mRNA_Ecto-sp6_S_contig87.17786.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig87.17786.1
Unique NamemRNA_Ecto-sp6_S_contig87.17786.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig87.17786.1 vs. uniprot
Match: D8LQW6_ECTSI (Beta-glucosidase, family GH1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW6_ECTSI)

HSP 1 Score: 301 bits (771), Expect = 1.230e-98
Identity = 147/153 (96.08%), Postives = 147/153 (96.08%), Query Frame = 1
Query:    1 MLRRAAAXXXXXXVPVTRTQSLALAAWSAACFVAVSLLTAANASRRPLYWKWHHLDTGADELRFPEGFLWGVSTAAHQIEGGNDNNQWSRWENTERPEGQPPTVKGGAKSGKACEHWDRLGEDLRLIQGLGVGSYRFSIEWSKVEPRQGEFDQ 459
            MLRRAAA      VPVTRTQSLALAAWSAACFVAVSLLTAANASRRPLYWKWHHLDTGADELRFPEGFLWGVSTAAHQIEGGNDNNQWSRWENTERPEGQPPTVKGGAKSGKACEHWDRLGEDLRLIQGLGVGSYRFSIEWSKVEPRQGEFDQ
Sbjct:    1 MLRRAAAAATAA-VPVTRTQSLALAAWSAACFVAVSLLTAANASRRPLYWKWHHLDTGADELRFPEGFLWGVSTAAHQIEGGNDNNQWSRWENTERPEGQPPTVKGGAKSGKACEHWDRLGEDLRLIQGLGVGSYRFSIEWSKVEPRQGEFDQ 152          
BLAST of mRNA_Ecto-sp6_S_contig87.17786.1 vs. uniprot
Match: A0A7Y5FKC5_9BACT (Glycoside hydrolase family 1 protein n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A7Y5FKC5_9BACT)

HSP 1 Score: 143 bits (361), Expect = 7.940e-38
Identity = 62/107 (57.94%), Postives = 81/107 (75.70%), Query Frame = 1
Query:  142 LYWKWHHLDTGADELRFPEGFLWGVSTAAHQIEGGNDNNQWSRWENTERPEGQPPTVKGGAKSGKACEHWDRLGEDLRLIQGLGVGSYRFSIEWSKVEPRQGEFDQA 462
            L W W H+DT    +RFP+ FLWGV+T+AHQ+EGG DNN WS WE +    GQP  +K G ++G+ACEHW R  ED++L++ LGV +YRFS+EWSK+EPR GEFD+A
Sbjct:   29 LRWDWDHIDT--KRIRFPQHFLWGVATSAHQVEGGCDNNNWSAWEQSVDASGQP-RIKQGQRAGRACEHWQRYREDIQLMKALGVQAYRFSVEWSKIEPRPGEFDEA 132          
BLAST of mRNA_Ecto-sp6_S_contig87.17786.1 vs. uniprot
Match: A0A7C2TT33_9BACT (Glycosyl hydrolase family protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C2TT33_9BACT)

HSP 1 Score: 139 bits (349), Expect = 3.820e-36
Identity = 62/107 (57.94%), Postives = 78/107 (72.90%), Query Frame = 1
Query:  142 LYWKWHHLDTGADELRFPEGFLWGVSTAAHQIEGGNDNNQWSRWENTERPEGQPPTVKGGAKSGKACEHWDRLGEDLRLIQGLGVGSYRFSIEWSKVEPRQGEFDQA 462
            L W W  +DT   ++ FP GFLWGV+TAAHQ+EGG DNN WS WE T R E   P +K G K+G AC+HW+R  ED+ L+Q LGV +YRFS+EWSK+EP++G FD A
Sbjct:   28 LRWDWQKIDTS--KIHFPAGFLWGVATAAHQVEGGCDNNNWSEWE-TARDENGKPRIKNGQKAGLACDHWNRYKEDIALMQELGVKAYRFSVEWSKIEPQEGLFDLA 131          
BLAST of mRNA_Ecto-sp6_S_contig87.17786.1 vs. uniprot
Match: A0A7Y5G079_9BACT (Glycoside hydrolase family 1 protein (Fragment) n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A7Y5G079_9BACT)

HSP 1 Score: 135 bits (339), Expect = 1.810e-35
Identity = 59/107 (55.14%), Postives = 77/107 (71.96%), Query Frame = 1
Query:  142 LYWKWHHLDTGADELRFPEGFLWGVSTAAHQIEGGNDNNQWSRWENTERPEGQPPTVKGGAKSGKACEHWDRLGEDLRLIQGLGVGSYRFSIEWSKVEPRQGEFDQA 462
            L W W  +D   +++RFP  FLWGV+TAAHQ+EG  DNN WS WEN     GQP  +K G K+G AC+HW+R  ED++L+Q LGV +YRFS+EWSK+EP +GE + A
Sbjct:   29 LRWDWDEIDV--NDIRFPSNFLWGVATAAHQVEGNCDNNNWSAWENAVDASGQP-RIKHGQKAGLACDHWNRYREDIKLMQALGVKAYRFSVEWSKIEPNEGEVNAA 132          
BLAST of mRNA_Ecto-sp6_S_contig87.17786.1 vs. uniprot
Match: A0A3A0DJS8_9BACT (Glycoside hydrolase family 1 protein n=2 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A3A0DJS8_9BACT)

HSP 1 Score: 134 bits (336), Expect = 3.050e-34
Identity = 58/107 (54.21%), Postives = 77/107 (71.96%), Query Frame = 1
Query:  142 LYWKWHHLDTGADELRFPEGFLWGVSTAAHQIEGGNDNNQWSRWENTERPEGQPPTVKGGAKSGKACEHWDRLGEDLRLIQGLGVGSYRFSIEWSKVEPRQGEFDQA 462
            L W W  +D   ++++FP  FLWGV+TAAHQ+EG  DNN WS WEN     GQP  +K G K+G AC+HW+R  ED++L+Q LGV +YRFS+EWSK+EP +GE + A
Sbjct:   29 LRWDWDEIDV--NDIKFPSNFLWGVATAAHQVEGNCDNNNWSAWENAVDASGQP-RIKHGQKAGLACDHWNRYREDIKLMQALGVKAYRFSVEWSKIEPNEGEVNAA 132          
BLAST of mRNA_Ecto-sp6_S_contig87.17786.1 vs. uniprot
Match: A0A7Y5KC02_9BACT (Family 1 glycosylhydrolase n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A7Y5KC02_9BACT)

HSP 1 Score: 130 bits (326), Expect = 8.370e-33
Identity = 57/105 (54.29%), Postives = 75/105 (71.43%), Query Frame = 1
Query:  142 LYWKWHHLDTGADELRFPEGFLWGVSTAAHQIEGGNDNNQWSRWENTERPEGQPPTVKGGAKSGKACEHWDRLGEDLRLIQGLGVGSYRFSIEWSKVEPRQGEFD 456
            L+W W+ ++ G  +++FP  FLWGV+TAAHQ+EG   NN WS WE     +G+P  +K    +GKACEHW R  ED+RL+Q LGV +YRFS+EWSK+EPR GE D
Sbjct:   30 LHWDWNAIEAG--DVQFPHDFLWGVATAAHQVEGDCINNNWSEWERARDEQGRP-RIKNAQVAGKACEHWSRFREDIRLMQTLGVKAYRFSMEWSKIEPRAGEID 131          
BLAST of mRNA_Ecto-sp6_S_contig87.17786.1 vs. uniprot
Match: A0A7S4D568_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D568_HETAK)

HSP 1 Score: 130 bits (327), Expect = 2.220e-32
Identity = 59/106 (55.66%), Postives = 76/106 (71.70%), Query Frame = 1
Query:  142 LYWKWHHLDTGADELRFPEGFLWGVSTAAHQIEGGNDNNQWSRWENTERPEGQPPTVKGGAKSGKACEHWDRLGEDLRLIQGLGVGSYRFSIEWSKVEPRQGEFDQ 459
            +YW W  +DT   +L FP  FLWG STA+HQIEGG DNN WS +E   R     P +K G + G AC+HW+R+ EDL L+Q LGV +YRFS+EWSK+EPR+G++DQ
Sbjct:  137 IYWDWSKIDTR--KLAFPRDFLWGTSTASHQIEGGCDNNNWSAFER--RQVKGEPAIKNGDRVGAACDHWNRVDEDLGLMQELGVNAYRFSLEWSKIEPREGQWDQ 238          
BLAST of mRNA_Ecto-sp6_S_contig87.17786.1 vs. uniprot
Match: A0A2E2NRZ1_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E2NRZ1_9DELT)

HSP 1 Score: 128 bits (321), Expect = 4.470e-32
Identity = 64/140 (45.71%), Postives = 93/140 (66.43%), Query Frame = 1
Query:   46 VTRTQSLALAAWSAACFVAVSLLTAANASRRPL-YWKWHHLDTGADELRFPEGFLWGVSTAAHQIEGGNDNNQWSRWENTERPEGQPPTVKGGAKSGKACEHWDRLGEDLRLIQG-LGVGSYRFSIEWSKVEPRQGEFDQ 459
            +T    L +  W AAC    +LL+    SR P   W W ++DT   ++ FP+ FLWG +TAAHQ++GGN NN W+RWE++   +G+P  +  G ++G A EHW+R  ED++L++  LG+ SYRFSIEWS+VEP +G FD+
Sbjct:    4 ITLVLGLLVIGWIAAC----ALLS----SRHPEPIWDWENIDTS--DISFPKNFLWGSATAAHQVDGGNTNNNWARWEDSFNEKGEP-RIHNGDRAGNAAEHWERYPEDIQLMRDELGLNSYRFSIEWSRVEPEEGRFDE 132          
BLAST of mRNA_Ecto-sp6_S_contig87.17786.1 vs. uniprot
Match: A0A2M7U9C8_9BACT (Glycoside hydrolase family 1 protein n=4 Tax=Candidatus Marinimicrobia TaxID=62680 RepID=A0A2M7U9C8_9BACT)

HSP 1 Score: 127 bits (319), Expect = 9.060e-32
Identity = 58/104 (55.77%), Postives = 72/104 (69.23%), Query Frame = 1
Query:  148 WKWHHLDTGADELRFPEGFLWGVSTAAHQIEGGNDNNQWSRWENTERPEGQPPTVKGGAKSGKACEHWDRLGEDLRLIQGLGVGSYRFSIEWSKVEPRQGEFDQ 459
            W W   DT   E+ FP+ FLWGV+TAAHQ+EGG  NN WSRWEN    +G P  +K G  +G ACE+W R  ED+ LI+ LG  +YR S+EWSK+EPR GEFD+
Sbjct:   38 WDWEWTDTS--EVAFPKRFLWGVATAAHQVEGGCTNNNWSRWENGATTDGSPH-IKTGEVTGAACENWTRYPEDIELIRELGCNAYRMSVEWSKIEPRLGEFDE 138          
BLAST of mRNA_Ecto-sp6_S_contig87.17786.1 vs. uniprot
Match: A0A7Z9Q278_9BACT (Glycoside hydrolase family 1 protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A7Z9Q278_9BACT)

HSP 1 Score: 126 bits (316), Expect = 2.220e-31
Identity = 59/103 (57.28%), Postives = 72/103 (69.90%), Query Frame = 1
Query:  148 WKWHHLDTGADELRFPEGFLWGVSTAAHQIEGGNDNNQWSRWENTERPEGQPPTVKGGAKSGKACEHWDRLGEDLRLIQGLGVGSYRFSIEWSKVEPRQGEFD 456
            W W   +T    L FP GF+WGV+TAAHQ+EGG  NN WS WENT    G P   KG  KSG AC+HW+R  ED+ LI+ LGV  YRFS+EWSK+EP++G+FD
Sbjct:   30 WDWEKEETKT--LSFPPGFVWGVATAAHQVEGGCTNN-WSEWENTPDENGNPRIHKGN-KSGMACDHWNRYREDIGLIESLGVDMYRFSVEWSKIEPQEGQFD 128          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig87.17786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQW6_ECTSI1.230e-9896.08Beta-glucosidase, family GH1 n=1 Tax=Ectocarpus si... [more]
A0A7Y5FKC5_9BACT7.940e-3857.94Glycoside hydrolase family 1 protein n=1 Tax=candi... [more]
A0A7C2TT33_9BACT3.820e-3657.94Glycosyl hydrolase family protein n=1 Tax=bacteriu... [more]
A0A7Y5G079_9BACT1.810e-3555.14Glycoside hydrolase family 1 protein (Fragment) n=... [more]
A0A3A0DJS8_9BACT3.050e-3454.21Glycoside hydrolase family 1 protein n=2 Tax=candi... [more]
A0A7Y5KC02_9BACT8.370e-3354.29Family 1 glycosylhydrolase n=1 Tax=candidate divis... [more]
A0A7S4D568_HETAK2.220e-3255.66Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2E2NRZ1_9DELT4.470e-3245.71Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A2M7U9C8_9BACT9.060e-3255.77Glycoside hydrolase family 1 protein n=4 Tax=Candi... [more]
A0A7Z9Q278_9BACT2.220e-3157.28Glycoside hydrolase family 1 protein n=1 Tax=Candi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig87contigEcto-sp6_S_contig87:105804..107412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score303.5
Seed ortholog evalue5.5e-80
Seed eggNOG ortholog2880.D8LQW6
Model size463
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.beta-glucosidase activity
EggNOG OGsCOG2723@1,KOG0626@2759
Ec32 ortholog descriptionBeta-glucosidase, family GH1
Ec32 orthologEc-07_001850.3
Cds size462
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350494.2179542-CDS-Ecto-sp6_S_contig87:105803..1060901682350494.2179542-CDS-Ecto-sp6_S_contig87:105803..106090Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 105804..106090 +
1682350494.236991-CDS-Ecto-sp6_S_contig87:106954..1070741682350494.236991-CDS-Ecto-sp6_S_contig87:106954..107074Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 106955..107074 +
1682350494.2501817-CDS-Ecto-sp6_S_contig87:107357..1074121682350494.2501817-CDS-Ecto-sp6_S_contig87:107357..107412Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 107358..107412 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig87.17786.1prot_Ecto-sp6_S_contig87.17786.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig87 105804..107412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig87.17786.1

>prot_Ecto-sp6_S_contig87.17786.1 ID=prot_Ecto-sp6_S_contig87.17786.1|Name=mRNA_Ecto-sp6_S_contig87.17786.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=154bp
MLRRAAAAAAAAAVPVTRTQSLALAAWSAACFVAVSLLTAANASRRPLYW
KWHHLDTGADELRFPEGFLWGVSTAAHQIEGGNDNNQWSRWENTERPEGQ
PPTVKGGAKSGKACEHWDRLGEDLRLIQGLGVGSYRFSIEWSKVEPRQGE
FDQA
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mRNA from alignment at Ecto-sp6_S_contig87:105804..107412+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig87.17786.1 ID=mRNA_Ecto-sp6_S_contig87.17786.1|Name=mRNA_Ecto-sp6_S_contig87.17786.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1609bp|location=Sequence derived from alignment at Ecto-sp6_S_contig87:105804..107412+ (Ectocarpus species6 EcLAC_371)
ATGCTACGGCGCGCCGCCGCCGCCGCCGCCGCCGCCGCCGTCCCCGTCAC CCGGACACAGTCCCTCGCGCTCGCGGCCTGGTCCGCAGCCTGCTTCGTGG CCGTCTCCCTTCTTACCGCCGCCAACGCCTCGAGGCGGCCTCTGTACTGG AAGTGGCACCACCTGGACACAGGGGCCGACGAGCTGCGTTTCCCGGAGGG TTTCCTGTGGGGCGTTTCGACCGCGGCGCACCAGATCGAGGGGGGAAACG ACAACAATCAGTGGAGCCGATGGGAGAACACCGAGAGGTAATTTGTACTT TTATGACAAAGAATATACGTAACATTATGTTTGTTTTTTCGTATTTTGGA CGAAACGTTTTTTGTTTTTTTCACAACCACAGTAGCAGCAGTGACGTACC TGCCAATGCCTCGATTTCGGTAGAACCCGTTGGGGGGGGTACTCATAGCC ATGTATGCCGTAGTTTGAATCGGTCGGTGGGGATTTTTTTGTGGTTGGGT TGTGCTGTTCAACTTCCTCGTGGTGCGGCGTAAGAGGGCCATAATAAGTA CCAGTAGTACGTAGGTCTCGTTCGTTTGGGGCCCTGCAGAGTAAAGTTCA GTGCTAGGTGTGGGTGCGAGGTTTGGATGTTAGAGTACAGAGTTTGACGC TTGGCGCGACACATGTACTGTACACAGATGAAAATGTGTCCGCTCGCTAG TTCTGTATCGAGGTGGGGAGTGACGGCCAAGAACGAAGAGGAAAGGGGAG TGACGGCCAAGAACGAAGAGGAAATGGGGTTGCATAAGACGAGCATTTGT TGCGGCTGTTTTCTGGCATTTGGAGCGTTTTCTGTGTGGCGGCCGATTAG AGCCACTAGGCAGAAAATGCTGTGAGCGGTGATGTAAAGTGATGAACAAA AAATAAGGCTCGGTGTCGGCACTTGTGTGTCTGCATGCATGCCCCCGTAC GTGCGGTGTCTGGAGGTGTCCGAAGCACCACCAACATTGGTCAATCTGTC TCAACCAAGCCTTGAAGTGCACACCCCGACCTGCTGAAGTATTCACCACA GCACAGCAAACACAGCACAACGCGCCCATTCCTACAGCAGTATGGAGTTG GACCAATAAAATCGGCGTGCTCGGCTGCATTCGCGAAATTGAACTAACCA GGCCCGAGGGGCAGCCGCCAACGGTCAAGGGAGGGGCGAAGAGCGGCAAG GCGTGCGAGCACTGGGACCGGCTGGGGGAGGACCTGAGGCTGATCCAAGG GCTCGGGGTGGGCAGCTACAGGTAGGTGAAGAAGGCAGGGCGTGTAACGA AGATATACAATAAGCACGCACGAAGGCTGCATGCTTCACGGATGCTGTTG TGGAATGCCGCACCCACCAACTTGATATGACATGGCAGGGTAGAAGTTGG ACGGGTATGCTTGAACTTGTGCGTAATACTGCATATAGTCAATGATGGCA CACTCACGTCCAAAAGTTTCCGCACTTGGCCACGATTGATTTCGTTTTTT TCTTTTTCTCCACGCGAACTTGTCCCGCGAAATGCTGATGCGACGTGCTT TCAGGTTCAGCATCGAGTGGTCGAAGGTGGAGCCGCGGCAAGGAGAGTTT GATCAGGCG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig87:105804..107412+

>mRNA_Ecto-sp6_S_contig87.17786.1 ID=mRNA_Ecto-sp6_S_contig87.17786.1|Name=mRNA_Ecto-sp6_S_contig87.17786.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=462bp|location=Sequence derived from alignment at Ecto-sp6_S_contig87:105804..107412+ (Ectocarpus species6 EcLAC_371)
ATGCTACGGCGCGCCGCCGCCGCCGCCGCCGCCGCCGCCGTCCCCGTCAC
CCGGACACAGTCCCTCGCGCTCGCGGCCTGGTCCGCAGCCTGCTTCGTGG
CCGTCTCCCTTCTTACCGCCGCCAACGCCTCGAGGCGGCCTCTGTACTGG
AAGTGGCACCACCTGGACACAGGGGCCGACGAGCTGCGTTTCCCGGAGGG
TTTCCTGTGGGGCGTTTCGACCGCGGCGCACCAGATCGAGGGGGGAAACG
ACAACAATCAGTGGAGCCGATGGGAGAACACCGAGAGGCCCGAGGGGCAG
CCGCCAACGGTCAAGGGAGGGGCGAAGAGCGGCAAGGCGTGCGAGCACTG
GGACCGGCTGGGGGAGGACCTGAGGCTGATCCAAGGGCTCGGGGTGGGCA
GCTACAGGTTCAGCATCGAGTGGTCGAAGGTGGAGCCGCGGCAAGGAGAG
TTTGATCAGGCG
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