mRNA_Ecto-sp6_S_contig86.17748.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig86.17748.1
Unique NamemRNA_Ecto-sp6_S_contig86.17748.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig86.17748.1 vs. uniprot
Match: A0A6H5KXU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXU8_9PHAE)

HSP 1 Score: 655 bits (1691), Expect = 3.710e-231
Identity = 348/399 (87.22%), Postives = 357/399 (89.47%), Query Frame = 1 
Query:    1 MVSSRKFAVVCGLDLLHGVSAWLPSPLRVPTSTTTGQHRAVRNIVAGEHHDVRQQWAALRSVADGEGGEGAGRPDLASMKRSFEGTMDNKLIMEYVMELRSRKALLLSSLEETGGVITDDIYPIMEELALVNPSSGCGVGKDLGKSHYCAMLPGHWIAASTIVPNVPFVYGDGEKATNRLPSSRGAGPTCTLGELVSSISGRPVSGGELEYNADTPVRPLRARISALTNTVKDGEMPTVVAVAGFSPAAEAQPVKATVSATGAAAXXXXEDPKDAQAKGLAAAMVEAAARXXXXXXXXGGAGVRAEGFGRVADVVLTEDGAVRGRGKWGVSGGYHLRWEFNTMNLDLGGDKIVKAGGEGGDGGRNLYEFFLDQNMLIVAWKDAPKKDDAVVFVRDEVPR 1197
            MVSSR  AVVCG+DLLHGVSAWLPSPLRV TST T Q  AVR+IVAGEH DVRQQW+ALRSVADGEG  GAGRPDLASMKRSFEGTMDNKLIMEYV ELRSRKALLLSSLEETGGVITDDIYPIMEELALVNPSSGCGVGKD GKSHYCAMLPGHWIAASTIVPNVPFVYGDGEK+TNR PSSRGAGPTCTLGELVSSISGRPV+GG+LEYNADTPVRPLRARISALTNTVKDGEMPTVVAVAGFSPAAEAQPVKAT SA G   XXXX                     XXXXXXXX GAGVR EGFGRVADVVLTEDGAVRGRGKWGV GGYHLRWEFNTMNLDLGGDKIVKAGGEGGDGGR+LYEFFLDQNMLIVAWKD+PKK+DAVVFVRDEVPR
Sbjct:    1 MVSSRTLAVVCGVDLLHGVSAWLPSPLRVSTSTATDQRWAVRDIVAGEHRDVRQQWSALRSVADGEGDGGAGRPDLASMKRSFEGTMDNKLIMEYVTELRSRKALLLSSLEETGGVITDDIYPIMEELALVNPSSGCGVGKDQGKSHYCAMLPGHWIAASTIVPNVPFVYGDGEKSTNRSPSSRGAGPTCTLGELVSSISGRPVTGGQLEYNADTPVRPLRARISALTNTVKDGEMPTVVAVAGFSPAAEAQPVKATGSAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGVRTEGFGRVADVVLTEDGAVRGRGKWGVRGGYHLRWEFNTMNLDLGGDKIVKAGGEGGDGGRDLYEFFLDQNMLIVAWKDSPKKEDAVVFVRDEVPR 399
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BLAST of mRNA_Ecto-sp6_S_contig86.17748.1 vs. uniprot
Match: D7G1F7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1F7_ECTSI)

HSP 1 Score: 536 bits (1381), Expect = 1.740e-185
Identity = 290/315 (92.06%), Postives = 293/315 (93.02%), Query Frame = 1 
Query:  259 MDNKLIMEYVMELRSRKALLLSSLEETGGVITDDIYPIMEELALVNPSSGCGVGKDLGKSHYCAMLPGHWIAASTIVPNVPFVYGDGEKATNRLPSSRGAGPTCTLGELVSSISGRPVSGGELEYNADTPVRPLRARISALTNTVKDGEMPTVVAVAGFSPAAEAQPVKATVSATGAAAXXXXEDP--KDAQAKGLAAAMVEAAARXXXXXXXXGGAGVRAEGFGRVADVVLTEDGAVRGRGKWGVSGGYHLRWEFNTMNLDLGGDKIVKAGGEGGDGGRNLYEFFLDQNMLIVAWKDAPKKDDAVVFVRDEVPR 1197
            MDNKLIMEYVMELRSRKALLLSSLEETGGVITDDIYPIMEELALVNPSSGCGVGKDLGKSHYCAMLPGHWIAASTIVPNVPFVYGDGEKATNR PSSRGAGPTCTLGELVSSISGRPVSGGELEYNADTPVRPLRARISALTNTVKDGEMPTVVAVAGFSPAAEAQPVKAT SA G   XXXX     KDAQAK LA         XXXXXXXX GAGVRAEGFGRVADVVLTEDGAVRGRGKWGV+GGYHLRWEFNTMNLDLGGDKIVKAGGEGGDGGR+LYEFFLDQNMLIVAWKDAPKK+DAVVFVRDEVPR
Sbjct:    1 MDNKLIMEYVMELRSRKALLLSSLEETGGVITDDIYPIMEELALVNPSSGCGVGKDLGKSHYCAMLPGHWIAASTIVPNVPFVYGDGEKATNRSPSSRGAGPTCTLGELVSSISGRPVSGGELEYNADTPVRPLRARISALTNTVKDGEMPTVVAVAGFSPAAEAQPVKATGSAAGXXXXXXXXXXXXKDAQAKALAXXXXXXXXXXXXXXXXXXGAGVRAEGFGRVADVVLTEDGAVRGRGKWGVTGGYHLRWEFNTMNLDLGGDKIVKAGGEGGDGGRDLYEFFLDQNMLIVAWKDAPKKEDAVVFVRDEVPR 315
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig86.17748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXU8_9PHAE3.710e-23187.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1F7_ECTSI1.740e-18592.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig86contigEcto-sp6_S_contig86:416475..420449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1992
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_000850.1
Cds size1200
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350490.090358-CDS-Ecto-sp6_S_contig86:416474..4167651682350490.090358-CDS-Ecto-sp6_S_contig86:416474..416765Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 416475..416765 +
1682350490.1013505-CDS-Ecto-sp6_S_contig86:418079..4182481682350490.1013505-CDS-Ecto-sp6_S_contig86:418079..418248Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 418080..418248 +
1682350490.1115553-CDS-Ecto-sp6_S_contig86:418917..4196571682350490.1115553-CDS-Ecto-sp6_S_contig86:418917..419657Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 418918..419657 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350490.121661-UTR-Ecto-sp6_S_contig86:419657..4204491682350490.121661-UTR-Ecto-sp6_S_contig86:419657..420449Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig86 419658..420449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig86.17748.1prot_Ecto-sp6_S_contig86.17748.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig86 416475..419657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig86.17748.1

>prot_Ecto-sp6_S_contig86.17748.1 ID=prot_Ecto-sp6_S_contig86.17748.1|Name=mRNA_Ecto-sp6_S_contig86.17748.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=400bp
MVSSRKFAVVCGLDLLHGVSAWLPSPLRVPTSTTTGQHRAVRNIVAGEHH
DVRQQWAALRSVADGEGGEGAGRPDLASMKRSFEGTMDNKLIMEYVMELR
SRKALLLSSLEETGGVITDDIYPIMEELALVNPSSGCGVGKDLGKSHYCA
MLPGHWIAASTIVPNVPFVYGDGEKATNRLPSSRGAGPTCTLGELVSSIS
GRPVSGGELEYNADTPVRPLRARISALTNTVKDGEMPTVVAVAGFSPAAE
AQPVKATVSATGAAAGGGGEDPKDAQAKGLAAAMVEAAAREPRAAAAAGG
AGVRAEGFGRVADVVLTEDGAVRGRGKWGVSGGYHLRWEFNTMNLDLGGD
KIVKAGGEGGDGGRNLYEFFLDQNMLIVAWKDAPKKDDAVVFVRDEVPR*
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mRNA from alignment at Ecto-sp6_S_contig86:416475..420449+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig86.17748.1 ID=mRNA_Ecto-sp6_S_contig86.17748.1|Name=mRNA_Ecto-sp6_S_contig86.17748.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3975bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:416475..420449+ (Ectocarpus species6 EcLAC_371)
ATGGTTTCTTCTCGAAAATTCGCCGTCGTTTGTGGCCTGGATCTTTTGCA
TGGTGTATCAGCATGGCTGCCAAGCCCACTCAGAGTGCCCACCAGCACTA
CTACAGGCCAGCATCGGGCTGTTAGAAATATTGTAGCAGGGGAACATCAT
GATGTGCGGCAGCAATGGGCGGCGCTTCGCAGCGTCGCTGATGGGGAGGG
GGGCGAGGGGGCGGGCCGGCCTGATCTGGCATCGATGAAGCGTTCGTTTG
AGGGTACCATGGACAACAAGCTCATCATGGAGTACGTGATGGTGAGAGTT
TGAATCCAACGCTCCGGGCAACGACACATGTTTTGCAACAAAGAACATGC
ACGTTGCAGCACCTGTATCGTGTTCACAGCAGCGCAAGAACTGGAGCAGC
TTTGCTCCAGCATCGTTCCTCGATCATGTCGTGTTGGCTGCGAATGCGGG
TGACTCCTTGTTGTATTGAAAAGGAGCAGCAGCGGCAGCCGCAGGATCGT
ATTTTGGCAAATAATGACAGCGTCGCTCTTATGTCGATACATTGTAGAGG
GTGTTCGCGGATCTTTCAATGTTTTGGTTTTCTACGAGACTTGCAGCCTC
CCCGCTCCTAGATTATTGGTGGCTCTCCTCCGTACATGGACTCGCATGTA
CAAGGGTACACAGAGAACAGCAACTTTCAAACATCGTCGCCATTTTCCCC
CTTACTCGGTATTTGGCTTCAGCTTTTCCAGCTCATGTCCTCAGCGGCTG
CTGCTGCTGGCGCGCCACGAGCAGCCAAGTGCCGCACAGAGTGCCCCAAC
AGGCGTATTCCTTTGACCATATAGTACTGCAGCACCAACAACTGCAGCCT
TCCATCAATTTACTGCTGTTCACACCCCATCCGCTTAGTTTTGTTTTTAC
CCCTACATCGGAAAAGACAACAGCAGTAAAGTGGCGCTCGCTTAGACATT
GCAGCGCCGCCCTTGTGTGACCTTGAGGGTCGACCTTCACACTGCTATCG
TCGCGCCGACGTCCAGGTCAAGAAATAGCTTGTGTCCGCGCATCGTACTA
TTGCCTGCTCCTCCCAACGTCGCCGACGAATTCCTTGTTCTGCCTGCGGT
GTTGGGTACATGTGCTTGGCATGCGTGCTCGGTGGCAGAACTCGGCATTG
TCTCCCACAAGCGAGGTTCTGCTTGACAGCAATGTCTTCACCCCAAGAAC
CGCTGATTAGCGGGTACTGCTGCCCCACTCCTTTGTTTCCCACTGGGTTT
CGACGATCCGTCTTTCCCTGGCGTTCTTTGTCGAATGCAACCGTGTTGGT
TTTCTTTTCTCTGCACATTGAGGTGCTCGTCTTTTCTACCTCTCGTTTAG
GCTTCTGACGCAACCACATGACCGTCGTACATTGCTCTACCATGATCACT
CCAAGTAGAGCATTTGCTTCAACAACAATAGCTGACCAGCTCGACTTTTA
CCCACGTACCCCATTTATCCACCTGACACGCTCCGCCTGGGCTAGGTAAA
TGCTTTAAGTGTTCGCTCTCCTCTCTGTCCCTGTCTCTGTCTCTGTCTCT
GTCTCTGGTTCTGTCTCATGTCTCTCGTACGGAATCTCGTCACGACGTTT
CCCAGGAACTACGATCACGCAAAGCTCTTCTGCTGTCGTCCTTGGAAGAA
ACGGGGGGTGTCATCACCGACGACATTTACCCTATCATGGAGGAACTTGC
CCTGGTCAACCCTTCCTCGGGGTGCGGGGTGGGCAAGGACCTGGGGAAGT
CGCACTACTGCGCGATGCTTCCAGGTGCGCGTGTCTGTAATGTTGGCACC
AACCGCGCTAACCGCCTAACTAATGATGAAATACTGCGTCAGTCTCAGTG
CGTCTGATTACAGAGAGCCCTTCTGCAGGCCATGATCTGCGACCCCCGTG
AGGGGGTATCAGGCTAGGCTATTGTCCGGTGTAGGACGTAAACGATGAAG
CAGAAAATGTCTGTGTGTGTAGTTTCCATCTACCGCGCTAACCGGCTGAC
GAAGGAAAGGCCGCCGGTCTATGAAGCAGGGTACAAAAGTTGAACACTCT
AGCTATCGGTGTGCGTGCGGGGGTGCTGTCTTGCCTCCTGCTGGTGAGGA
ACAAGTTGCGCGCGTTGGAGGCTGCGAGATTGTGTGGAGACTAGAAATAA
CATATCCGGCTTGCCACGTGGTTCTAGCCTTGAGCAATGCGGTTTCTTCT
CCGCGGGTCGGAGCACATCCAAATGTTGTGGGCGTTAGATGCACTTTTCT
TGTTGTTCCTCGGCAGCAGACGCACCGTTTCGGACAGGATTCCTCGACAG
ACACAGCGAAAAATTTCAGGGAAGCAGTAATAACACTCAACGCTCCTTTT
ACCGGCCCTGTTAACGCCCCCCTCCCCTTGGAAACGCCCTTTTCCCCTTC
GGAAACCCCACGGTTCGTCGGAATCATGATGATGCATGACCAGGGCACTG
GATCGCCGCCTCCACCATCGTCCCGAACGTACCCTTCGTCTACGGAGACG
GCGAGAAGGCCACCAACCGCTTGCCTTCATCCAGAGGTGCCGGCCCGACG
TGCACCCTGGGCGAGCTTGTTTCATCCATCTCCGGAAGACCTGTCTCCGG
CGGCGAACTAGAGTACAACGCCGACACCCCGGTGCGGCCCCTCCGGGCGC
GAATCAGCGCCTTGACCAACACCGTCAAGGACGGCGAGATGCCCACCGTA
GTCGCGGTCGCCGGCTTCTCCCCGGCGGCGGAGGCGCAGCCGGTCAAGGC
CACCGTGTCTGCGACGGGAGCTGCGGCCGGGGGCGGCGGCGAAGACCCGA
AGGATGCCCAGGCGAAGGGTCTCGCGGCCGCGATGGTGGAGGCCGCGGCG
AGGGAACCGCGGGCGGCGGCGGCTGCCGGAGGGGCCGGCGTCCGCGCGGA
AGGGTTCGGGAGAGTGGCCGACGTGGTCCTGACGGAGGATGGGGCGGTGC
GGGGAAGGGGCAAGTGGGGGGTTAGCGGGGGTTACCACCTCAGGTGGGAG
TTCAACACCATGAACTTGGACCTGGGCGGGGACAAGATCGTGAAGGCGGG
GGGGGAGGGCGGCGATGGCGGGAGAAACCTGTACGAGTTTTTCTTGGATC
AGAACATGCTGATCGTGGCGTGGAAGGACGCGCCCAAGAAGGACGACGCC
GTGGTCTTCGTGCGGGACGAGGTTCCTCGGTGACGCGCCTTGGGGCGTAC
CAATCCGCGGGCGACAGGCACTGGTGTTCACAGCTCTGTCTTGCTCGGAG
AGTCTTGATAATTTATTTCTGATACTGTTCGCATAGGGATTTTGCACCAG
CTATTTTTGTGATGAGATGTATGGCTTTGTTTCCGACGCTCCCTTGTCCG
AATTCCTCGTGTGGTGCTCGTGCCGACGATGCCAAGTGTGAAGGGCGATG
GTTGGCTGCGGGCCGCTTTGTTTGTTCTTTGGCCCGCAATCGTGTGGAAA
TGGCATGTTGACTTTGTTGCGGGGAGAGGGTTCTGAACCTTGAAGGCTTC
CAAGCTTGGCTGGCATCTGTGGCGTGTATGCAGATAGCCTTTCCATGGGG
TCAGAGGTTAGTATTCCTCTCCCCGCCGTGCTGAAGGTGACTCGAGTCAA
CTTGATCCTTTACACCGTCATGTTTACGGTGGCGGCGGCGCTCAGCCACA
TATATCATTGTACTTTGGGTTGGTGTTGGTGTTGGTTGAGCTTACGGTTT
GATGGAGCAGCATGCCTGGAAGATGTCAAGTGTAGACACCGACGCCGCTG
ATCCGTCTTTCTTGACCAAGTCTTGTTTTCGTCACGATGTCCCCCACTTT
GTTCTACTCCACTTGCGGAGCACAGCCTTCAAGCCCCCCGTGTGCCCACC
AATAAGAGCGTCTCGGTCATGGTTTCTAGATACCGGTCGCCCCTGTTGTT
CAGTTGTGGCGACCTCATAACCTTGTGACCCTCTGCATTGCGGGTTCGAA
TCTCGCGGGAGTGAATAATCGGCGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig86:416475..420449+

>mRNA_Ecto-sp6_S_contig86.17748.1 ID=mRNA_Ecto-sp6_S_contig86.17748.1|Name=mRNA_Ecto-sp6_S_contig86.17748.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1200bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:416475..420449+ (Ectocarpus species6 EcLAC_371)
ATGGTTTCTTCTCGAAAATTCGCCGTCGTTTGTGGCCTGGATCTTTTGCA
TGGTGTATCAGCATGGCTGCCAAGCCCACTCAGAGTGCCCACCAGCACTA
CTACAGGCCAGCATCGGGCTGTTAGAAATATTGTAGCAGGGGAACATCAT
GATGTGCGGCAGCAATGGGCGGCGCTTCGCAGCGTCGCTGATGGGGAGGG
GGGCGAGGGGGCGGGCCGGCCTGATCTGGCATCGATGAAGCGTTCGTTTG
AGGGTACCATGGACAACAAGCTCATCATGGAGTACGTGATGGAACTACGA
TCACGCAAAGCTCTTCTGCTGTCGTCCTTGGAAGAAACGGGGGGTGTCAT
CACCGACGACATTTACCCTATCATGGAGGAACTTGCCCTGGTCAACCCTT
CCTCGGGGTGCGGGGTGGGCAAGGACCTGGGGAAGTCGCACTACTGCGCG
ATGCTTCCAGGGCACTGGATCGCCGCCTCCACCATCGTCCCGAACGTACC
CTTCGTCTACGGAGACGGCGAGAAGGCCACCAACCGCTTGCCTTCATCCA
GAGGTGCCGGCCCGACGTGCACCCTGGGCGAGCTTGTTTCATCCATCTCC
GGAAGACCTGTCTCCGGCGGCGAACTAGAGTACAACGCCGACACCCCGGT
GCGGCCCCTCCGGGCGCGAATCAGCGCCTTGACCAACACCGTCAAGGACG
GCGAGATGCCCACCGTAGTCGCGGTCGCCGGCTTCTCCCCGGCGGCGGAG
GCGCAGCCGGTCAAGGCCACCGTGTCTGCGACGGGAGCTGCGGCCGGGGG
CGGCGGCGAAGACCCGAAGGATGCCCAGGCGAAGGGTCTCGCGGCCGCGA
TGGTGGAGGCCGCGGCGAGGGAACCGCGGGCGGCGGCGGCTGCCGGAGGG
GCCGGCGTCCGCGCGGAAGGGTTCGGGAGAGTGGCCGACGTGGTCCTGAC
GGAGGATGGGGCGGTGCGGGGAAGGGGCAAGTGGGGGGTTAGCGGGGGTT
ACCACCTCAGGTGGGAGTTCAACACCATGAACTTGGACCTGGGCGGGGAC
AAGATCGTGAAGGCGGGGGGGGAGGGCGGCGATGGCGGGAGAAACCTGTA
CGAGTTTTTCTTGGATCAGAACATGCTGATCGTGGCGTGGAAGGACGCGC
CCAAGAAGGACGACGCCGTGGTCTTCGTGCGGGACGAGGTTCCTCGGTGA
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