mRNA_Ecto-sp6_S_contig86.17727.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig86.17727.1
Unique NamemRNA_Ecto-sp6_S_contig86.17727.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig86.17727.1 vs. uniprot
Match: D7G1H9_ECTSI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1H9_ECTSI)

HSP 1 Score: 610 bits (1573), Expect = 3.010e-215
Identity = 344/350 (98.29%), Postives = 346/350 (98.86%), Query Frame = 1
Query:    1 MGVDVFDLPAGGIPASERGQQEALPPQVLESIRGRHGLQEFAGGRRLLDPEYYGADGEAGDAALTGSXXXXXXXXXXXXXXXXXXXXX-GDGTAAKSRLLFPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXGSGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLASRGGQRIATLLVYLTEMPEGDGGATAFRDLGPLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVVRPGAEQDKWIAQLWLRESRYTPTVPKQNSHEHAASVVAEFDKIWRG 1047
            MGVDVFDLPAGGIPASERGQQEALPPQVLE IRGRHGLQEFAGGRRLLDPEYYGADGEAGDAAL GSXXXXXXXXXXXXXXXXXXXXX GDGTAAKSRLLFPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXGSGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLASRGGQRIATLLVYLTEMPEGDGGATAFRDLGPLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVVRPGAEQDKWIAQLWLRESRYTPTVPKQN HEHAA+VVAEFDKIW+G
Sbjct:    1 MGVDVFDLPAGGIPASERGQQEALPPQVLECIRGRHGLQEFAGGRRLLDPEYYGADGEAGDAALMGSXXXXXXXXXXXXXXXXXXXXXXGDGTAAKSRLLFPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXGSGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLASRGGQRIATLLVYLTEMPEGDGGATAFRDLGPLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVVRPGAEQDKWIAQLWLRESRYTPTVPKQNRHEHAAAVVAEFDKIWQG 350          
BLAST of mRNA_Ecto-sp6_S_contig86.17727.1 vs. uniprot
Match: A0A6H5L0Y5_9PHAE (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y5_9PHAE)

HSP 1 Score: 596 bits (1536), Expect = 4.140e-206
Identity = 339/354 (95.76%), Postives = 343/354 (96.89%), Query Frame = 1
Query:    1 MGVDVFDLPAGGIPASERGQQEALPPQVLESIRGRHGLQEFAGGRRLLDPEYYGADGEAGDAALTGSXXXXXXXXXXXXXXXXXXXXXG-DGTAAKSRLLFPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXGS----GPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLASRGGQRIATLLVYLTEMPEGDGGATAFRDLGPLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVVRPGAEQDKWIAQLWLRESRYTPTVPKQNSHEHAASVVAEFDKIWRG 1047
            MGVDVFDLPAGGIPASERGQQEALPPQVLE IRGRHGL+EFAGGRRLLDPEY+GADGEAGDAALTGSXXXXXXXXXXXXXXXXXXXXXG DGTAAKSRLLFPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXX      GPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLAS+GGQRIATLLVYLTEMPEGDGGATAFRDLGPLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVVRPGAEQDKWIAQLWLRE RYTPTVPKQN HEHAAS VAEFDKIW+G
Sbjct:  223 MGVDVFDLPAGGIPASERGQQEALPPQVLECIRGRHGLEEFAGGRRLLDPEYFGADGEAGDAALTGSXXXXXXXXXXXXXXXXXXXXXGGDGTAAKSRLLFPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXXXXXXXGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLASKGGQRIATLLVYLTEMPEGDGGATAFRDLGPLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVVRPGAEQDKWIAQLWLRERRYTPTVPKQNRHEHAASAVAEFDKIWQG 576          
BLAST of mRNA_Ecto-sp6_S_contig86.17727.1 vs. uniprot
Match: A0A7S2UAB3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAB3_9STRA)

HSP 1 Score: 265 bits (676), Expect = 2.420e-78
Identity = 138/249 (55.42%), Postives = 165/249 (66.27%), Query Frame = 1
Query:  298 FPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXGSGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLASRGGQRIATLLVYLTEMPEGDGGATAFRDLG-----PLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVVRPGAEQDKWIAQLWLRESRYTPTVPKQNSHEHAASVVAEF 1029
            F   R+LH +P V+ V DFFT EECD  I+RS +                    G      +S T+G D  A AQRTSTTWFH ++ VPELMAKA  L+G+  +   +EE QTVRYR  E FTWHLDAL P P+LA +GGQR ATLLVYLT++ E DGGAT FRDLG     PL+VRP+KGSALLFFP+ GG P  P D+RTLH GE V   AEQDKWIAQLWLRE+ YTPT P  NSH  A+S ++++
Sbjct:  235 FSKFRVLHVDPMVLCVDDFFTPEECDALIARSTTTVITADNNEKEGTTLLPMKIG------QSKTVGKDSRARAQRTSTTWFHHYAGVPELMAKACRLMGIN-DISAFEEPQTVRYRRTEHFTWHLDALAPTPELADKGGQRCATLLVYLTDLSEKDGGATMFRDLGGSDGEPLKVRPKKGSALLFFPAAGGIPSVPLDLRTLHCGEAVASDAEQDKWIAQLWLRETPYTPTAPPGNSHASASSPISDY 476          
BLAST of mRNA_Ecto-sp6_S_contig86.17727.1 vs. uniprot
Match: A0A7S1ZRX7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZRX7_9STRA)

HSP 1 Score: 257 bits (657), Expect = 2.490e-78
Identity = 127/249 (51.00%), Postives = 167/249 (67.07%), Query Frame = 1
Query:  298 FPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXGSGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLASRGGQRIATLLVYLTEMPEGDGGATAFRDLG-----PLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVVRPGAEQDKWIAQLWLRESRYTPTVPKQNSHEHAASVVAEF 1029
            F   R+LH +P V+ V DF T +ECD  ++ + +P                        + +S T+G D+ + +QRTSTTWFH +  +P+LMAKAS L+G+   + RWEE QTVRYR  EKFTWHLDAL P+ +LA  GGQR+ATL+VYL ++PEG GG+T FRDLG     PL+V P+KGSAL+FFP+ GG P+ PFDIRTLHAGE V   +E DKWIAQLWLRE++YTPT P  N+H  A   ++++
Sbjct:   26 FEKFRVLHVDPMVLCVDDFLTSDECDTLVALTDNPKYDKNANTAPMK------------IGQSKTVGKDMYSKSQRTSTTWFHHYRGLPQLMAKASRLLGLDNID-RWEEPQTVRYRRSEKFTWHLDALGPSDELAKSGGQRVATLIVYLADLPEGSGGSTMFRDLGGESGEPLKVHPKKGSALVFFPAAGGIPNVPFDIRTLHAGEAVSDESEDDKWIAQLWLRETKYTPTAPPGNTHAAATDAISKY 261          
BLAST of mRNA_Ecto-sp6_S_contig86.17727.1 vs. uniprot
Match: A0A7S2N1B0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N1B0_9STRA)

HSP 1 Score: 257 bits (656), Expect = 8.400e-78
Identity = 131/248 (52.82%), Postives = 163/248 (65.73%), Query Frame = 1
Query:  298 FPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXGSGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLASRGGQRIATLLVYLTEMPEGDGGATAFRDLG-----PLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVVRPGAEQDKWIAQLWLRESRYTPTVPKQNSHEHAASVVAE 1026
            F   R+LH +P ++ + DF T  ECD YIS + +P                        + +S T+G D+ + +QRTSTTWFH +  +  LMAKAS L+G+   E RWEE QTVRYR  EKFTWHLDAL P+ +L   GGQR+ATLLVYL ++P+G GG+T FRDLG     PL+V+P+KGSALLFFP+ GG P+ PFDIRTLHAGE V   ++ DKWIAQLWLRE  YTPT P  NSHE A   V+E
Sbjct:   57 FTKFRILHTDPMLLSIDDFLTPTECDTYISLTSNPKYDKNANTAPM------------EIGQSKTVGKDMYSKSQRTSTTWFHHYRGMAGLMAKASRLLGLKGIE-RWEEPQTVRYRRSEKFTWHLDALAPSEELTKAGGQRVATLLVYLADLPDGCGGSTMFRDLGGESGEPLKVQPKKGSALLFFPAAGGIPNVPFDIRTLHAGEAVSDESDDDKWIAQLWLREHVYTPTAPPGNSHEAAVEAVSE 291          
BLAST of mRNA_Ecto-sp6_S_contig86.17727.1 vs. uniprot
Match: A0A7S4QXQ4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QXQ4_9STRA)

HSP 1 Score: 257 bits (657), Expect = 5.250e-77
Identity = 127/249 (51.00%), Postives = 167/249 (67.07%), Query Frame = 1
Query:  298 FPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXGSGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLASRGGQRIATLLVYLTEMPEGDGGATAFRDLG-----PLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVVRPGAEQDKWIAQLWLRESRYTPTVPKQNSHEHAASVVAEF 1029
            F   R+LH +P V+ V DF T +ECD  ++ + +P                        + +S T+G D+ + +QRTSTTWFH +  +P+LMAKAS L+G+   + RWEE QTVRYR  EKFTWHLDAL P+ +LA  GGQR+ATL+VYL ++PEG GG+T FRDLG     PL+V P+KGSAL+FFP+ GG P+ PFDIRTLHAGE V   +E DKWIAQLWLRE++YTPT P  N+H  A   ++++
Sbjct:  123 FEKFRVLHVDPMVLCVDDFLTSDECDTLVALTDNPKYDKNANTAPMK------------IGQSKTVGKDMYSKSQRTSTTWFHHYRGLPQLMAKASRLLGLDNID-RWEEPQTVRYRRSEKFTWHLDALGPSDELAKSGGQRVATLIVYLADLPEGSGGSTMFRDLGGESGEPLKVHPKKGSALVFFPAAGGIPNVPFDIRTLHAGEAVSDESEDDKWIAQLWLRETKYTPTAPPGNTHAAATDAISKY 358          
BLAST of mRNA_Ecto-sp6_S_contig86.17727.1 vs. uniprot
Match: A0A7S2KCF3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KCF3_9STRA)

HSP 1 Score: 259 bits (661), Expect = 1.260e-76
Identity = 136/249 (54.62%), Postives = 165/249 (66.27%), Query Frame = 1
Query:  298 FPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXGSGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLASRGGQRIATLLVYLTEMPEGDGGATAFRDLGP-----LRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVVRPGAEQDKWIAQLWLRESRYTPTVPKQNSHEHAASVVAEF 1029
            F   R+LH +P VI V DFFT EECD+YI+  +S P                       M RS T+G D  A +QRTSTTWFH +  VPELMAK+S L G+  + G +EE QTVRY+P +KFTWHLDAL P  +  S+GGQR ATLLVYLT++   DGGAT FRDLGP     L+V+P+KGSALLFFP+ GG P+ PFDIRTLHAGEVV    + DKWIAQLWLRE  Y PTVP +N H  A   ++++
Sbjct:  202 FDKFRVLHIDPLVIAVDDFFTHEECDKYIA--MSDPTAGNKDGDAV-------------MTRSMTVGKDAAAKSQRTSTTWFHHYKNVPELMAKSSRLFGLD-DIGVFEEPQTVRYQPDQKFTWHLDALAPGSENISKGGQRTATLLVYLTDLGPEDGGATTFRDLGPAEGEPLKVQPKKGSALLFFPAAGGIPNTPFDIRTLHAGEVVSADCKSDKWIAQLWLREDSYEPTVPPENVHAAATEPISQY 434          
BLAST of mRNA_Ecto-sp6_S_contig86.17727.1 vs. uniprot
Match: K0SVE6_THAOC (Fe2OG dioxygenase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SVE6_THAOC)

HSP 1 Score: 255 bits (651), Expect = 9.720e-75
Identity = 134/252 (53.17%), Postives = 164/252 (65.08%), Query Frame = 1
Query:  298 FPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXGSGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLA---SRGGQRIATLLVYLTEMPEGDGGATAFRDLG---PLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVVRPGAEQDKWIAQLWLRESRYTPTVPKQNSHEHAASVVAEFDK 1035
            F   R+LH +P VI V DFFT EECD+Y+  S+                          + +S T+G D  + AQRTSTTWFH ++ VPELMA+A+ L+G+P    R+EE QTVRYR  EKFTWHLDAL  +PD+A   S  GQR++TLLVYLT++   +GGAT FRDLG   PL+VRP+KGSALLFFPS GG PDCPFDIRTLH GE V   A  +KWIAQLWLR+  YTPT P  + H  A   + E+ K
Sbjct:  229 FEQFRVLHVDPMVIAVDDFFTSEECDKYVQMSIDAENNQDQEAGALQPLL---------LGQSQTVGKDSRSKAQRTSTTWFHHYAGVPELMARAARLLGLP-GISRFEEPQTVRYRRSEKFTWHLDAL--SPDVANDSSSAGQRVSTLLVYLTDLKSEEGGATMFRDLGGDGPLKVRPKKGSALLFFPSAGGIPDCPFDIRTLHCGEAVGEDAPNEKWIAQLWLRQRDYTPTAPAGSEHRKATVAIQEYCK 468          
BLAST of mRNA_Ecto-sp6_S_contig86.17727.1 vs. uniprot
Match: A0A7S2KB24_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KB24_9STRA)

HSP 1 Score: 250 bits (639), Expect = 4.180e-73
Identity = 136/257 (52.92%), Postives = 162/257 (63.04%), Query Frame = 1
Query:  298 FPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXGSGPHMQ-RSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEG--RWEEAQTVRYRPGEKFTWHLDALPPAP-DLASRGGQRIATLLVYLTEMPEGDGGATAFRDLG---------PLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVVRPGAEQDKWIAQLWLRESRYTPTVPKQNSHEHAASVVAEF 1029
            F   R+LH +P V+ + DFFT+EECD+Y+  S+                        P +  +S T+G D  + AQRTSTTWFH +  VPELMAKAS L+G+   EG  R+EE QTVRYR  EKFTWHLDAL P   +  S  GQRIATLLVYLT++P G GGAT FRDLG         PL+VRP+KGSALLFFPS GG P  PFDIRTLH GE V   AE +KWIAQLWLR+  Y PT P  NSH  A+  +  +
Sbjct:  204 FEKFRVLHTDPMVLAIDDFFTNEECDKYVQISIDAEKQQTNSAAAGDETTQEETALQPMLLGQSQTVGKDSRSKAQRTSTTWFHYYKGVPELMAKASRLLGL---EGIDRFEEPQTVRYRRNEKFTWHLDALSPEEANNPSGSGQRIATLLVYLTDVPAGSGGATMFRDLGGNNGAEDSQPLKVRPKKGSALLFFPSAGGIPGAPFDIRTLHCGEAVAEDAENEKWIAQLWLRQRGYEPTAPVGNSHGDASDEIGRY 457          
BLAST of mRNA_Ecto-sp6_S_contig86.17727.1 vs. uniprot
Match: A0A7S3Q2Q4_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q2Q4_9STRA)

HSP 1 Score: 249 bits (637), Expect = 2.210e-72
Identity = 129/252 (51.19%), Postives = 159/252 (63.10%), Query Frame = 1
Query:  298 FPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXGSGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLASRGGQRIATLLVYLTEMPEGDGGATAFRDLGP-------LRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVVRPGAEQDKWIAQLWLRESR-YTPTVPKQNSHEHAASVVAEF 1029
            F   R+L+ +P V+ + DF ++EECDEY++   +P                      P   RS T+G D  + +QRTSTTWFH F  VP LMAKAS L+G+   + RWEE QTVRY+  EKFTWHLDAL P       GGQR+ATLLVYL ++ E +GGAT FRDLG        LRV+P+KGSALLFFP+ GG P+ PFDIRTLHAGE +   AE DKWIAQ WLRE+  YTP+ P  N+H  A   + EF
Sbjct:  257 FTQFRILNVDPMVLAIDDFMSEEECDEYVNLCANPKILTESN-------------DAPMESRSKTMGKDSKSKSQRTSTTWFHHFKGVPALMAKASRLLGLKSID-RWEEPQTVRYQQTEKFTWHLDALAPGDSEPEIGGQRVATLLVYLNDIGENNGGATCFRDLGDNFDDGDYLRVQPKKGSALLFFPAAGGIPNTPFDIRTLHAGEALSASAESDKWIAQCWLRENNNYTPSAPSGNTHVAATKAIGEF 494          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig86.17727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1H9_ECTSI3.010e-21598.29Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A6H5L0Y5_9PHAE4.140e-20695.76Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S2UAB3_9STRA2.420e-7855.42Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1ZRX7_9STRA2.490e-7851.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2N1B0_9STRA8.400e-7852.82Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S4QXQ4_9STRA5.250e-7751.00Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2KCF3_9STRA1.260e-7654.62Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
K0SVE6_THAOC9.720e-7553.17Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S2KB24_9STRA4.180e-7352.92Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S3Q2Q4_9STRA2.210e-7251.19Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig86contigEcto-sp6_S_contig86:175249..179044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score612.8
Seed ortholog evalue9.7e-173
Seed eggNOG ortholog2880.D7G1H9
Model size1760
KEGG rclassRC00478
KEGG koko:K00472
KEGG ReactionR01252
KEGG Pathwayko00330,ko01100,map00330,map01100
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGsKOG1591@1,KOG1591@2759
Ec32 ortholog descriptionOxoglutarate/iron-dependent dioxygenase
Ec32 orthologEc-07_001070.1
EC1.14.11.2
Cds size1050
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig86.17727.1prot_Ecto-sp6_S_contig86.17727.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig86 175249..178334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350487.7664337-CDS-Ecto-sp6_S_contig86:175248..1757701682350487.7664337-CDS-Ecto-sp6_S_contig86:175248..175770Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 175249..175770 +
1682350487.7765555-CDS-Ecto-sp6_S_contig86:176314..1764281682350487.7765555-CDS-Ecto-sp6_S_contig86:176314..176428Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 176315..176428 +
1682350487.7844827-CDS-Ecto-sp6_S_contig86:176993..1771791682350487.7844827-CDS-Ecto-sp6_S_contig86:176993..177179Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 176994..177179 +
1682350487.7920184-CDS-Ecto-sp6_S_contig86:177754..1778351682350487.7920184-CDS-Ecto-sp6_S_contig86:177754..177835Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 177755..177835 +
1682350487.7997346-CDS-Ecto-sp6_S_contig86:178187..1783341682350487.7997346-CDS-Ecto-sp6_S_contig86:178187..178334Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 178188..178334 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350487.8078184-UTR-Ecto-sp6_S_contig86:178334..1790441682350487.8078184-UTR-Ecto-sp6_S_contig86:178334..179044Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig86 178335..179044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig86.17727.1

>prot_Ecto-sp6_S_contig86.17727.1 ID=prot_Ecto-sp6_S_contig86.17727.1|Name=mRNA_Ecto-sp6_S_contig86.17727.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=350bp
MGVDVFDLPAGGIPASERGQQEALPPQVLESIRGRHGLQEFAGGRRLLDP
EYYGADGEAGDAALTGSSSSSGGPAAAAAAGGGEKKEGGDGTAAKSRLLF
PGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPPPAAVTSGAGAGAAA
AATGSGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGV
PFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLASRGGQRIATLLVYLT
EMPEGDGGATAFRDLGPLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAG
EVVRPGAEQDKWIAQLWLRESRYTPTVPKQNSHEHAASVVAEFDKIWRG*
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mRNA from alignment at Ecto-sp6_S_contig86:175249..179044+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig86.17727.1 ID=mRNA_Ecto-sp6_S_contig86.17727.1|Name=mRNA_Ecto-sp6_S_contig86.17727.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3796bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:175249..179044+ (Ectocarpus species6 EcLAC_371)
ATGGGGGTCGACGTCTTCGACCTGCCCGCCGGCGGCATCCCGGCCAGCGA GCGGGGCCAGCAGGAAGCCTTGCCGCCGCAGGTCCTCGAGAGCATCCGAG GGCGGCACGGCCTCCAGGAGTTCGCGGGCGGCCGGCGGCTCCTCGACCCC GAGTACTACGGCGCGGACGGCGAAGCCGGTGATGCGGCTCTGACGGGGTC CTCCTCTTCTTCAGGGGGACCGGCGGCGGCGGCGGCGGCGGGCGGCGGGG AGAAGAAGGAAGGCGGCGACGGCACCGCCGCAAAAAGCCGGCTGCTGTTC CCAGGCCTCCGCCTCCTGCATGCCGAGCCGCCCGTCATCGGCGTCAGCGA CTTCTTCACCGACGAGGAGTGCGACGAATACATCTCCAGGTCCGTTTCGC CGCCGCCGCCGGCTGCCGTAACGTCGGGGGCGGGGGCGGGGGCTGCTGCG GCGGCGACGGGGAGCGGGCCGCACATGCAGCGGAGCGCCACGCTGGGTGC CGATGTGGACGCCGTGGCTCAGGTAAGGACGAGCCAACCTTTCCTGGCTG TGAGAGAGGCTTGGAACGGTATATAACGTGAGGTTTTCGTGCGCTGGATA ATATTTCGCTTAGCATGAGACGCGAGGTGTGTATCCTACATATGCAAACG TAATCATGGATTACAGCTGCGTTGAGAAAATCCTTAGCCACGTTTGCAAT AGACCGTCTCTTGCCGCAGCCAGCCGGATATCGCTCTTAGGCTGATGCGG GTACCGTTCGCATTGCACCGCTCAGTTGCTCATGTACGGCTGAGGGCACC AAATTTGTGTTCTTCACGGTACTGTAACATCAAGGTTCTTGTTGGCAGCA TCGCCTATGCTACGAGGGCGGTATGTCACCTTGTGTCAGACTGTGCATGC ACGACGGTCCAACACCTTGCAGAAGTAGGTTGTGAGCGAATACACCCCGC ACCCCCACCCCTTCAATCTGCCCCGGCTTTGTAGGGATGCGAGGTCAATG GTCTAGCGACTACGACATGAGTACCCCTGCCCCCCCCCCCCTCCAATCTA TCGCGTTCGCCAACAGCGAACGTCCACCACTTGGTTCCACCGGTTTTCGG CGGTACCGGAGCTGATGGCGAAGGCCTCCGCTCTGGTGGGAGTTCCATTC GAGGAGGGGCGATGGGAAGAGGCGCAGACGGTAAGGATGGCGGCTTGCTC TCATGAAAGGTTGAGTTTTCGTTTTGACTCCAATGGCACGCGGTCACGAT GCTGCCGTCACGTGCTCTTTCGGAACGTGGCTCGAAACCCCTCTTCAAGA TGGAGTGAAACTGCCAGTGTGGATGATGTGGTCCTTGATGTATACGCCGA ACCGAGTGGGCGGGTGACCCATCGGTTTTACGGACGGTCAAATACGGGAC GGTATACGGTTGACATCACGATCAGGACAAGCGGAAAAGGGCCGGTTTTC TTTTCGCCGTTCCGTGTTTTCTTCAGGTTCTTTCGGCGAGGTTTGTGGTC CGTTTGGAACGGGCTACGTACGTCCATTCAGGTCGGCAGGGATAAAATGT TTGGTGGGTCACCAGGTCAGGGTCTGTCCGTCACCTATCTATGCTGCCGA ACCAAACCTCGCGGATTCGTGCGGTCTCTGAAGCACGGGTTCAGCCGGGT CGAACGGACCTGACCCGTCTTGACCTGACACGGTTTTAACCCGTACAGAA CGTTCCGTGGAACGCCCTCGGTAACAACAACCCGCCTCCCTCAAGGTGCG GTATCGCCCGGGGGAGAAGTTCACCTGGCACTTGGACGCGCTGCCACCGG CCCCCGACCTGGCCTCCAGGGGGGGGCAGAGGATCGCCACCCTGCTGGTG TACCTCACGGAGATGCCCGAGGGGGACGGCGGGGCGACGGCGTTTCGAGA CTTGGGGCCTCTTCGTGTTCGTCCCCGTAAGGTTGGTCGGCGTGTGCGGT GGTGGTGGTGGTGGTGGTGGTGTGTTTGGGTGGTGGCATCGATCTTAGGA GTGTCTCGGTTTGTGGTACCAGGTGATATGACGGGGCCGCTCGATGCTCC GCATGGCGTGCTCACTCTCGCCTTTCGAAACCTGACGGAGGTGAGAGTGC ACCCGCGCCCTCCACTTCTGTGTCTATGTTAAGGGCCGGTTCCCTTTTAT TAGACCCGGCACCTTGCCAAGAGTGTATCGTGGCATGGCTTTGTAAGTGC GACGTGTCTTGTCTGCGTGTGTGCTGCGTAGTGCAAATTATGAAACCAGC GAGCCAGGCGACCAATCAGTGGGAACGCTTCCAAGTATCACGCCTGCGGG GTGAAGGGCCTCGTTTATATAGATATTCAGCAACACCCTCATTGGTCAAA CTAACTCCCCAAGAGTCGCTCTGTCCCCCGACGCCGATGTTTTTGACCAA ACCATCACTCCCTCCGATCAACGCTCTCCTTTGCGTTCCCGTCTACGTCG ACCTGACCGACCCAAAACCGTCCTCACGTGGCTGGCTTCCTGCTCCACCC CTTCAGGGGTCCGCTCTGCTGTTCTTCCCGTCCTTGGGGGGTGCCCCGGA CTGCCCTTTCGACATCCGAACGCTACACGCTGGGGAGGTAAGGGGTAACT TGATATAGCGTATGCAACCCCGCTTACAGTTTATGTTGAGGTTGGGTGTA CGACCCTGTGTATGCACAATGTATGTGGTGGTTGCGTCCAGACCAGGAAG GAGGTGCACAGCGGTTGCTGGAGCAGCCAATGAAAGTGCGGCAGACCCCG CTGCTCTCCCGTTTTCGAGTTGGTAGGAGTCGCGGATTTTCACGGAGGAA TCACGAATCTTCAAAAGGTAGAATGTGGAGTTGAAGACGCAGTGCGTATA GCTCTGGTCCAACAACGGTGAGGGGTAAGCTGTGAGCCTCGCTCACGCCA TCAATGACAGCATGTTTTCCCTTCGAACGTGCTCGGCAGGTGGTGAGACC GGGGGCGGAGCAGGACAAGTGGATCGCGCAGCTGTGGCTCCGAGAGAGCC GTTACACCCCAACGGTCCCCAAGCAAAACAGCCACGAACACGCTGCTTCG GTGGTGGCAGAGTTCGACAAGATTTGGCGGGGCTAGTGTAGCCTGCTTAG CGGCCCTGTCAGTACTAGTGTGTTGCTGCTTGTACCGTGCTTGCGTGGTT GAGTCGATCGACTGGGTGGCGAAGGATTTCGGCCGTTTCGGGAGGAGTTG TATTCGTACGTCGACAGGGGTATGTATCGAGGGGAAACGTACGCGCCTAT TTCGAATGACGAAGCTCATTCGGTGGTCGCGGAGTGCTACAAGGCTTGGT GGCGTTACGCTGTTAGCATCCCTGTCAAGAACTAGTAGATCGCGGTTGGC CCGTGCTGGAGTCAAACCTTCGGGTGTCAACGGATTTGGCGTTAATTTTC TTTCACGTTCATTTTCAAATGGTGTTTGTTTTTGAAAGTAGTTGTATGCA TGTGTCCACAGAAGTGTGTCGAAGGGGAACGGACGCGCCTACTCAACTTC GATCATTCAGTTGGTCTCGCTGTACAACTTGCGCGAGCAGTAGGGGAGCA CTGCAGTGAACAGCCTATTCGACGTATTTTTTTTTTTTTTTTGCAAACTA CAACTCAGTAAGTTCTGAATGGCCCGCGGGGTGAACCAGTTTGTCTAGAC TTGGCGGACAGGATCCTAGTTTCGGAGCTCGTTTTAGATTTGTTTCGGAA TACGGAGGCGTTAGTATTGTTTGACGGAATGTATTTAGGTTTATTGCGCA CGGCTTATTAGTGATTCCCCAAAGAAAGGTGGAGGTTGCCTTCGGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig86:175249..179044+

>mRNA_Ecto-sp6_S_contig86.17727.1 ID=mRNA_Ecto-sp6_S_contig86.17727.1|Name=mRNA_Ecto-sp6_S_contig86.17727.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1050bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:175249..179044+ (Ectocarpus species6 EcLAC_371)
ATGGGGGTCGACGTCTTCGACCTGCCCGCCGGCGGCATCCCGGCCAGCGA
GCGGGGCCAGCAGGAAGCCTTGCCGCCGCAGGTCCTCGAGAGCATCCGAG
GGCGGCACGGCCTCCAGGAGTTCGCGGGCGGCCGGCGGCTCCTCGACCCC
GAGTACTACGGCGCGGACGGCGAAGCCGGTGATGCGGCTCTGACGGGGTC
CTCCTCTTCTTCAGGGGGACCGGCGGCGGCGGCGGCGGCGGGCGGCGGGG
AGAAGAAGGAAGGCGGCGACGGCACCGCCGCAAAAAGCCGGCTGCTGTTC
CCAGGCCTCCGCCTCCTGCATGCCGAGCCGCCCGTCATCGGCGTCAGCGA
CTTCTTCACCGACGAGGAGTGCGACGAATACATCTCCAGGTCCGTTTCGC
CGCCGCCGCCGGCTGCCGTAACGTCGGGGGCGGGGGCGGGGGCTGCTGCG
GCGGCGACGGGGAGCGGGCCGCACATGCAGCGGAGCGCCACGCTGGGTGC
CGATGTGGACGCCGTGGCTCAGCGAACGTCCACCACTTGGTTCCACCGGT
TTTCGGCGGTACCGGAGCTGATGGCGAAGGCCTCCGCTCTGGTGGGAGTT
CCATTCGAGGAGGGGCGATGGGAAGAGGCGCAGACGGTGCGGTATCGCCC
GGGGGAGAAGTTCACCTGGCACTTGGACGCGCTGCCACCGGCCCCCGACC
TGGCCTCCAGGGGGGGGCAGAGGATCGCCACCCTGCTGGTGTACCTCACG
GAGATGCCCGAGGGGGACGGCGGGGCGACGGCGTTTCGAGACTTGGGGCC
TCTTCGTGTTCGTCCCCGTAAGGGGTCCGCTCTGCTGTTCTTCCCGTCCT
TGGGGGGTGCCCCGGACTGCCCTTTCGACATCCGAACGCTACACGCTGGG
GAGGTGGTGAGACCGGGGGCGGAGCAGGACAAGTGGATCGCGCAGCTGTG
GCTCCGAGAGAGCCGTTACACCCCAACGGTCCCCAAGCAAAACAGCCACG
AACACGCTGCTTCGGTGGTGGCAGAGTTCGACAAGATTTGGCGGGGCTAG
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