mRNA_Ecto-sp6_S_contig86.17736.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig86.17736.1
Unique NamemRNA_Ecto-sp6_S_contig86.17736.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig86.17736.1 vs. uniprot
Match: D7G1G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G6_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 3.450e-22
Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 3 
Query:  354 RS*DGLAKFRPHSGNN-ATPLVVAVIRFRPESRHCYLSPSPPHPPIRKPST 503
            RS +GLAKF PHSGNN ATPLVVAVIRFRPESRHCYLSPSPPHPPIRKPST
Sbjct:   10 RSQEGLAKFGPHSGNNNATPLVVAVIRFRPESRHCYLSPSPPHPPIRKPST 60
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig86.17736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1G6_ECTSI3.450e-2292.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig86contigEcto-sp6_S_contig86:289206..290236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1031
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_000940.1
Cds size729
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350485.5786796-UTR-Ecto-sp6_S_contig86:289205..2895061682350485.5786796-UTR-Ecto-sp6_S_contig86:289205..289506Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig86 289206..289506 +
1682350485.597259-UTR-Ecto-sp6_S_contig86:290235..2902361682350485.597259-UTR-Ecto-sp6_S_contig86:290235..290236Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig86 290236..290236 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350485.5882604-CDS-Ecto-sp6_S_contig86:289506..2902351682350485.5882604-CDS-Ecto-sp6_S_contig86:289506..290235Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 289507..290235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig86.17736.1prot_Ecto-sp6_S_contig86.17736.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig86 289507..290235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig86.17736.1

>prot_Ecto-sp6_S_contig86.17736.1 ID=prot_Ecto-sp6_S_contig86.17736.1|Name=mRNA_Ecto-sp6_S_contig86.17736.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=243bp
MAIYAARSSCTEQLHITAELRRSGEIQAAFGQQRDAPRSRRDTFSTRITT
LLLESVPSPSSHSKTLHIARLNILVGNCTWTQIRCGATSASSLFSPSPLQ
SYKMKAKICDLPLFKEISRPLDVRFCRCVLQQTPTQGRTYTGVREVHTCC
TDHTLRHSLRPQYDRTCDEVGVFSLHSSSKGEIPVWWVGFTCLCATTLHS
NVSFEQDCQQSQQINHRSWKCTTIVPPSTETTRGTDDEQASR*
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mRNA from alignment at Ecto-sp6_S_contig86:289206..290236+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig86.17736.1 ID=mRNA_Ecto-sp6_S_contig86.17736.1|Name=mRNA_Ecto-sp6_S_contig86.17736.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1031bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:289206..290236+ (Ectocarpus species6 EcLAC_371)
CAAAACAAAAAAGACGACAGAATTAGTTGCGATGCGGCGGGGGGGCTTCC
AGAAGTTATCTCCCCATCCGTCTCTTGACACGTGGTACATACAAGAAATT
GCCCACACACAACACACACACACACAAACCAATTTCCCTCCCAGAATGAT
CCTCCTCCCCAACGAGACGACGCGTGCTTCCGCTTCCCTTCCTTCCCGAA
AAATGACGACTCCCCCCAATCGTATTATTTCGCCGCACGTTTTCTCGCGG
TGACGTGGGCTGGACGAGTGAGTGTTTTTCTTTTCCTGACGACGACAATC
GATGGCGATTTACGCGGCCCGCTCATCATGTACAGAGCAGCTGCATATTA
CCGCGGAGCTAAGACGGTCTGGCGAAATTCAGGCCGCATTCGGGCAACAA
CGCGACGCCCCTCGTAGTCGCCGTGATACGTTTTCGACCAGAATCACGAC
ACTGTTACTTGAGTCCGTCCCCTCCCCATCCTCCCATTCGAAAACCCTCC
ACATAGCTAGACTAAATATCCTCGTTGGAAATTGCACGTGGACACAAATT
CGGTGCGGTGCCACGTCCGCCAGTTCTCTCTTCTCTCCCTCGCCGCTTCA
ATCATACAAAATGAAAGCGAAAATTTGCGACCTGCCACTATTTAAGGAAA
TTTCGAGACCACTCGACGTCAGGTTCTGTCGGTGTGTGCTACAACAGACA
CCTACACAAGGGCGTACGTACACGGGCGTTCGCGAAGTTCACACCTGCTG
CACGGATCATACGTTGAGGCATTCCCTCAGGCCACAATACGACCGAACAT
GCGACGAAGTTGGGGTATTCTCGCTGCATTCTTCGAGCAAGGGGGAGATA
CCCGTGTGGTGGGTGGGTTTTACCTGCCTGTGTGCTACGACACTGCACTC
AAACGTCTCCTTTGAGCAAGACTGCCAACAGTCACAACAGATAAATCATC
GATCGTGGAAGTGCACAACAATAGTACCCCCATCAACCGAAACAACAAGA
GGGACAGATGATGAGCAAGCGAGTCGATAAT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig86:289206..290236+

>mRNA_Ecto-sp6_S_contig86.17736.1 ID=mRNA_Ecto-sp6_S_contig86.17736.1|Name=mRNA_Ecto-sp6_S_contig86.17736.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=729bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:289206..290236+ (Ectocarpus species6 EcLAC_371)
ATGGCGATTTACGCGGCCCGCTCATCATGTACAGAGCAGCTGCATATTAC
CGCGGAGCTAAGACGGTCTGGCGAAATTCAGGCCGCATTCGGGCAACAAC
GCGACGCCCCTCGTAGTCGCCGTGATACGTTTTCGACCAGAATCACGACA
CTGTTACTTGAGTCCGTCCCCTCCCCATCCTCCCATTCGAAAACCCTCCA
CATAGCTAGACTAAATATCCTCGTTGGAAATTGCACGTGGACACAAATTC
GGTGCGGTGCCACGTCCGCCAGTTCTCTCTTCTCTCCCTCGCCGCTTCAA
TCATACAAAATGAAAGCGAAAATTTGCGACCTGCCACTATTTAAGGAAAT
TTCGAGACCACTCGACGTCAGGTTCTGTCGGTGTGTGCTACAACAGACAC
CTACACAAGGGCGTACGTACACGGGCGTTCGCGAAGTTCACACCTGCTGC
ACGGATCATACGTTGAGGCATTCCCTCAGGCCACAATACGACCGAACATG
CGACGAAGTTGGGGTATTCTCGCTGCATTCTTCGAGCAAGGGGGAGATAC
CCGTGTGGTGGGTGGGTTTTACCTGCCTGTGTGCTACGACACTGCACTCA
AACGTCTCCTTTGAGCAAGACTGCCAACAGTCACAACAGATAAATCATCG
ATCGTGGAAGTGCACAACAATAGTACCCCCATCAACCGAAACAACAAGAG
GGACAGATGATGAGCAAGCGAGTCGATAA
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