mRNA_Ecto-sp6_S_contig86.17745.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig86.17745.1
Unique NamemRNA_Ecto-sp6_S_contig86.17745.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig86.17745.1 vs. uniprot
Match: D7G1F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1F9_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 3.100e-25
Identity = 55/78 (70.51%), Postives = 56/78 (71.79%), Query Frame = 3 
Query:   69 LQSTSHRGGRPRRSGRLHAASKCGVWCIVHASRTAGEARLRVGPRYPGRNLPSAPNLPNVQALCGPQQACRAGVNEAT 302
            L  TS RGGR RRSGRLHAA                EARLRVGPRYPGRNL SAPNLP+VQALCGPQQA RAGVNEAT
Sbjct:   12 LLPTSRRGGRTRRSGRLHAAR---------------EARLRVGPRYPGRNLHSAPNLPDVQALCGPQQAYRAGVNEAT 74
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig86.17745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1F9_ECTSI3.100e-2570.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig86contigEcto-sp6_S_contig86:389234..389927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size303
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350485.4781227-CDS-Ecto-sp6_S_contig86:389233..3893621682350485.4781227-CDS-Ecto-sp6_S_contig86:389233..389362Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 389234..389362 -
1682350485.4893246-CDS-Ecto-sp6_S_contig86:389753..3899271682350485.4893246-CDS-Ecto-sp6_S_contig86:389753..389927Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 389754..389927 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig86.17745.1prot_Ecto-sp6_S_contig86.17745.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig86 389234..389927 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig86.17745.1

>prot_Ecto-sp6_S_contig86.17745.1 ID=prot_Ecto-sp6_S_contig86.17745.1|Name=mRNA_Ecto-sp6_S_contig86.17745.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=101bp
MAPDEDAGLLCDVAHPNVPTGSYFSLPATEVADREEAGAFTQRASAGCGA
SSMQVEPQEKRDFAWDRGTRDETSPQPPTCRMYKPFADHNKPVALESTKP
R
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mRNA from alignment at Ecto-sp6_S_contig86:389234..389927-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig86.17745.1 ID=mRNA_Ecto-sp6_S_contig86.17745.1|Name=mRNA_Ecto-sp6_S_contig86.17745.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=694bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:389234..389927- (Ectocarpus species6 EcLAC_371)
ATGGCGCCCGATGAAGACGCCGGTCTCCTTTGCGACGTCGCACACCCGAA
CGTGCCGACGGGGTCGTACTTCAGTCTACCAGCCACCGAGGTGGCCGACC
GCGAAGAAGCGGGCGCCTTCACGCAGCGAGCAAGTGCGGGGTGTGGTGCA
TCGTCCATGCAAGTCGAACCGCAGGTAGATGCAGCCACCCTGCTTGCATA
CCAACGTAGTCGGTTGCGTTGTGGGTTGGGTGAGGCTGCTCGTTTCTGAG
CCCTTGAAAGCGGCCCACGAGCTGGCTGAAGAGATATTCACGAGGCAGAA
GCATTTGTGGAAAACGACATGTATGCGTGGAGTGGCCTTTAGTACGTTCT
CCGAGGTACCTTGTGGCCTTCTGTGGATGATGTTTCGGAGGAGAGTTGAC
CTCACGATAACTCTTCACGAAATTGGTTGCTATATGGGAGACCAAGCGGA
GAGGTATTGCTTATATCATTTTTTTTCTGAAGGCCTCAACACTAAGTTTC
CCCCCAAAATTCGTCTTCGCGCTACCCACGGCCTCTTTTTGGTTTTGCCA
CTGTTTCGGTCGCAGGAGAAGCGAGACTTCGCGTGGGACCGAGGTACCCG
GGACGAAACCTCCCCTCAGCCCCCAACCTGCCGAATGTACAAGCCCTTTG
CGGACCACAACAAGCCTGTCGCGCTGGAGTCAACGAAGCCACGT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig86:389234..389927-

>mRNA_Ecto-sp6_S_contig86.17745.1 ID=mRNA_Ecto-sp6_S_contig86.17745.1|Name=mRNA_Ecto-sp6_S_contig86.17745.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:389234..389927- (Ectocarpus species6 EcLAC_371)
ATGGCGCCCGATGAAGACGCCGGTCTCCTTTGCGACGTCGCACACCCGAA
CGTGCCGACGGGGTCGTACTTCAGTCTACCAGCCACCGAGGTGGCCGACC
GCGAAGAAGCGGGCGCCTTCACGCAGCGAGCAAGTGCGGGGTGTGGTGCA
TCGTCCATGCAAGTCGAACCGCAGGAGAAGCGAGACTTCGCGTGGGACCG
AGGTACCCGGGACGAAACCTCCCCTCAGCCCCCAACCTGCCGAATGTACA
AGCCCTTTGCGGACCACAACAAGCCTGTCGCGCTGGAGTCAACGAAGCCA
CGT
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