mRNA_Ecto-sp6_S_contig86.17724.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig86.17724.1 vs. uniprot
Match: A0A6H5L0Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y9_9PHAE) HSP 1 Score: 807 bits (2084), Expect = 7.000e-271 Identity = 774/953 (81.22%), Postives = 792/953 (83.11%), Query Frame = 1
Query: 55 ATAMKATIPPPSTPVTLPTPTNGASASGASGTNGAATGPFGSASXXXXXXAVGAESGTVKAVVAPRTVKGVKSVVAAGGTKSLGVLRPAEMGGSRARKIKVKGLYARARKILRSSSPSASETAAAILEEALTVDPQDGHSWLLLARTREAMGDVNAASDVFKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAREILEGSRQSVAISQALAELLATHGQVEEGRGLLQKAMDRLEKAASARSKRSGGGGSPDPSAAWAAAGDRPKKRSAEEAEDADQGVTALLMAWANFEESRGNEKRSLELMAKAMENEPDNARARVGRARFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKIAEAATARFPWDKFLLQTMGTVHGKLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSKKAAAGQKDGVVAGDPVIEYVGNASDDGTILGEASDAVAGGSGGTADENDSGAAGEGGVSRTEEEEEGTPSYEEARRLFELGVLADPTHGPLYNAYGSMEARLGNVEHARNVYKRGIAARCSGAVHVWQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----VERYPSGSQLLLGAGLAIAKMGEPDNAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVEKLKARGEKALVESGAAPDKIKEFQQQMEAFKSFARFDATFSSERMASSLDQSSLEDFDFDW 2901
AT MKAT PPPSTPVTL TPTNGASASGASGT+GAATG +GSAS V A+SGTVK+VVAPRTV GVKSVVA GGTK LGVLRPAEMG SRARKIKVKGLYARARKILRSSSPSASETAAAILEEALTVDPQDGHSWLLLARTREAMGDVNAASDVFKR +GSRQSVAISQALAELLATHGQVEEGRGLLQKAMDRLEKAASARSKRSGG GSPDPSAAWAAAGDRPKKRSAEEAED+DQG+TALLMAWANFEESRGNEKR+LELMAKAMENEPDNARARVGRAR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKIAEAATARFPWDKFLLQTMGTVHGKLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSK+ AAGQ+ VVAGDPV+EYVG+ASDDGTILGEASDAVAGGSGGTA E GVSRTEEEE G PSYEEARRLFELG+LADPTHGPLYNAYGSMEA+LGNVEHAR+VYKRGIAARCSGAVHVWQG VERYP+GSQLLLGAGLAIAKMGEPDNAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVEKLKARGEKALVESGAAPDKIKEFQQQMEAFKSFARFDATFSSERMA+SLD SSLE+FDFDW
Sbjct: 120 ATTMKATTPPPSTPVTLLTPTNGASASGASGTSGAATGAYGSASTNGAAPGVRADSGTVKSVVAPRTVNGVKSVVAVGGTKRLGVLRPAEMGSSRARKIKVKGLYARARKILRSSSPSASETAAAILEEALTVDPQDGHSWLLLARTREAMGDVNAASDVFKRAVVECPGNAHLWQSWGMLQAKFGDCAKARISFSNGLEADPGRMRYSSPTFLPSYS-----------QGSRQSVAISQALAELLATHGQVEEGRGLLQKAMDRLEKAASARSKRSGGEGSPDPSAAWAAAGDRPKKRSAEEAEDSDQGLTALLMAWANFEESRGNEKRALELMAKAMENEPDNARARVGRARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKIAEAATARFPWDKFLLQTMGTVHGKLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSKETAAGQEQDVVAGDPVVEYVGDASDDGTILGEASDAVAGGSGGTAAEXXXXXXXXXGVSRTEEEE-GPPSYEEARRLFELGILADPTHGPLYNAYGSMEAKLGNVEHARSVYKRGIAARCSGAVHVWQGFGKLEASEGNRDAARKARPTIFARGIRESSEDVSFLCHSLGSLELAADRLGEARAVFLAGVERYPNGSQLLLGAGLAIAKMGEPDNAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVEKLKARGEKALVESGAAPDKIKEFQQQMEAFKSFARFDATFSSERMATSLDHSSLEEFDFDW 1060
BLAST of mRNA_Ecto-sp6_S_contig86.17724.1 vs. uniprot
Match: D7G1I2_ECTSI (PsbB mRNA maturation factor Mbb1, chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I2_ECTSI) HSP 1 Score: 802 bits (2071), Expect = 4.150e-270 Identity = 828/889 (93.14%), Postives = 834/889 (93.81%), Query Frame = 1
Query: 235 AVVAPRTVKGVKSVVAAGGTKSLGVLRPAEMGGSRARKIKVKGLYARARKILRSSSPSASETAAAILEEALTVDPQDGHSWLLLARTREAMGDVNAASDVFKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAREILEGSRQSVAISQALAELLATHGQVEEGRGLLQKAMDRLEKAASARSKRSGGGGSPDPSAAWAAAGDRPKKRSAEEAEDADQGVTALLMAWANFEESRGNEKRSLELMAKAMENEPDNARARVGRARFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKIAEAATARFPWDKFLLQTMGTVHGKLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSKKAAAGQKDGVVAGDPVIEYVGNASDDGTILGEASDAVAGGSGGTADENDSGAAGEGGVSRTEEEEEGTPSYEEARRLFELGVLADPTHGPLYNAYGSMEARLGNVEHARNVYKRGIAARCSGAVHVWQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVERYPSGSQLLLGAGLAIAKMGEPDNAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVEKLKARGEKALVESGAAPDKIKEFQQQMEAFKSFARFDATFSSERMASSLDQSSLEDFDFDW 2901
AVVAPRTV GVKSVVAAGGTKSLGVLRPAEMGGSRAR+IKVKGLYARARKILRSSSPSASETAAAILEEALTVDPQDGHSWLLLARTREAMGDVNAASDVFKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAREILEGSRQSVAISQALAELLATHGQVEEGRGLLQKAMDRLEKAASARSKRSGGGGSPDPSAAWAAAGDRPKKRSAEEAEDADQGVTALLMAWANFEESRGNEKRSLELMAKAMENEPDNARARVGRARFE LKIAEAATARFPWDKFLLQTMGTVHGKLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSKK AAG K GVVAGDPV+EYVG+ASDDGTILGEASDAVAGGSGGTADEND EGGVSRTEEEE G PSYEEARRLFELG+LADPTHGPLYNAYGSMEA+LGNVEHARNVYKRGIAARCSGAVHVWQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ERYPSGSQLLLGAGLAIAKMGEPDNAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF+EKLKARGEKALVESGAAPDKIKEFQQQMEAFKSFARFDATFSSERMASSLDQSSLEDFDFDW
Sbjct: 90 AVVAPRTVNGVKSVVAAGGTKSLGVLRPAEMGGSRARRIKVKGLYARARKILRSSSPSASETAAAILEEALTVDPQDGHSWLLLARTREAMGDVNAASDVFKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAREILEGSRQSVAISQALAELLATHGQVEEGRGLLQKAMDRLEKAASARSKRSGGGGSPDPSAAWAAAGDRPKKRSAEEAEDADQGVTALLMAWANFEESRGNEKRSLELMAKAMENEPDNARARVGRARFEMRRGNMRDARIFLSEAANLPQEDGTLFSMWATLEIKEGNLETALKIAEAATARFPWDKFLLQTMGTVHGKLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSKKTAAGPKYGVVAGDPVVEYVGDASDDGTILGEASDAVAGGSGGTADENDGXXXXEGGVSRTEEEE-GPPSYEEARRLFELGILADPTHGPLYNAYGSMEAKLGNVEHARNVYKRGIAARCSGAVHVWQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERYPSGSQLLLGAGLAIAKMGEPDNAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLEKLKARGEKALVESGAAPDKIKEFQQQMEAFKSFARFDATFSSERMASSLDQSSLEDFDFDW 977
BLAST of mRNA_Ecto-sp6_S_contig86.17724.1 vs. uniprot
Match: A0A7S2DH37_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DH37_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.160e-13 Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 1
Query: 1654 EEEEGTPSYEEARRLFELGVLADPTHGPLYNAYGSMEARLGNVEHARNVYKRGIAARCSGAVHVWQG 1854
E+++G EARRLFELG+ ADP+HGPLYNAYG+MEAR N + AR V +RGIAA+C+ HVW G
Sbjct: 312 EKQKGKIRVVEARRLFELGIKADPSHGPLYNAYGAMEARHRNFQEARLVLERGIAAKCTDMAHVWHG 378
BLAST of mRNA_Ecto-sp6_S_contig86.17724.1 vs. uniprot
Match: A0A835Z4V8_9STRA (PsbB mRNA maturation factor Mbb1, chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V8_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 9.180e-13 Identity = 65/167 (38.92%), Postives = 85/167 (50.90%), Query Frame = 1
Query: 1363 YRRSIALSPAAPAYVAWALVVAKLAERAERNASSKKAAAGQKDGVVAGDPVIEYVGNASDDGTILGEASDAVAGGSGGTADENDSGAAGEGGVSRTEEEEEGTPSYE---EARRLFELGVLADPTHGPLYNAYGSMEARLGNVEHARNVYKRGIAARCSGAVHVWQG 1854
YR S + P APA+VAWAL+ KLA AER A++ A + + DD +A+DA+ +G G+ R E ARRLFELG+ ADP HGPLYNAYG+ EAR G+V+ AR V++RG+AA C+ VW G
Sbjct: 363 YRASTQIRPTAPAFVAWALLEDKLA--AERAAAAXXAT-----------DLTPSPNSKEDD-----DATDAILTSTGKRL-----------GLERARSAEADADVERCRANARRLFELGIRADPKHGPLYNAYGATEARWGDVDAARAVFRRGVAAHCTDMASVWHG 500
BLAST of mRNA_Ecto-sp6_S_contig86.17724.1 vs. uniprot
Match: A0A6S8QV48_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8QV48_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 1.170e-7 Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query: 1678 YEEARRLFELGVLADPTHGPLYNAYGSMEARLGNVEHARNVYKRGIAARC 1827
Y + RLF+ +L DP HGP+YNAYG+ME ++GNVE AR +Y+ G+ A C
Sbjct: 557 YTKIARLFQEALLLDPRHGPVYNAYGNMELKMGNVEEARRIYQNGVYANC 606
BLAST of mRNA_Ecto-sp6_S_contig86.17724.1 vs. uniprot
Match: W7TSL7_9STRA (PsbB mRNA maturation factor n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSL7_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 2.530e-7 Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 1
Query: 1687 ARRLFELGVLADPTHGPLYNAYGSMEARLGNVEHARNVYKRGIAARC 1827
AR+LF LG+ ADP+HGPLYNAYG ME ++GN+ A+ V++ G+ A C
Sbjct: 511 ARKLFMLGMAADPSHGPLYNAYGRMEEKIGNLTGAQEVFRMGVEAHC 557
BLAST of mRNA_Ecto-sp6_S_contig86.17724.1 vs. uniprot
Match: A0A7S2RLM4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RLM4_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 3.020e-6 Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 1
Query: 1696 LFELGVLADPTHGPLYNAYGSMEARLGNVEHARNVYKRGIAARC 1827
LFE +L DP HGP YNAYG+ME R ++ AR +YKRGI A+C
Sbjct: 285 LFEEALLLDPRHGPAYNAYGNMELRRNDIGFARQIYKRGIQAKC 328
BLAST of mRNA_Ecto-sp6_S_contig86.17724.1 vs. uniprot
Match: A0A7S3LJ22_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LJ22_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 4.280e-6 Identity = 46/200 (23.00%), Postives = 72/200 (36.00%), Query Frame = 1
Query: 1255 KIAEAATARFPWDKFLLQTMGTVHGKLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSKKAAAGQKDGVVAGDPVIEYVGNASDDGTILGEASDAVAGGSGGTADENDSGAAGEGGVSRTEEEEEGTPSYEEARRLFELGVLADPTHGPLYNAYGSMEARLGNVEHARNVYKRGIAARCSGAVHVWQG 1854
KI A R+P D +LQ G V ++G + A Y +S+ + P+AP VA+A++ + + GT ++ RLFE ++ DP HGP YN+YG+ GNV AR +++RG+ C+ A V+ G
Sbjct: 141 KILRRAVERYPKDHSVLQAAGKVEERVGNFSGARNFYSQSLCVQPSAPTLVAYAMLELRRPQS--------------------------------------------------------------------------GTMNFTMVERLFEEALMLDPRHGPAYNSYGNAHLNRGNVIDARGIFERGVKNDCTDAASVYHG 266 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig86.17724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig86.17724.1 >prot_Ecto-sp6_S_contig86.17724.1 ID=prot_Ecto-sp6_S_contig86.17724.1|Name=mRNA_Ecto-sp6_S_contig86.17724.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=947bp MKATIPPPSTPVTLPTPTNGASASGASGTNGAATGPFGSASTNGAASAVGback to top mRNA from alignment at Ecto-sp6_S_contig86:129547..146444+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig86.17724.1 ID=mRNA_Ecto-sp6_S_contig86.17724.1|Name=mRNA_Ecto-sp6_S_contig86.17724.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=16898bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:129547..146444+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig86:129547..146444+ >mRNA_Ecto-sp6_S_contig86.17724.1 ID=mRNA_Ecto-sp6_S_contig86.17724.1|Name=mRNA_Ecto-sp6_S_contig86.17724.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2841bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:129547..146444+ (Ectocarpus species6 EcLAC_371)back to top |