCCCGTCTATCCACCGCACCCAACGATCACAGCCACTAC
TACGCCTCCCTGTGGAACGTGATCTTCGAGCCGGATATGGAGGAGAAGCT
AAGGGCCCTTCCCGCCGAGACCATGACCGACATGCCGCACTGCGTATACC
CGGAGGGTCTCTACTGCGCCCTCAAGGCCATGAGCGCGATAGGGCACCCG
ATTTACGTGACCGAGAATGGGATCGCCGACGCTGATGACACGCGACGGAG
GTGGGTTTTGAGCAACCGACATTCATACAAAACCGTTAGACCAGATCGGA
AGGTGGGCTCGGCGACCGGAAAATCAAGCCAACAGGGGCAGTAGACCAAA
AGACTAGATCAGGATGTGAGTAAAGCAACCGAACATGGATGGGATCATGT
AGCAACCGAATACCAAACCAATAGACCACGGTAGGCGAACCCACGTTGAC
GGAGGTAGGTCTAGGCAACCGAAAATCCTACCATTAGACCATGCCAGGAG
GTGGGTTCGGCAACCGAAATCAAGCCAACAGAGGCAGTAGACCAAAAGAC
CAGATCAGGAGGTGAGTTTTGCAGCCGAACATAGGTGGGGTTATGTAGCA
ACCGAACACCAAAACCAATAGACCACGGGAGGCGAACCTACTTTGACGGA
GGTGGGTTTAGGCAACCCAAAATCATACCATCAGACCATGCCAGGAGGTG
GGCTTCGCACTCGAAATCAAGCCGATAGAGGCTGCAGACAAATAGACCAG
ATCAAGAGGTGGGTTAAGCAACCGAAACCAGACCAATATGCCACGTCAGC
CGCGCTGCTGGGTGGTGGTGGGTTTAGCAACCGAAAATCAACATAATAGA
GCCAGTCAGTCAGCCGTCAATCGCCGGCGGTGTGTTTTGCAACAGAAAAA
CCACACCAATAGACCAGGTCAGCGCTGGCAGTCAGTGTCTAATGGTTTGG
GTTTGGATGCTAAAGAAATACTCCGTCGCGTCTCTCTCTCTCTCTCTCTC
TCCCTCTCTGTCTGTCTCGCAGGCTGTACTTGAAGAGGTACCTGTACGCG
CTGTCGAGAGCGATCAAGGACGGCTGCGACGTGCGCGGCTACTTCTACTG
GTCTCTCTACGACAACTTCGAGTGGTGTGAAGGTGAAAACATTCTTTCAA
CTCAATGCGATTCGTGCGTTTTTTTGCTCCCTCCCTCCCTCCCTCCCTCC
CCTTTTTATCCGGAAAAGGCAAAGTTGCCAGGAAATCCGCCGGATGGCTG
CAGCAAGCAAATGGCTGGCCCGCGGCACCCAGCTCCTTTCTTTTTTTCTT
TGGATTTCCGTTGGATGGAGTTCATACTAGCAAGCGTGACTTTTCGAGCT
GCCGGAGGTGCAGGACTGAAGAGGATATAGGTAGCTTCTTTTCTCAGGGC
GACACCGAACGGGCTTCCCTCTTTAGCACCGGCTTCGTATGCATGGCCAC
ACAAGCTCGGAAAACCTACCGTGCTTGCACTCAGTACCATGCATGAACCC
CACTGCTCACTAAACCGGCTGGCACTTTTCATTTTTTTTCGGCTTTAACC
TGACACGAGGGTGGTTAACGAACAGGACCCGAGTCATTCTCACATTTCTC
TTTCTCTACTTGCGAAGGATAGGGGGGGGCGGGGCAAGGACGTTTCGCCG
AAGCCCTTATAGTTTTTAGTGTTTTTTTCTCCCCCGCCCCCGGTGTTTGC
CATCGGGGTTGGGTTTTCGTCGCTTGGCAACGACGTTGTAAAACAAGCCG
CCCCCCCTGGTGTTTGCCATCGGGGTTTGGGTTTTCGTCGCTTGGCAACG
ACGTTGTAAAACAAGCCCCCCACTCGGTGTTTGCCATCGGGATTGGGTTT
TCGTCGCTTGGCAACGACGTTGTAAAACAAGCCAATTCACTTCGTGAACT
CGGCAACCAGGTTACCGTTTTTTTTTTTTTTTTACCTCGTTTTTTTTTTT
TTTGGCGGTAACCATAATGGTGGTCGAGTAGATCATGTTGTGCGGGGTCG
AGAAACCTCACTCCGCGCAACGGGGGATGATCGCACCACGTTGTGTTAAA
ATGGTCAAGCATCCTCGAGGCAGTTACACAGTGCTTACAACTGTATCTGG
AAGTGAAAGCACCAGAAAATAAGTTAAGTCATACGTAGCTGTCATCCGTA
CGCAAGGAAGTAAGCACAAGATGCCGAACACCCTTAGCAGGATGCAGCTC
ACCCTTCATGCGACTCGCCAAATACCTCACGGCGCTTCGCGCTTGGTGAT
GTGAGAGCCTGGTCCGGTGAGAACCCGGCGTGCTCCGTCCCGGCTTTGTA
GGGATGCGAGGTCAATGGTCAAACGACTACGGCATGCACGACTATGAGTA
CACCCCTCGGCCTTGTTTGCCATCGGGGTTTGGGTTTTCGTCGCTTGGCA
ACGACGTTGTAAAACAAGCCGCCCCCGGTGTTTGCCATCGGGGTTTGGGT
TTTCGTCGCTTGGCAACGACCTTGTAAAACAAGCCGCCCCCCCCGGTGTT
TGCCATCGGGGTTTGGGTTTTCGTCGCTTGGCAACGACCTTGTAAAACAA
GCCGCCCCCCCCGGTGTTTGCCATCGGGGTTTGGGTTTTCGTCGCTTGGC
AACGACCTTGTAAAACAAGCCGCCCCCCCCGGTGTTTGCCATCGGGGTTT
GGGTTTTCGTCGCTTGGCAACGACCTTGTAAAACAAGCCCCCCACTCGGT
GTTTGCCATCGGGATTGGGTTTTCGTCGCTTGGCAACGACATTGTAAAAC
AAGCCAATTCACTTCGTGAACTCGGCAACCAGGTTACCGTTTTTTTTTTT
TACCTCGGTTTTTTTTTTGGCGGTAACCACTATGGTGGTAGAGTAGATCA
TGTTGTGCGGGGTCGAGAAGCCTCACTCCGCGCAACGGGGAATGATCGCA
CCACGTTGTGTTAAAATGGTCAAGCATCCTCGAGGCAGTTACACAGTGCT
TACAACTGTCTCTGGAAGTTAAAGCACCAGAAAATAAGTTAAGTCATACG
TAGCTGTCATCCGTACGCAAGGAAGTAAGCACAAGATGCCGAACACCCTT
AGCAGGATGCAGCTCACCCTTCATGCGACTCGCCGAAAACCTCACGGCGC
TTCGCGCTTGGTGATGTGAGAGCCTGGTCCGGTGAGAACCCGGCGTGCTC
CGTCCCGGCTTTGTAGGGATGCGAGGTCAATGGTCTAATGACTACGGCAT
GCACGACTATGAGTACACCCCCCCCCCCCCGGCAAAGTACCCCCCGCCCC
CCCCCGATGTTTGCCATCGGGGTTGGTTTTCGTCGCTTGGCAACGACGTT
GTAAAACAAGCCGCCCCCCCGGTGTTTGCCATCGGGATTGGGTTTTCGTC
GCTTGGCAACGACGTTGTAAAACAAGCCAATTCAGTTCGTGAACTCGGCA
ACCAGGTTACCGGGGGTTTTTTACCTCGTTTTTTTTTTGGCGGTAACCAT
TATGGTGGTAAAGTAGATCATGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTCTTCACATTAAATGTTGTGCGGGGTGGAGAAACCTCACTCCGCGCAA
GGGGGATGGTCGCACCACGTTGTGTTAAAATGGTCAAGCACCCTCGAGGC
AGTTACACAGTGCTTACAACTGTCTCTGGAAGTGAAAGCACCAGAAAATA
AGTTAAGTCATACGCAGCTGTCATCTGTACGCAAGGAAGTAAGCACAAGA
TGCCGAACACCCTTAGTAGGATGCAGCTCACCCTTCATGCGACTCGCCGA
AAACCTCACGGTGCTTCGCGCTTGGTGATTGATGTGAGAGCCTGGTCCTG
TGAGAACCCGGCGTGCTCCGTCCCGGCTTTGTAGGGATGCGAGGTCAATG
GTCTAACGACTACGGCATGCACGACTATGAGTACACCCCCCCGGCAAAGT
ACAAGACAGGGCAATGAACGAGCCTTGAGCCGTCCGACACGTTTGGTGAG
CAGGATTCGGTCCCCGATGCCAGACCTGCGAGACCTTGCATTGCGACTTG
CGCGTCACTCTCGCCCCTTCGCCTTGTGTGTTTTCGTCAAAGTACGGCGT
TTGAAACGTCCAATTGCCCTTTGTTCGCAGGGTTCGGTCCCAGCAGGTGC
CAGACGTTGCATGGCGACTTACGGGCCAAGCTCGAGAGCTGTCCTCCTCG
TGTTTTTTTTTTATTTGCAACAATTCGCATGACGGCGGGTGGGCAACTAT
AACTTAACTTAAAGGGGACTCGTTCTGAAACGTCCAAATGCCGTCTTTTG
TCTTTGCAGGGTACGGTCCCAGGTTCGGGCTCTATGAGGTGGACTTCGAC
ACGCAAAGGCGCACGCTCCGAGATAGTTCCAAGTGAGTCGAGGCGTCTAC
GGTAGGGGATAGGTACCCTGTGGTGATCGTGGGTATATCTCACTGCCGAC
CGAAGGGCCTATCGTACGCGCAGAGTCAAGACCCGCAAGCATTTTTTGTT
CGAAACCTCAGGGCCTTTGATATCTTCACGTTCCTCTACTTCTCAGCTGT
GTGTGTTTTCGTTTTGTTTGTTTGTTTGTTTTTTCGCGCGGGGGGCCCGT
GTGTATGGTTGCTAGAGCACTGAGTACCTGCCGCCGCCGCAGGGCCGGCC
GGACCCCGCCGGGAAGCCAAACGCTTGGGGACCCTTTTCCCAGGTGTTGT
TCGATCAACAGCTCTCGCACAACTAAATTGTTCTTCACACCCTGTTCAAA
ATCCCCCGGCATTGTCTAAGTACAGCATCGCCAATTTTCCCCCTCCGCCG
TAATCAACCACTGTGTGAGCAACGTGAACGACGGCGACAATATCTCCCCG
GCGGCGCGTGTTCCACGACCAGGTACTACGTCGAAGTTGTCAAGAAATAC
TCCGGCAAGAAAGCGTCCTCCGGGCTAGCTCCCGACACGGCGGCAGTTGT
CGGCGAGGGCAACGTCATCGGCAGCCGTGCCGCCATCTACCACAAGCTAA
AGTCCAGCGCCAACGTCTCGGAATACGTCCTGCAGGGGGGCGGTGGCGGT
GCGGAGCCGGGGGAAAGCGGAGAGAGAGATATGGCGGGAGAACCTCCCGC
TGGCTATTCCATAGTTTAGTAAATAGGATTTGAGAGCGTCCTTGTTTAAA
GGCCGGTGAAACCGCTTGGTACGGATGGAATCGTGCCCGGTGCGCGATAC
GAGGCCAGCCAACTTCCTTGGACCGTGGTGGCCTTACCCACGGACCTCTT
GTTCCGCGGGACCCGTTTTTCTTTGCGTGTTGGGGGATGCGCGCGAGCGG
CAAGCAGTACAGTGGTATCGGATCTTGGTGGGAAAGAATTTGGAGCGTAA
GCGCGAGTGGGCGTTTGTGTGGGATTGGCTCCGCACGGCATCATAGGTGA
GGGGAGGGGTACCGAGCCTCATGTTCCCGAACGAGCTGTTGGTGATGTCC
GGTGGAGCGGGTTGTTGGTACATGCATGGCTTTGGGTTGGTGTGCGCTGT
TTCTGCCGCTGCTGCTGTTGCTGCTGTTGATAAGTGTCGGTGTTTTAAGG
TGGGCTGGTGTGTTTCTGCTGCagtcattgggtGTTCTGAGTTCGTTTTC
TGTTTTTCCCTCGTGCTGCTGTTGTTGTGCTATCAGTGGTGATTCGTCAT
GGTTCCGACGTTGCTGCAAGATTTCGTTGTATACACGTGCCACGAGAACT
GCAGGTACTAGTGTAAACATTAATAGAAAGGTGGTGCTCGCACTCCCCCC
CCCCCGGTGAAGTCGGGAAATGTTGTGAAATTGCTTTCGTAGCCATTCCG
TGTCATGAACGCAATGAATGCCTTCACGATCACCGCCACCGCTCCAGAGG
GATGCTCTCTTCACGGGCACGAGGTGTGAGAATCTCCACTATACCCCGGA
ATGCATTGCTTCCCGTCGAGCGTGTTTGTAGCGCCACGCGTTGCTGGAGA
GTCGACATTATGCCCAAGGATAAGCGGCCCATCTGTGTCGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig87:109850..117590+

>mRNA_Ecto-sp6_S_contig87.17787.1 ID=mRNA_Ecto-sp6_S_contig87.17787.1|Name=mRNA_Ecto-sp6_S_contig87.17787.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp6_S_contig87:109850..117590+ (Ectocarpus species6 EcLAC_371)
ATGGAGGAGAAGCTAAGGGCCCTTCCCGCCGAGACCATGACCGACATGCC
GCACTGCGTATACCCGGAGGGTCTCTACTGCGCCCTCAAGGCCATGAGCG
CGATAGGGCACCCGATTTACGTGACCGAGAATGGGATCGCCGACGCTGAT
GACACGCGACGGAGGTGGGTTTTGAGCAACCGACATTCATACAAAACCGT
TAGACCAGATCGGAAGGTGGGCTCGGCGACCGGAAAATCAAGCCAACAGG
GGCATAGACCAAAAGACCAGATCAGGAGGCTGTACTTGAAGAGGTACCTG
TACGCGCTGTCGAGAGCGATCAAGGACGGCTGCGACGTGCGCGGCTACTT
CTACTGGTCTCTCTACGACAACTTCGAGTGGTGTGAAGGGTACGGTCCCA
GGTTCGGGCTCTATGAGGTGGACTTCGACACGCAAAGGCGCACGCTCCGA
GATAGTTCCAAGTACTACGTCGAAGTTGTCAAGAAATACTCCGGCAAGAA
AGCGTCCTCCGGGCTAGCTCCCGACACGGCGGCAGTTGTCGGCGAGGGCA
ACGTCATCGGCAGCCGTGCCGCCATCTACCACAAGCTAAAGTCCAGCGCC
AACGTCTCGGAATACGTCCTGCAGGGGGGCGGTGGCGGTGCGGAGCCGGG
GGAAAGCGGAGAGAGAGATATGGCGGGAGAACCTCCCGCTGGCTATTCCA
TAGTTTAG
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