mRNA_Ecto-sp6_S_contig86.17725.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig86.17725.1 vs. uniprot
Match: D7G1I1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G1I1_ECTSI) HSP 1 Score: 530 bits (1364), Expect = 8.410e-189 Identity = 260/268 (97.01%), Postives = 263/268 (98.13%), Query Frame = 1
Query: 214 MTSVCKSDLSGLPTFNVAGGRPDERFGTRGSFSPGVRIMSGGHTRDVPREAEVDHGKVLFVSAVHKPDLSAEARTNAVRPTERLGTRGRFTPGERRWVGGKPRDVPLEAEVDHGKVLFVSAVHKPDLSAEARTNAIRPTERLGSRGRFTAGVRGWAGGKPRDVPLPRMRDPGTVLFESASERSRPSMSFSGETNVSGGREDERRGKLGSFEHGVVEARGGPLQVQAAFASEVELLWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY 1017
MTSVCKSDLSGLPTFNVAGGRPDERFGTRGSF+ GVRIMSGGHTRDVPREAEVDHGKVLFVSAVHKPDLSAEARTNAVRPTERLGTRGRFTPG RRWVGGKPRDVPLEAEVDHGKVLFVSAVHKPDLSAEARTNAIRP ERLGSRGRFTAGVRGW GGKPRDVPLPR+RDPGTVLFESASERSRPSMSFSGETNVSGGREDER G+LGSFEHGVVEARGGPLQVQAAFASEVELLWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY
Sbjct: 1 MTSVCKSDLSGLPTFNVAGGRPDERFGTRGSFTRGVRIMSGGHTRDVPREAEVDHGKVLFVSAVHKPDLSAEARTNAVRPTERLGTRGRFTPGGRRWVGGKPRDVPLEAEVDHGKVLFVSAVHKPDLSAEARTNAIRPKERLGSRGRFTAGVRGWVGGKPRDVPLPRLRDPGTVLFESASERSRPSMSFSGETNVSGGREDERHGRLGSFEHGVVEARGGPLQVQAAFASEVELLWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY 268
BLAST of mRNA_Ecto-sp6_S_contig86.17725.1 vs. uniprot
Match: D7FZE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE3_ECTSI) HSP 1 Score: 508 bits (1308), Expect = 7.630e-176 Identity = 253/285 (88.77%), Postives = 262/285 (91.93%), Query Frame = 1
Query: 169 SQSFAPIRTINNNN--AMTSVCKSDLSGLPTFNVAGGRPDERFGTRGSFSPGVRIMSGGHTRDVPREAEVDHGKVLFVSAVHKPDLSAEARTNAVRPTERLGTRGRFTPGERRWVGGKPRDVPLEAEVDHGKVLFVSAVHKPDLSAEARTNAIRPTERLGSRGRFTAGVRGWAGGKPRDVPLPRMRDPGTVLFESASERSRPSMSFSGETNVSGGREDERRGKLGSFEHGVVEARGGPLQVQAAFASEVELLWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY 1017
++ F I TINN+N AMTSV K DLSGLPTFNVAGGRPDERFGTRGSF+ GVRIMSGGH RDVP EAEVDHGKVLFVSA+HKPDLS EARTNAVRP ERLG RGRFTPG RRW GGKPRDVPLEAEVDHGKVL VSAVHKPDLSAEAR NA RPTERLGSRGRFTAGVR W GG+PRDVPLPR+RDPGTVLFESASERSRPS+SFSGETNVSGGREDER G+LGSFEHGVVEARGGPLQVQAAFASEVE LWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY
Sbjct: 273 TRGFVAITTINNDNSSAMTSVHKPDLSGLPTFNVAGGRPDERFGTRGSFTRGVRIMSGGHARDVPLEAEVDHGKVLFVSAIHKPDLSTEARTNAVRPMERLGARGRFTPGGRRWAGGKPRDVPLEAEVDHGKVLLVSAVHKPDLSAEARINATRPTERLGSRGRFTAGVRRWGGGEPRDVPLPRVRDPGTVLFESASERSRPSLSFSGETNVSGGREDERHGRLGSFEHGVVEARGGPLQVQAAFASEVEQLWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY 557
BLAST of mRNA_Ecto-sp6_S_contig86.17725.1 vs. uniprot
Match: A0A6H5KBU2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU2_9PHAE) HSP 1 Score: 360 bits (924), Expect = 9.710e-123 Identity = 190/268 (70.90%), Postives = 198/268 (73.88%), Query Frame = 1
Query: 214 MTSVCKSDLSGLPTFNVAGGRPDERFGTRGSFSPGVRIMSGGHTRDVPREAEVDHGKVLFVSAVHKPDLSAEARTNAVRPTERLGTRGRFTPGERRWVGGKPRDVPLEAEVDHGKVLFVSAVHKPDLSAEARTNAIRPTERLGSRGRFTAGVRGWAGGKPRDVPLPRMRDPGTVLFESASERSRPSMSFSGETNVSGGREDERRGKLGSFEHGVVEARGGPLQVQAAFASEVELLWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY 1017
MTSV K DLSGLP FNVAGGRPDERFGTRGSF+ GV IMSGGH RDVP LEAEVDHGKVLFVSAVHKPDLSAEARTNA+RPTERLGSRGRFTAGVR WAGG+PRDVPLPR+ DPGTVLFESASERSRPS+SFS ETNVSGGR+DER G+LGSFEHGVVEARGGPLQVQAAFA +VE LWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY
Sbjct: 1 MTSVHKPDLSGLPAFNVAGGRPDERFGTRGSFTRGVHIMSGGHARDVP----------------------------------------------------------LEAEVDHGKVLFVSAVHKPDLSAEARTNAVRPTERLGSRGRFTAGVRRWAGGEPRDVPLPRVCDPGTVLFESASERSRPSLSFSRETNVSGGRQDERHGRLGSFEHGVVEARGGPLQVQAAFARDVEQLWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY 210
BLAST of mRNA_Ecto-sp6_S_contig86.17725.1 vs. uniprot
Match: A0A6H5KAW1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW1_9PHAE) HSP 1 Score: 355 bits (911), Expect = 8.570e-121 Identity = 178/202 (88.12%), Postives = 185/202 (91.58%), Query Frame = 1
Query: 178 FAPIRTINNNN--AMTSVCKSDLSGLPTFNVAGGRPDERFGTRGSFSPGVRIMSGGHTRDVPREAEVDHGKVLFVSAVHKPDLSAEARTNAVRPTERLGTRGRFTPGERRWVGGKPRDVPLEAEVDHGKVLFVSAVHKPDLSAEARTNAIRPTERLGSRGRFTAGVRGWAGGKPRDVPLPRMRDPGTVLFESASERSRPSMS 777
F PI TINN+N AMTSV K DLSGLP FNVAGGRPDERFGTRGSF+ GV IMSGGH RDVP EAEVDHGKVLFVSA+HKPDLSAEARTNAVRP ERLG RGRFTPG RRW GGKPRDVPLEAEVDHGKVLFVSAVHKPDLSAEARTNA+RPTERLGSRGRFTAGVR WAGG+PRDVPLPR+ DPGTVLFESASERSRPS+S
Sbjct: 5 FVPITTINNDNIRAMTSVHKPDLSGLPAFNVAGGRPDERFGTRGSFTRGVHIMSGGHARDVPLEAEVDHGKVLFVSAIHKPDLSAEARTNAVRPMERLGARGRFTPGGRRWAGGKPRDVPLEAEVDHGKVLFVSAVHKPDLSAEARTNAVRPTERLGSRGRFTAGVRRWAGGEPRDVPLPRVCDPGTVLFESASERSRPSLS 206
BLAST of mRNA_Ecto-sp6_S_contig86.17725.1 vs. uniprot
Match: A0A6H5KZP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP0_9PHAE) HSP 1 Score: 281 bits (720), Expect = 1.360e-91 Identity = 164/267 (61.42%), Postives = 176/267 (65.92%), Query Frame = 1
Query: 214 MTSVCKSDLSGLPTFNVAGGRPDERFGTRGSFSPGVRIMSGGHTRDVPREAEVDHGKVLFVSAVHKPDLSAEARTNAVRPTERLGTRGRFTPGERRWVGGKPRDV-PLEAEVDHGKVLFVSAVHKPDLSAEARTNAIRPTERLGSRGRFTAGVRGWAGGKPRDVPLPRMRDPGTVLFESASERSRPSMSFSGETNVSGGREDERRGKLGSFEHGVVEARGGPLQVQAAFASEVELLWHEGGQKENKYRRCGPSHFVAGVSILSGGMP 1011
MTSV K DLSGLPTFNVAGGRPD RFGTRGSF+ GVRIMSGGH R VPREAEVDHG V A R G R P G PR+ PL H + + P AIRPTERLGSRGRFT+G+RGWAGGKP DV LPR+RDPGTVLFESASERSRPS+SFSGETNVSGG+EDE ARGGPLQVQAAF SEVELLW EGGQ+E+KYRRCGPSH+V GVSI G MP
Sbjct: 1 MTSVYKPDLSGLPTFNVAGGRPDGRFGTRGSFTLGVRIMSGGHARGVPREAEVDHGNVRRAQA----------------GPLRRGPHLRHPPH------GAPRNPGPL-----HAGRTSLGRISPP------WPTAIRPTERLGSRGRFTSGIRGWAGGKPPDVTLPRVRDPGTVLFESASERSRPSLSFSGETNVSGGKEDE--------------ARGGPLQVQAAFTSEVELLWREGGQREHKYRRCGPSHYVTGVSIPFGDMP 220
BLAST of mRNA_Ecto-sp6_S_contig86.17725.1 vs. uniprot
Match: A0A835YKS3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKS3_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 6.680e-13 Identity = 41/79 (51.90%), Postives = 47/79 (59.49%), Query Frame = 1
Query: 259 NVAGGRPDERFGTRGSFSPGVRIMSGGHTRDVPREAEVDHGKVLFVSAVHKPDLSAEARTNAVRPTERLGTRGRFTPGE 495
N+AGGRP ER G RG F+PGV I +GG RDVP AE HG VL+ SA +PD S E R ER G G F G+
Sbjct: 120 NIAGGRPTERLGVRGGFTPGVVICAGGAARDVPIAAERHHGTVLYTSAALRPDASQEPRLKQGTCYERQGRVGSFEHGD 198
BLAST of mRNA_Ecto-sp6_S_contig86.17725.1 vs. uniprot
Match: A0A836CJG1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJG1_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 5.860e-5 Identity = 45/119 (37.82%), Postives = 49/119 (41.18%), Query Frame = 1
Query: 256 FNVAGGRPDERFGTRGSFSPGVRIMSGGHTR------------------DVPREAEVDHGKVLFVSAVHKPDLSAEARTN-AVRPTERLGTRGRFTPGERRWVGGKPRDVPLEAEVDHG 555
NV GGRP ER G RGSF+PG RI++GG R DVP D G+VL PDLS AR R ER G G F G R D E D G
Sbjct: 144 MNVVGGRPTERRGARGSFTPGSRILAGGPARASLPLLPPPEGDXXXXXXDVP-----DRGRVLSSCERLTPDLSGAARCKPGTRGEERWGRVGSFEGGATRLRMPSAADAARWREDDGG 257 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig86.17725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig86.17725.1 >prot_Ecto-sp6_S_contig86.17725.1 ID=prot_Ecto-sp6_S_contig86.17725.1|Name=mRNA_Ecto-sp6_S_contig86.17725.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=340bp QSSPDHAIPNKLPAPPPSAQLPLSPTLTSSQDQHHPHLYFHRPSRISFRWback to top mRNA from alignment at Ecto-sp6_S_contig86:152740..155811+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig86.17725.1 ID=mRNA_Ecto-sp6_S_contig86.17725.1|Name=mRNA_Ecto-sp6_S_contig86.17725.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3072bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:152740..155811+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig86:152740..155811+ >mRNA_Ecto-sp6_S_contig86.17725.1 ID=mRNA_Ecto-sp6_S_contig86.17725.1|Name=mRNA_Ecto-sp6_S_contig86.17725.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1020bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:152740..155811+ (Ectocarpus species6 EcLAC_371)back to top |