mRNA_Ecto-sp6_S_contig86.17722.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig86.17722.1
Unique NamemRNA_Ecto-sp6_S_contig86.17722.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig86.17722.1 vs. uniprot
Match: D7G1I4_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I4_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 2.600e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:   61 MGNCIITPPSQVAVISGPGKSRMVIGQCAFQKWFI 165
            MGNCIITPPSQVAVISGPGKSRMVIGQCAFQKWFI
Sbjct:    1 MGNCIITPPSQVAVISGPGKSRMVIGQCAFQKWFI 35
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig86.17722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1I4_ECTSI2.600e-12100.00PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig86contigEcto-sp6_S_contig86:115548..117317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score79.3
Seed ortholog evalue4.2e-13
Seed eggNOG ortholog2880.D7G1I4
Preferred nameFLOT2
Model size1178
KEGG koko:K07192
KEGG Pathwayko04910,map04910
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001666,GO:0001669,GO:0001765,GO:0001931,GO:0002020,GO:0002080,GO:0002252,GO:0002376,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002791,GO:0002793,GO:0003674,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005886,GO:0005901,GO:0005911,GO:0005912,GO:0005913,GO:0006582,GO:0006725,GO:0006810,GO:0006897,GO:0006950,GO:0006952,GO:0006955,GO:0007155,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008544,GO:0009506,GO:0009628,GO:0009877,GO:0009888,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010324,GO:0010468,GO:0010470,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016324,GO:0016600,GO:0018958,GO:0019222,GO:0019748,GO:0019899,GO:0022407,GO:0022409,GO:0022603,GO:0022607,GO:0022610,GO:0022622,GO:0023051,GO:0023056,GO:0030027,GO:0030054,GO:0030111,GO:0030139,GO:0030141,GO:0030155,GO:0030177,GO:0030659,GO:0030667,GO:0031090,GO:0031252,GO:0031254,GO:0031410,GO:0031579,GO:0031647,GO:0031982,GO:0032501,GO:0032502,GO:0032878,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0035006,GO:0035010,GO:0035011,GO:0035254,GO:0035255,GO:0035592,GO:0035593,GO:0036293,GO:0036294,GO:0042221,GO:0042440,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044091,GO:0044237,GO:0044291,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044853,GO:0044860,GO:0045087,GO:0045121,GO:0045177,GO:0045184,GO:0045595,GO:0045661,GO:0045785,GO:0045995,GO:0046982,GO:0046983,GO:0048364,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050708,GO:0050714,GO:0050789,GO:0050793,GO:0050794,GO:0050821,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051246,GO:0051248,GO:0051249,GO:0051251,GO:0051641,GO:0051704,GO:0051716,GO:0055044,GO:0060255,GO:0061024,GO:0061356,GO:0061357,GO:0065007,GO:0065008,GO:0070161,GO:0070201,GO:0070482,GO:0070727,GO:0070887,GO:0071453,GO:0071456,GO:0071692,GO:0071704,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0080090,GO:0090087,GO:0097223,GO:0097708,GO:0098588,GO:0098589,GO:0098590,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0098857,GO:0099402,GO:0099503,GO:0120025,GO:1901360,GO:1901615,GO:1902991,GO:1902992,GO:1903037,GO:1903039,GO:1903044,GO:1903530,GO:1903532,GO:1903903,GO:1903905,GO:1904086,GO:1904951,GO:1905330,GO:1990778,GO:2000026,GO:2000047,GO:2000114
Exons3
EggNOG free text desc.protein localization to membrane raft
EggNOG OGsCOG2268@1,KOG2668@2759
Cds size114
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350487.066516-UTR-Ecto-sp6_S_contig86:115547..1165511682350487.066516-UTR-Ecto-sp6_S_contig86:115547..116551Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig86 115548..116551 -
1682350487.1078732-UTR-Ecto-sp6_S_contig86:117257..1173171682350487.1078732-UTR-Ecto-sp6_S_contig86:117257..117317Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig86 117258..117317 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350487.0794492-CDS-Ecto-sp6_S_contig86:116551..1165821682350487.0794492-CDS-Ecto-sp6_S_contig86:116551..116582Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 116552..116582 -
1682350487.0889406-CDS-Ecto-sp6_S_contig86:116925..1170041682350487.0889406-CDS-Ecto-sp6_S_contig86:116925..117004Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 116926..117004 -
1682350487.0984535-CDS-Ecto-sp6_S_contig86:117253..1172571682350487.0984535-CDS-Ecto-sp6_S_contig86:117253..117257Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 117254..117257 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig86.17722.1prot_Ecto-sp6_S_contig86.17722.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig86 116552..117257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig86.17722.1

>prot_Ecto-sp6_S_contig86.17722.1 ID=prot_Ecto-sp6_S_contig86.17722.1|Name=mRNA_Ecto-sp6_S_contig86.17722.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=38bp
MGNCIITPPSQVAVISGPGKSRMVIGQCAFQKWFIGE*
back to top

mRNA from alignment at Ecto-sp6_S_contig86:115548..117317-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig86.17722.1 ID=mRNA_Ecto-sp6_S_contig86.17722.1|Name=mRNA_Ecto-sp6_S_contig86.17722.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1770bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:115548..117317- (Ectocarpus species6 EcLAC_371)
GCTGGACGCTGTTGCTGTCTAATCCCCACCCTTTGCGGAAGAAGGAAGCG
CTACTACATCATGGGTGAGATACGAAAAGACACAAACGGCAGCACAGCAG
GTTACAGCAGGCTAGGGCTAACATTAGTCTGCTTTTGTACTGCTCCATCA
CGATGGGTCTGTCGCACCACGTAAAAGTGCTCCTGTCCTCAAGTAGGAGA
TGCCGCCATTGAACTACTCTGGACGTGATGAATGTCTGAGTCACTCTATC
CACCCGCCTAACTCTAATTTATGCGAGCACTGCTGGCCTTTCGTCCTGCA
ACCTGTTTCGCAGGAAACTGCATCATCACCCCGCCGTCTCAGGTGGCCGT
TATCTCTGGCCCTGGTAAATCCCGCATGGTCATCGGGCAGTGGTGAGCTG
CGCATAGCTGTACATGTAGAACGAGTGGATTGCGCGTGCGGAACACTAAC
CCAACAAACTACTTCAACGCCTGCCTGCTCTGCACTGCTGTAGTCCACGC
ACTGCTCCACTCTGTACATATGTTGCACAACAGCGCAGTCTCGAGCAGCG
CAGGACTGCTGTACAAGAATAGTTATTTTTTGTACAGCAGTCTTCAGCCG
TAGTTCCTTAGTTTCACGCTCGACAACTTCTCGTGTAGACAGATGGTCTA
GCGCGCAATTCGCCACATTCATGCCCGCTAAACAACAGCGCCCTCCCATC
CTCCTGCCTTTGTTGTTTGTCGTTTGTCCCCGCAGCGCATTTCAAAAGTG
GTTTATCGGTGAGTGAGGGTAACTACCTGATCCTGTCGGATGTTGCTCCT
TCCCGGTGCTCCTGGAAATAAATGCAGACTACTTGTTGTACAGAGTAGGG
CCGCTGCCACTTTCTGAGTTGAAGTGTGGAGAAGGACTGTTCTTCATTGT
GTTTGCAAGACTGAAAGCGGTGGTCAGGCGAGCGATCAGAATCGAAACGT
TTGTTGATGTGCGTTTGCTCAGTAGGCAACGATCCTGTGTGGGGCTCATA
GAGTCGTCAGCTGTATGTTTGTGCAGCTTCAGTTGTCATCGTCGTGAAGT
TCTAGCATGGGTAAATAAAGGTATGTGCGATTGCCCAGTCTTTCGTCCGA
CGTTCGGTACATACAGCAGTCGAACCTTTACTAAGGACGTACTCCTTCTA
CTTCTCGGTACTTGGTCTGCAAGACTGCTATCTGTGTATGTATGTAGCTT
GGCCAAAGAAAGCAAGTATCCATCTCTAGCCCGAGGAATTTTCCCGGGCT
TTCTTCGTTAATTTATTCGCGGTAATTTTACCACAGCAGTAAAATGACTG
CTCACTGCCTCTCTACGCCAACTAGGTATATGTGCGTCCTCTTGATTGTT
CTTTCCTTCTCCATTGTTATTTCCTCCTCTTTCGCCTGATTGGCAGATTT
GACCAGAAGGTGTTCATGGTTGATGCTTTTTTGGGGGGCCTGTTTTGCGT
AAGGGTTGTTCTCTTGTTTTTTGTCGAACCGTTCAGTTCCATCGTTTCAG
TGTACGAGGAACGCGGCGCTTTCTTCTTGCCGGCCCTTTCTGCTGATGGC
ATTATTATATTATTTCTTGGCGCAGCGCTGGACTTACCACGTCGTCTTGA
GGCTACGCGAGCCTGCCTGCAATAAAGTGCATTTATATATTATGCTGTCG
GGTTTTCACCCTTCTTTTTAATATGCGACCGGTTTGTTTGGTTGACGGAC
ATGATGCTCAGTGAAAGTGTCGCGCACGTTTGTTGTGCGGTGGCCACACG
CATAAGGAACACTTCAAAGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig86:115548..117317-

>mRNA_Ecto-sp6_S_contig86.17722.1 ID=mRNA_Ecto-sp6_S_contig86.17722.1|Name=mRNA_Ecto-sp6_S_contig86.17722.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=114bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:115548..117317- (Ectocarpus species6 EcLAC_371)
ATGGGAAACTGCATCATCACCCCGCCGTCTCAGGTGGCCGTTATCTCTGG
CCCTGGTAAATCCCGCATGGTCATCGGGCAGTGCGCATTTCAAAAGTGGT
TTATCGGTGAGTGA
back to top