mRNA_Ecto-sp6_S_contig86.17723.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig86.17723.1
Unique NamemRNA_Ecto-sp6_S_contig86.17723.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig86.17723.1 vs. uniprot
Match: A0A6H5L191_9PHAE (OTU domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L191_9PHAE)

HSP 1 Score: 399 bits (1024), Expect = 4.400e-135
Identity = 192/203 (94.58%), Postives = 194/203 (95.57%), Query Frame = 2 
Query:   38 LDTP*RKATT*KGGDTALMPDAGKLILYPRELFQAIPNGGKGDCGPAALWHLIYGGRPTSRDLKEMRNQAVDQVYSHPTRYMDFFDGETEGRRKGMLYKWTRLMRQKGEWADQLFINAVARAHEVNIRILVPEKNNTLRDEQGNYAGQGTARRTYYMLHTGGNHFEALKALGEVKPIDGWTVQEVMLEEDRSSSTSPVGAGDQ 646
            L TP R+ TT KGGD A+MPDAGKLILYPRELFQAIPNGGKGDCGPAALWHLIYGGRPTSRDLKEMRNQAVDQVYSHP RYMDFFDGETEGRRKGMLYKWTRLMRQKGEWADQLFINAVARAHEVNIRILVPEKNNTLRDEQGNYAGQGTARRTYYMLHTGGNHFEALKALGEVKPIDGW VQEVMLEEDRSSSTS V AGDQ
Sbjct:   10 LSTPWRETTTSKGGDAAVMPDAGKLILYPRELFQAIPNGGKGDCGPAALWHLIYGGRPTSRDLKEMRNQAVDQVYSHPARYMDFFDGETEGRRKGMLYKWTRLMRQKGEWADQLFINAVARAHEVNIRILVPEKNNTLRDEQGNYAGQGTARRTYYMLHTGGNHFEALKALGEVKPIDGWKVQEVMLEEDRSSSTSSVRAGDQ 212
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig86.17723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L191_9PHAE4.400e-13594.58OTU domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig86contigEcto-sp6_S_contig86:118266..122273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1575
Hectar predicted targeting categoryother localisation
Exons5
Cds size558
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig86.17723.1prot_Ecto-sp6_S_contig86.17723.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig86 118357..121347 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350487.1355822-UTR-Ecto-sp6_S_contig86:118265..1183561682350487.1355822-UTR-Ecto-sp6_S_contig86:118265..118356Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig86 118266..118356 +
1682350487.1994753-UTR-Ecto-sp6_S_contig86:121347..1222731682350487.1994753-UTR-Ecto-sp6_S_contig86:121347..122273Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig86 121348..122273 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350487.1458313-CDS-Ecto-sp6_S_contig86:118356..1183891682350487.1458313-CDS-Ecto-sp6_S_contig86:118356..118389Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 118357..118389 +
1682350487.15565-CDS-Ecto-sp6_S_contig86:119532..1196641682350487.15565-CDS-Ecto-sp6_S_contig86:119532..119664Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 119533..119664 +
1682350487.168111-CDS-Ecto-sp6_S_contig86:120124..1202771682350487.168111-CDS-Ecto-sp6_S_contig86:120124..120277Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 120125..120277 +
1682350487.1826687-CDS-Ecto-sp6_S_contig86:120590..1207701682350487.1826687-CDS-Ecto-sp6_S_contig86:120590..120770Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 120591..120770 +
1682350487.191021-CDS-Ecto-sp6_S_contig86:121287..1213471682350487.191021-CDS-Ecto-sp6_S_contig86:121287..121347Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 121288..121347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig86.17723.1

>prot_Ecto-sp6_S_contig86.17723.1 ID=prot_Ecto-sp6_S_contig86.17723.1|Name=mRNA_Ecto-sp6_S_contig86.17723.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=186bp
MPDAGKLILYPRELFQAIPNGGKGDCGPAALWHLIYGGRPTSRDLKEMRN
QAVDQVYSHPTRYMDFFDGETEGRRKGMLYKWTRLMRQKGEWADQLFINA
VARAHEVNIRILVPEKNNTLRDEQGNYAGQGTARRTYYMLHTGGNHFEAL
KALGEVKPIDGWTVQEVMLEEDRSSSTSPVGAGDQ*
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mRNA from alignment at Ecto-sp6_S_contig86:118266..122273+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig86.17723.1 ID=mRNA_Ecto-sp6_S_contig86.17723.1|Name=mRNA_Ecto-sp6_S_contig86.17723.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4008bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:118266..122273+ (Ectocarpus species6 EcLAC_371)
GGACCAGGCATGTCCTTGCGCAACGTGTGGAGGGAGGCTGGATACACCGT
GAAGAAAAGCAACGACTTAGAAAGGGGGAGACACGGCACTCATGCCTGAT
GCAGGGAAGTTAATCCTCTATCCGGTGAGTTTTTCTGAATTGTAGAAGCT
GCCACCGACCAATGACGTGTACTCATGCAGCCCGCCGCATGCGGTGGAAC
TTCACCTGAAGCCGACCCAACGCAGCGCTTCCTTTCTTGATACAGTTTGC
CTTGCTACCGGCTTTCGCTGTGGCCAACACGTGATTGTTATGCGACAGAA
TATCTTCACCATGCGCCCGAGCCACGGTTTGAACGAAGCGGTTGGTGAAG
AGCATTGCTATGCTCCGATTGTTCTCTCTTCTGACTTCTCACGGTTACTT
TTTCCCGACGAGTCTACCCATACACGGTTGACACTCAGCTTTTTATCGCA
CGATCCCACCTCTGACGAGAGTACCGTAACCTCGCTCGCTATTCAAAACA
CATCACTAGAGCAGCAAATGTCGAAATTTATCCCAACAATAGACAGTTGG
GGTTAACAAGACAGCAGTCTAGATGCTCGGAGGCGGCGAAGAAATACGAA
CCTGGAACCTCGACGCAAACGCAAAGACAACGCTGTTGGATAGCGGGGCC
GGTATAGCAGTCGGGGCGGAATCTCTTGGCACAGATAGAATGACAACTGG
GCGGGGTAGGTGCCCGCGATAGGGCGGGCGGACCTGCCTGCCACAACCCC
ACCCTTTTGAAGAAGCCCGTACTGCTGTATCAGGGCTGTTATTGAGCGGT
AGCCTTCAAGTGCCGCAGTATGCATCGGATATGCGGATGCAGAACGCTTC
ACACGCATGAGAAGAGAACCTGTTGAGAATTCCGGCTCAAGACACGAGAA
ATTTCAGAACAGGACCATTAGTGGCTGCATCAGCGTTGAACATCAGCGTG
TGTGGGACCCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCCCTCTCTCTTTCTGTTTGTTGTTTGGTGACCTTTGATTGGCGATGACC
GGCGTCAGCCGCACTCGTGCGCTGTCATGTCAAAACCGCGCGGCCTTGCT
ATGTCGACACAAAGCAGGTCAGATGCTTTGTACTCCGCTCATTAGTGCGA
TGTAGACGGAGAAGCGCAATCCTGACCAAGACCTCAACGCTCTCGTTCCG
GATGTTGAATAAACATTCATCTAAACACCGTCCGTCGCCACACAAAAAAC
ACAACACGGTGTAACAGAGGGAGTTGTTCCAGGCGATTCCCAACGGCGGG
AAGGGGGACTGTGGCCCGGCTGCTCTGTGGCACTTGATTTACGGCGGGCG
TCCCACCAGCCGCGACCTAAAGGAGATGCGGAATCAGGCGGTGGACCAGG
TAGGGCTGGGTGTACGACAGCCAAGCAGAGGTTCAGATCGATGGGAAGAT
GAAGACTTCGTTGCCGGAATCGTGGTATTCGAGTTTTCAACTATTGTTTT
TTGTTCGTACGTGTTTGGGTCGGTGACAAGCGGTCAGACCATATTCTATG
TTGGCACGCTAGTGCTGTACTTTTATTTTGCATTGCCATCAGCTTCTCAA
AAGAAAATGGGTGAGGAACGTGGTGGTTGACTTGTCCGCCCAGACGAATG
CACACTCCGATTGGCCAGTACCTGAATGGCCCGAACGATTAAAAGAGCAG
CGCCTGCACAACAAAGACAACTACAACATGACTGGGAAACGAGACGTTCA
GGAAACCCTATTTCATCGTTCTTATGGGCGCGAAAAACAACTACTCAAGC
CACAACAATGGCATTGTGTTGACCCCCCGAACCCGCCATATTGTTGCTGA
GCTACAAAGGTTTACAGCCACCCTACTCGGTACATGGATTTTTTCGACGG
CGAGACGGAGGGGAGGCGAAAAGGGATGCTATATAAATGGACAAGGCTGA
TGAGACAAAAGGGCGAGTGGGCGGATCAGCTGTTTATCAACGCAGTCGCC
AGAGCACACGAGGTGCGGGTGGCTTCCGATGCCATCGCCGTTTGAACAGA
GCATGGATCGCTGCTTGTGTTGCCACAACGCGTTGGCACGGCTGACCATC
TTGCTCACGCACCTGCTCGAAACCTGCGTTCGTGATGCTTGCCGTGTCCC
ATGTTTGCTTTGCTGCGGCTCGATGCCACCTGGTGTGTTGAAGTACCATC
CCGCGTATCTTCGTCTGTCTGCTGTCTTGTCTTTGTGTGTTGGCTACTTC
TAGGTACCCTTTTGATTTGTGCCAGGTAGACAACTCTGCGCGTTTTCCTT
TTTTTTTCGTACCTCGATGGTGAAGGTTAACATTCGGATCCTGGTACCGG
AAAAGAATAATACTCTACGTGACGAGCAAGGAAACTACGCCGGCCAGGGC
ACCGCTCGAAGGACGTACTACATGCTGCACACCGGCGGCAACCACTTCGA
GGCTCTCAAGGCGCTTGGCGAGGTCAAGCCCATCGACGGCTGGACGGTTC
AAGAGGTGTAGAAATGATGGTTGACGGTGGCGTTCGCGATGGTCGTGCTC
CATGTTCATGACTTGGAGATGTTCTAACTGGTTGTTTTTGTTGTGGCGGG
TGTTGATTGCATGGTGCTACACTACCGTATCACGAGCTGTGCTGACGCTT
CGGTATATCGTAGGTTCTCCTACGTGCACGTTGACCTGACAACGAAGAAT
CTTTTCAGTACGGAGGCTCAAGAATTGGGGTCCTCAATATGAGGTATTGA
GGCGTCTCCTGCCAACTGCGGTATGCATACCCTGGATTTTGTTTTTCTTG
TGGCGTTGGGTGTTGTGGAGAAGAAAAGCAACGAGGGCAGGAGCCCCATT
CGTCGGAGCTTGTCCCCCGTTTCCAAGTGGTTATTGGCTTTAGCTAGTAT
GTTATCCCGAAATGCCACCGAGAACGTCGGGATATCTGTTGCCACCCTCG
AATTCGCGGTGCTTACGGATGGCTTGATTTTTTTGTTTTTGCGTTCACCC
CCGTGGGTTGTCCTGCACAAAGGTGATGCTCGAGGAGGATAGGTCATCTT
CGACGTCGCCTGTTGGGGCGGGAGACCAATAGGAAAGTCCGAAGGCGCCG
AGCACTGCTGCTGCAGGAACGAACAAAAAGATACTGTACACACGAATTAG
CACAAACATGTGACGGGGGAAAGCCTACAGGGCAGGTCCCTAATGGTGGC
ATTATCGGCAAGAAGACATGGTGGAGCTCTCTCGCTTCCTGGAAGTATCG
AGATTGTGGGGTACAGCGGGTGGGTAGCACGGCTAGAGACGGAGAAAGAC
GGCGGCGCGCATGGCGGGGAAATAGAGAAGATGGTCGACTGGATGACCGT
TTTTCAGACAGCCGGCGGCGTTAGCTTTCGAATCCATGTCGGGACTCTCC
TCGTGCGACGAGAGGGGGGTCGGGAGCTTGTTCCACTGAGCATGTTGGCA
ACAGTACGGTGAGGTGGGTGAGGAGAGAAGGGTGTTGGAGTTGTGGTGAT
GTACAGAGAACTTGATGTGTGGTCGGGAGACAACCCTTTTTGTGCGTTCG
GTGTGTGGGGTGGAATAGAAAATGATAGAGGAGTGAGTGGTCATGAGCAG
TACGCAGCTGGTGTACCCCCCGGTGCAACAGCGTTTGCAGTACGAGACCT
ATTTGGATAAGAAACGGAATGCCAGGTACTTTCAGGCTACCTCTGCCGAG
CGTCATGTATATTTCCCACAGGGAGAGGGCAGCACGGAGATGAGAACGGA
TCGTTGAGGCTCAATCAACGTTGTGAATGCGTGTCTCTCGTGGGTGAAAT
GAGCTCGAGACGGGCAAGCTTGGTGTCGTGCATGATGCGTTTTGAGTGAA
GTAGTTGTTTCTCTTATTTCGGAAATCAAGCGACTGCTGATGCTAGTATG
CAACGGAAGTTCTTTGTGCCATATCTCAGGACAAGGCGGTGAAAGACAAG
TTGATCTACAACTGCTATCGTATGATAGCCACCATTCGCCTACGTAGAGC
TCGGCTGT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig86:118266..122273+

>mRNA_Ecto-sp6_S_contig86.17723.1 ID=mRNA_Ecto-sp6_S_contig86.17723.1|Name=mRNA_Ecto-sp6_S_contig86.17723.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=558bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:118266..122273+ (Ectocarpus species6 EcLAC_371)
ATGCCTGATGCAGGGAAGTTAATCCTCTATCCGAGGGAGTTGTTCCAGGC
GATTCCCAACGGCGGGAAGGGGGACTGTGGCCCGGCTGCTCTGTGGCACT
TGATTTACGGCGGGCGTCCCACCAGCCGCGACCTAAAGGAGATGCGGAAT
CAGGCGGTGGACCAGGTTTACAGCCACCCTACTCGGTACATGGATTTTTT
CGACGGCGAGACGGAGGGGAGGCGAAAAGGGATGCTATATAAATGGACAA
GGCTGATGAGACAAAAGGGCGAGTGGGCGGATCAGCTGTTTATCAACGCA
GTCGCCAGAGCACACGAGGTTAACATTCGGATCCTGGTACCGGAAAAGAA
TAATACTCTACGTGACGAGCAAGGAAACTACGCCGGCCAGGGCACCGCTC
GAAGGACGTACTACATGCTGCACACCGGCGGCAACCACTTCGAGGCTCTC
AAGGCGCTTGGCGAGGTCAAGCCCATCGACGGCTGGACGGTTCAAGAGGT
GATGCTCGAGGAGGATAGGTCATCTTCGACGTCGCCTGTTGGGGCGGGAG
ACCAATAG
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