mRNA_Ecto-sp6_S_contig86.17718.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig86.17718.1
Unique NamemRNA_Ecto-sp6_S_contig86.17718.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig86.17718.1 vs. uniprot
Match: D7G1I7_ECTSI (Protein HGH1 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1I7_ECTSI)

HSP 1 Score: 976 bits (2522), Expect = 0.000e+0
Identity = 538/563 (95.56%), Postives = 543/563 (96.45%), Query Frame = 1
Query:    1 ALSTCRSLPDLCALLSLDTRPMSTFEGATAGTKTXXXXXXXXXXXXXTGSITRELIEETVPFLRDPRPEIRQAAAATAVAASATKEGVALLHKCGAVKWLCRISGDVGTIGKDAVSCLVNVSAEETSVAALEDMCKAGIVNRMMEAVSDEQCLPFMRDLCLQLLANVTRVQVGATKLAQVGVAGGALREGQYIRRLARWLAKHPADNGLPYPVLVGGSRDDARVVDRRAALRDTQPDXXXXXXXXGKGATQKRERKGEEVLDQWQHCASVLCNAARIPEGRRALRRPDPLVALTEVLPQLASANPVRRWGIAGCVRNCCFEELDHPWLLHEVKVVPHLLMRLADDKDEYDFEEKVILDPRVWRKEQEEGSSEDSPAAPRRREPVQCIKRDIVEALLQLCAILESRQSLRKCGVYFVIREMDKSEPDAEISQVCYNLVNFLQRDEQDKQGRIDYLKSLADSEGKEAAGSAGEDPATTEPSSEIEVMPPSTASPGSTADRTAFLRDKLVVENGXXXXXXXXXXXXXXXXXXXXXXXVEEFVGEEGGDAMIEMLSAFDDDSGDDET 1689
            +LSTCRSLPDLCALLSLDTRPMSTFEGATAGTKT             TGSITRELIEETVPFLRDPRPEIRQAAAATAVAASATKEGVALLHKCGAVKWLCRISGDVGTIGKDAVSCLVNVSAEETSVAALEDMCKAGIVNRMMEAVSDEQC+PFMRDLCLQLLANVTRVQVGATKLAQVGVAGGALREGQYIRRLARWLAKHPADNGLPYPVLVGGSRDDARVVDRRAALRDTQ D XXXX   G+GATQKRERKG EVLDQWQHCASVLCNAARIPEGRRALRRPDPLVALTEVLPQLASANPVRRWG+AGCVRNCCFEELDHPWLLHEVKVVPHLLMRLADDKDEYDFEEKVILDPRVWRKE+EEGS EDSPAAPRRREPVQCIKRDIVEALLQLCAILESRQSLRKCGVYFVIREMDKSEPDAEISQVCYNLVNFLQRDEQDKQGRIDYLKSLADSEGKEAAGSAGEDPATTEPSSEIEVMPPSTASPGSTADRTAFLRDKLVVENGXXXXXXXXXXXXXXXXXXXXXXXVEEFVGEEGGDAMIEMLSAFDDDSGDDET
Sbjct:    5 SLSTCRSLPDLCALLSLDTRPMSTFEGATAGTKTTGEQTEGNHGERNTGSITRELIEETVPFLRDPRPEIRQAAAATAVAASATKEGVALLHKCGAVKWLCRISGDVGTIGKDAVSCLVNVSAEETSVAALEDMCKAGIVNRMMEAVSDEQCIPFMRDLCLQLLANVTRVQVGATKLAQVGVAGGALREGQYIRRLARWLAKHPADNGLPYPVLVGGSRDDARVVDRRAALRDTQADDXXXXE--GRGATQKRERKGGEVLDQWQHCASVLCNAARIPEGRRALRRPDPLVALTEVLPQLASANPVRRWGVAGCVRNCCFEELDHPWLLHEVKVVPHLLMRLADDKDEYDFEEKVILDPRVWRKEKEEGSYEDSPAAPRRREPVQCIKRDIVEALLQLCAILESRQSLRKCGVYFVIREMDKSEPDAEISQVCYNLVNFLQRDEQDKQGRIDYLKSLADSEGKEAAGSAGEDPATTEPSSEIEVMPPSTASPGSTADRTAFLRDKLVVENGXXXXXXXXXXXXXXXXXXXXXXXVEEFVGEEGGDAMIEMLSAFDDDSGDDET 565          
BLAST of mRNA_Ecto-sp6_S_contig86.17718.1 vs. uniprot
Match: A0A835YVT2_9STRA (DUF383 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVT2_9STRA)

HSP 1 Score: 231 bits (589), Expect = 5.810e-66
Identity = 161/392 (41.07%), Postives = 212/392 (54.08%), Query Frame = 1
Query:  166 IEETVPFLRDPRPEIRQAAAATAVAASATKEGVALLHKCGAVKWLCRISGDVGTIGKDAVSCLVNVSAEETSVAALEDMCKAGIVNRMMEAVSDEQ--CLPFMRDLCLQLLANVTRVQVGATKLAQVGVAGGALREGQYIRRLARWLAKHPADNGLPYPVLVGGSRDDARVVDRRAALRDTQPDXXXXXXXXGKGATQKRERKGEEVLDQWQHCASVLCNAARIPEGRRALRRPDPLVALTEVLPQLASANPVRRWGIAGCVRNCCFEELDHPWLLHEVKVVPHLLMRLADDKDEYDFEEKVILDPRVWRKEQEEGSSEDSPAAPRRREPVQCIKRDIVEALLQLCAILESRQSLRKC-----GVYFVIREMDKSEPDAEISQVCYNLVNFL 1320
            + E VPFLRD RP++R+AAA T +  +AT+EG  +L++ GAV WLC++ GDV  I KD+++ L+N  A+    AA E M  +GIVN +ME V D+   C P  RDLCL LLANVT  + G  ++ Q+G  GG   EG ++RRLAR L                                 T   XXXXXXXX               +DQWQH AS+LCN  R   GR+ L R D  V L ++LPQL SA   RR GI+GC+RN CF+   HP LL   +V+PH+L  LA  +D Y F++KV LDP VWR    EG+          REP    + +++EAL  LCA  ES  +LRK      G Y V+RE  + E D  +   C+ +   L
Sbjct:    8 VAEIVPFLRDSRPDLRKAAANTCMQLAATEEGRLMLYEAGAVPWLCKLVGDVDAIAKDSITALINTGADVP--AATEQMVNSGIVNSVMEVVVDQSQDCTPRRRDLCLTLLANVTTTEPGVERMLQLGGKGGP--EGLHVRRLARALV--------------------------------TTLXXXXXXXXXXXXXXXXXXXXXXXGVDQWQHAASLLCNVTREETGRQILARADTGV-LEDLLPQLRSAVAARRRGISGCIRNLCFDAKLHPRLLDGARVLPHVLRGLASSRDAYSFQDKVALDPMVWRAPAGEGAM-----TFHEREPDAETRGNLLEALQLLCAHPESCAALRKQATLLQGTYCVVRETARRETDERLLVACHAIATAL 357          
BLAST of mRNA_Ecto-sp6_S_contig86.17718.1 vs. uniprot
Match: W4FY03_9STRA (Protein HGH1 homolog n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FY03_9STRA)

HSP 1 Score: 147 bits (370), Expect = 5.460e-35
Identity = 131/412 (31.80%), Postives = 192/412 (46.60%), Query Frame = 1
Query:  148 SITRELIEETVPFLRDPRPEIRQAAAATAVAASATKEGVALLHKCGAVKWLCRISGDVGTIGKDAVSCLVNVSAEETSVAALEDMCKAGIVNRMMEAV-SDEQCLPFMRDLCLQLLANVTRVQVGATKLAQVGVAGGALREGQYIRRLARWLAKHPADNGLPYPVLVGGSRDDARVVDRRAALRDTQPDXXXXXXXXGKGATQKRERKGEEVLDQWQHCASVLCNAARIPEGRRALRR-------PDPLVALTEVL-PQLASANPVRRWGIAGCVRNCCFEELDHPWLLHEVKVVPHLLMRLA-----DDKDEYDFEEKV--ILDPRVWRKEQEEGSSEDSPAAPRRREPVQCIKRDIVEALLQLCAILESRQSLRKCGVYFVIREMDKSEPDAEISQVCYNLVNFLQRDEQ 1335
            S+++E + E V FL +PR ++RQ+A    V  + T  G+  L K  AVK LCR+ GD+  I +DA+  LVN++A  T   A E+  K  IVNR+M  + SD Q     +DL + LLANVT    GA  L  +  A  ++RE        R+L   P  +G+                                            E K +   D +Q+ A+VL N  ++ EGR  L R       P  + +L  VL PQ+ SAN +RR GI   +RN CF+  +H +L   + +V HL  RLA     +D D+      +  +L P+                  ++RE    +++DIVE LL LC+    R  LR+  VY +IR     E D ++S+  Y LV+FL RDE+
Sbjct:    2 SVSKE-VTELVEFLSNPRADVRQSAIQLTVGLTGTDSGIQQLIKADAVKALCRLIGDMNAIARDAIHALVNITA--THHGACENALKHDIVNRLMNQLDSDFQ----HKDLSVMLLANVTTTPEGAKALV-INDAKYSVREVILQNLTVRFLESEPEPDGIDPTT---------------------------------------NEPKWD---DDYQYVANVLANITQLEEGRAFLLRLRTKQGQPGQVQSLVHVLLPQVHSANVIRRRGIIQALRNLCFDSDNHFFLYDTLDIVVHLQRRLAGPEPLEDADKVGMSSSILAVLGPK------------------KKRETDAQVRKDIVECLLLLCSSRNGRNILRQKKVYPIIRNAHLVEADEDVSEQIYKLVDFLIRDEE 345          
BLAST of mRNA_Ecto-sp6_S_contig86.17718.1 vs. uniprot
Match: A0A8K1CI53_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CI53_PYTOL)

HSP 1 Score: 138 bits (347), Expect = 6.930e-32
Identity = 124/416 (29.81%), Postives = 198/416 (47.60%), Query Frame = 1
Query:  166 IEETVPFLRDPRPEIRQAAAATAVAASATKEGV-ALLH--KCGAVKWLCRISGDVGTIGKDAVSCLVNVSAEETSVAALEDMCKAGIVNRMMEAVSDEQCLPFMRDLCLQLLANVTRVQVGATKL----AQVGVAGGALREGQYIRRLARWLAKHPADNGLPYPVLVGGSRDDARVVDRRAALRDTQPDXXXXXXXXGKGATQKRERKGEEVLDQWQHCASVLCNAARIPEGRRALRRPDPLVALTE-VLPQLASANPVRRWGIAGCVRNCCFEELDHPWLLHEVKVVPHLLMRLADDKDEYDFEEKVILDPRVWRKEQEEGSSEDSPAAPRRREPVQCIKRDIVEALLQLCAILESRQSLRKCGVYFVIREMDKSEPDAEISQVCYNLVNFLQRDEQDKQGRIDYLKSLADSEGK 1389
            +E+ V FL  PRPE+R++A++  V  SA+ + V  LLH  K   ++ LCR+  D+  I +DA+  L+N++A      A E   K  ++NR+M  + D++    +++L + LLANVT  + GA  L     Q G A  A RE +       ++   P  +G+                D   A  D                            D++Q+ A +L N +++ EGR+ + +      L E +LPQL S N VRR GI   ++N CF+   H +LL++   +P  LM L    +  D EEK+ + P V++               ++RE  + ++   V+ALL L      R +LR+  VY +IR     EPD EI    Y LV+FL RDE+ ++   D +++ A S+ K
Sbjct:    7 LEDLVGFLSSPRPELRKSASSMLVNLSASDQAVYQLLHLQKNDVIQGLCRVVSDLRPIAEDAIKALINLTAIHPD--ASERTIKFDLLNRVMTQLEDDEWR--LKNLSMMLLANVTTTEAGARALIGADTQAGAATAAYREKKIRTLTVSFMESEPEPDGVD--------------ADSGEAKWD----------------------------DEYQYVAVILGNISQLEEGRQFILKVRNGKTLIEALLPQLRSPNLVRRRGITALIKNLCFDTDSH-FLLYDHLDIPSKLMYLLAGPEPLDPEEKIGMHPDVYKL-----------GPKKKREHDRFVRLACVDALLLLGTSRNGRNNLRQKKVYPIIRNAHLVEPDEEIGDQIYKLVDFLIRDEEGEEPDWDKIRTEAFSDDK 364          
BLAST of mRNA_Ecto-sp6_S_contig86.17718.1 vs. uniprot
Match: A0A2P4WXK1_9STRA (Protein HGH1 homolog (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WXK1_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.420e-31
Identity = 117/399 (29.32%), Postives = 196/399 (49.12%), Query Frame = 1
Query:  166 IEETVPFLRDPRPEIRQAAAATAVAASATKEGV---ALLHKCGAVKWLCRISGDVGTIGKDAVSCLVNVSAEETSVAALEDMCKAGIVNRMMEAVSDEQCLPFMRDLCLQLLANVTRVQVGATKLA----QVGVAGGALREGQYIRRLAR-WLAKHPADNGLPYPVLVGGSRDDARVVDRRAALRDTQPDXXXXXXXXGKGATQKRERKGEEVLDQWQHCASVLCNAARIPEGRRALRRPDPLVALT-EVLPQLASANPVRRWGIAGCVRNCCFEELDHPWLLHEVKVVPHLLMRLADDKDEYDFEEKVILDPRVWRKEQEEGSSEDSPAAPRRREPVQCIKRDIVEALLQLCAILESRQSLRKCGVYFVIREMDKSEPDAEISQVCYNLVNFLQRDEQ 1335
            +EE V FL  PRPE+R++A++  +  +A+ +G+     L K   ++ LCR+  D+  I +DA+  L+N++A   + AA E   K  ++NR+M  V D++    + D  + LLANVT    GA  L     +   A  ALRE + IR L   +L   P  +G+                   +A  + + D                        D++Q+ A++L N +++ +GR  L +     +L   +LPQL S N VRR G+   ++N CF+  +H +L  ++ +  H+++ LA   +E D ++K+ ++P V+           S    ++RE  + ++   V+ LL LC     R+ LR+  VY +IR+    EPD EI    Y LV+FL RDE+
Sbjct:   13 MEELVSFLSHPRPELRKSASSLLINMTASDQGMFQLLQLKKLDVMQALCRVVSDMRPIAEDAIKALINLTA--ANPAACERALKYDLLNRVMTQVEDDEWR--LTDYSMMLLANVTTTPEGAKALLGYDDKSTDASLALRE-KKIRTLTNSFLEGEPEPDGVD------------------SATGEPKWD------------------------DEYQYVANILANISQLEQGRDFLLKMRQSTSLAGALLPQLKSPNVVRRRGVTAALKNLCFDSDNHFYLYDQLDIPTHMMVLLAGP-EELDEDDKMGMNPVVY-----------SQGDKKKREHDRLVRLAAVDCLLLLCTTRNGRKELRRKKVYPIIRDAHLVEPDEEIGDQIYKLVDFLIRDEE 352          
BLAST of mRNA_Ecto-sp6_S_contig86.17718.1 vs. uniprot
Match: K3WKR7_GLOUD (Protein HGH1 homolog n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKR7_GLOUD)

HSP 1 Score: 136 bits (343), Expect = 3.700e-31
Identity = 115/409 (28.12%), Postives = 195/409 (47.68%), Query Frame = 1
Query:  166 IEETVPFLRDPRPEIRQAAAATAVAASATKEGV---ALLHKCGAVKWLCRISGDVGTIGKDAVSCLVNVSAEETSVAALEDMCKAGIVNRMMEAVSDEQCLPFMRDLCLQLLANVTRVQVGATKLAQVGVAGGALREGQYIRRLARWLAKHPADNGLPYPVLVGGSRDDARVVDRRAALRDTQPDXXXXXXXXGKGATQKRERKGEEVL--DQWQHCASVLCNAARIPEGRR-ALRRPDPLVALTEVLPQLASANPVRRWGIAGCVRNCCFEELDHPWLLHEVKVVPHLLMRLADDKDEYDFEEKVILDPRVWRKEQEEGSSEDSPAAPRRREPVQCIKRDIVEALLQLCAILESRQSLRKCGVYFVIREMDKSEPDAEISQVCYNLVNFLQRDEQDKQGRIDYLKSLA 1374
            +EE V FL  PRPE+R++A++  V  +A+ +G+     L K   ++ LCR+  D+  I +DA+  L+N++A   + AA E   K  ++NR+M  + D++    ++D  + LLANV+    GA  L                               + Y         DA+  D   ALR+ +           +   +  +++  +    D++Q+ A++L N +++ EGR   L+       + E+LPQL S N VRR GIA  VRN CF+  +H + L++   +P  +  L    +  D ++KV L P V+R  ++           ++RE  + ++   V+ LL LC     R  LR+  VY ++R     EP+ EI    Y LV+FL RDE  ++   + ++S A
Sbjct:   15 VEELVSFLSHPRPELRKSASSLLVNMTASDQGIHQLMQLAKFDVIQALCRVVSDMRPIAEDAIKALINITA--ANPAACERTLKFDLLNRVMTQIDDDEWR--LKDYSMMLLANVSTTPEGARAL-------------------------------MGY---------DAKSTDALLALREKKMRTLTTLFLESEAEPEGIDQETGDAKWDDEYQYVANILANISQLAEGRDFLLKNRGNTTLIAELLPQLRSPNVVRRRGIASVVRNLCFDTDNH-FFLYDQLDIPSKMNYLLAGPEPLDEDDKVGLHPSVYRLGEK-----------KKREKDKQVRLYAVDCLLLLCTTRNGRNDLRRKKVYPIVRNAHLVEPEEEIGDQIYKLVDFLIRDEDGEEPDWNEIRSKA 367          
BLAST of mRNA_Ecto-sp6_S_contig86.17718.1 vs. uniprot
Match: A0A662XPP2_9STRA (Protein HGH1 homolog n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XPP2_9STRA)

HSP 1 Score: 135 bits (340), Expect = 9.250e-31
Identity = 121/399 (30.33%), Postives = 191/399 (47.87%), Query Frame = 1
Query:  166 IEETVPFLRDPRPEIRQAAAATAVAASATKEGV---ALLHKCGAVKWLCRISGDVGTIGKDAVSCLVNVSAEETSVAALEDMCKAGIVNRMMEAVSDEQCLPFMRDLCLQLLANVTRVQVGATKL----AQVGVAGGALREGQYIRRLAR-WLAKHPADNGLPYPVLVGGSRDDARVVDRRAALRDTQPDXXXXXXXXGKGATQKRERKGEEVLDQWQHCASVLCNAARIPEGRRALRRPDPLVALTEVL-PQLASANPVRRWGIAGCVRNCCFEELDHPWLLHEVKVVPHLLMRLADDKDEYDFEEKVILDPRVWRKEQEEGSSEDSPAAPRRREPVQCIKRDIVEALLQLCAILESRQSLRKCGVYFVIREMDKSEPDAEISQVCYNLVNFLQRDEQ 1335
            +EE V FL  PRPE+R++A++  ++ +A+ + V     L K   V+ LCR+  D+  I +DA+  L+N++A   +  A E   K  ++NR+M  V D +    + D  + LLANVT    GA +L    A+   A  ALRE + IR L   +L   P   G+                   AA  D + D                        D++Q+ A++L N +++ +GR  L +     +L   L PQL S N VRR G+A  ++N CF+  +H +L  ++ V  +++  LA  +   D E+K+ + P V+           S    ++RE  + ++   V+ LL LC     R+ LR+  VY +IR     EPD EI    Y LV+FL RDE+
Sbjct:   13 MEELVSFLSHPRPELRKSASSLLISMTASDQSVFQLLALPKLDVVQALCRVVSDMRPIAEDAIKALINLTAANPT--ACERALKYDLLNRVMTQVEDSEWR--LTDYSMMLLANVTTTPEGAMELLGYDAKATDATLALRE-KKIRTLTNAFLESEPEPEGVD------------------AATGDAKWD------------------------DEYQYVANILANVSQLEQGRAFLLKMRQDTSLVGALMPQLKSPNVVRRRGVAAALKNLCFDSDNHFYLYDQLDVPTNMMCLLAGPEP-LDEEDKLGMSPVVF-----------SQGDKKKREQDRQVRLAAVDCLLLLCTTRNGRKDLRRKKVYPIIRNAHLVEPDEEIGDQIYKLVDFLIRDEE 352          
BLAST of mRNA_Ecto-sp6_S_contig86.17718.1 vs. uniprot
Match: G4YZ65_PHYSP (Protein HGH1 homolog n=17 Tax=Phytophthora TaxID=4783 RepID=G4YZ65_PHYSP)

HSP 1 Score: 135 bits (340), Expect = 9.900e-31
Identity = 117/397 (29.47%), Postives = 186/397 (46.85%), Query Frame = 1
Query:  166 IEETVPFLRDPRPEIRQAAAATAVAASATKEGV---ALLHKCGAVKWLCRISGDVGTIGKDAVSCLVNVSAEETSVAALEDMCKAGIVNRMMEAVSDEQCLPFMRDLCLQLLANVTRVQVGATKLA---QVGVAGGALREGQYIRRLARWLAKHPADNGLPYPVLVGGSRDDARVVDRRAALRDTQPDXXXXXXXXGKGATQKRERKGEEVLD-QWQHCASVLCNAARIPEGRRALRRPDPLVALT-EVLPQLASANPVRRWGIAGCVRNCCFEELDHPWLLHEVKVVPHLLMRLADDKDEYDFEEKVILDPRVWRKEQEEGSSEDSPAAPRRREPVQCIKRDIVEALLQLCAILESRQSLRKCGVYFVIREMDKSEPDAEISQVCYNLVNFLQRDE 1332
            +EE V FL  PRPE+R++A++  +  +A+ +G+     L K   V+ LCR+  D+  I +DA+  L+N++A      A E   K  ++NR+M  V DE+    + D  + LLANVT    GA  L    +    G      + IR+L     +     G P P  V  S                                      GE   D ++Q+ A++L N +++ +GR  L +     +L   +LPQL S N VRR G+   ++N CF+  +H +L  ++ V  H+++ LA   +E D ++K+ ++P V+           S    ++RE  + ++   V+ LL LC     R+ LR+  VY +IR     EPD EI    Y LV+FL RDE
Sbjct:   13 MEELVSFLSHPRPELRKSASSLLINMTASDQGMFQLLQLKKFDVVQALCRVVSDMRPIAEDAIKALINLTAANPG--ACERALKYDLLNRVMTQVEDEEWR--LTDYSMMLLANVTTTPEGAKALLGYDEKSTHGTIAVRERKIRKLTNSFLE-----GEPEPDGVDSS-------------------------------------SGEPKWDDEYQYVANILANISQLEQGRDFLLKMRQSTSLAGALLPQLKSPNVVRRRGVTAALKNLCFDTDNHFYLYDQLDVPTHMMVLLAGP-EELDEDDKIGMNPVVY-----------SQGDKKKREHDRLVRLAAVDCLLLLCTTRNGRKELRRKKVYPIIRNAHLEEPDEEIGDQIYKLVDFLIRDE 351          
BLAST of mRNA_Ecto-sp6_S_contig86.17718.1 vs. uniprot
Match: A0A5D6XXP2_9STRA (Protein HGH1 homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXP2_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.790e-30
Identity = 120/435 (27.59%), Postives = 203/435 (46.67%), Query Frame = 1
Query:  157 RELIEETVPFLRDPRPEIRQAAAATAVAASATKEGV---ALLHKCGAVKWLCRISGDVGTIGKDAVSCLVNVSAEETSVAALEDMCKAGIVNRMMEAVSDEQCLPFMRDLCLQLLANVTRVQVGATKLAQVGVAGG------ALREGQYIRRLARWLAKHPADNGLPYPVLVGGSRDDARVVDRRAALRDTQPDXXXXXXXXGKGATQKRERKGEEVLDQWQHCASVLCNAARIPEGRR-ALRRPDPLVALTEVLPQLASANPVRRWGIAGCVRNCCFEELDHPWLLHEVKVVPHLLMRLADDKDEYDFEEKVILDPRVWRKEQEEGSSEDSPAAPRRREPVQCIKRDIVEALLQLCAILESRQSLRKCGVYFVIREMDKSEPDAEISQVCYNLVNFLQRDEQDKQGRIDYLKSLADSEGKEAAGSAGEDPATTE 1431
            R  +EE V FL  PRPE+R++A++  +  +A+ +G+     L K   V+ LCR+  D+  I +DA+  L+N++A   + AA E      ++NR+M  + D+     ++D  + LLANVT    GA  L  +G  G       ALRE +     + +L   P   G+                   A   D + D                        D++Q+ A++L N +++ +GR   L+       + E++PQL S N VRR GIA  VRN CF+  +H + L++   VP  +  L    + +D +++  + P ++R   +           ++RE  + ++   V+ LL LC     R  LR+  VY V+R     EPD E+    Y LV+FL RDE+ ++   + +++ A ++  +A G    +  T E
Sbjct:   12 RTSVEELVGFLSHPRPELRKSASSLLINMTASDQGMHQLLQLQKLDVVQALCRVVSDMRPIAEDAIKALINLTA--ANPAAAERALTFDLLNRVMTQIEDDDWR--LKDYSMMLLANVTTTPEGARAL--MGYDGRTDDALLALREKKMRTLTSLFLESEPEPEGVD------------------ADTGDAKWD------------------------DEYQYVANILANISQLEQGRDFLLKNRGGTTLVAELVPQLRSPNVVRRRGIAAAVRNLCFDTDNH-FFLYDQLDVPSKMSYLLAGPEPFDADDRAGMHPSLYRLGDK-----------KKREQDKQVRLAAVDCLLLLCTTRNGRNDLRRKKVYPVVRNAHLVEPDEEVGDQIYKLVDFLIRDEEGEEPDWNDVRAKAFADDADAVGGEAAESVTAE 386          
BLAST of mRNA_Ecto-sp6_S_contig86.17718.1 vs. uniprot
Match: A0A3M6VFC6_9STRA (Protein HGH1 homolog n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VFC6_9STRA)

HSP 1 Score: 134 bits (336), Expect = 3.010e-30
Identity = 117/399 (29.32%), Postives = 188/399 (47.12%), Query Frame = 1
Query:  166 IEETVPFLRDPRPEIRQAAAATAVAASATKEGV---ALLHKCGAVKWLCRISGDVGTIGKDAVSCLVNVSAEETSVAALEDMCKAGIVNRMMEAVSDEQCLPFMRDLCLQLLANVTRVQVGATKLA----QVGVAGGALREGQYIRRLARWLAKHPADNGLPYPVLVGGSRDDARVVDRRAALRDTQPDXXXXXXXXGKGATQKRERKGEEVLD-QWQHCASVLCNAARIPEGRRALRRPDPLVALT-EVLPQLASANPVRRWGIAGCVRNCCFEELDHPWLLHEVKVVPHLLMRLADDKDEYDFEEKVILDPRVWRKEQEEGSSEDSPAAPRRREPVQCIKRDIVEALLQLCAILESRQSLRKCGVYFVIREMDKSEPDAEISQVCYNLVNFLQRDEQ 1335
            +EE V FL  PRPE+R+AA++  +  +A+ +G+     L K   V+ LCRI  D+  I +DA+  L+N++A   +  A E   K  ++NR+M  V D++    + D  + LLANVT    G   L     +   A  ALRE +     + +L   P  +G+                                       AT      GE   D ++Q+ A++L N +++ +GR  L +     +L   +LPQL S N VRR GI   ++N CF+  +H +L  ++ +  H+++ LA   +E D ++K+ ++P V+           S    ++RE  + ++   V+ LL LC     R  LR+   Y +IR     EPD EI    Y LV+FL RDE+
Sbjct:   13 VEELVSFLSHPRPELRKAASSLLINMTASDQGMFQLLQLKKFDVVQALCRIVSDMRPIAEDAIKALINLTA--ANQVACERALKFDLLNRVMAQVEDDEW--HLTDYSMMLLANVTTTIEGTKALLGYDDKSTDAAIALREKKIRTLTSSFLEGKPEPDGVD-------------------------------------SAT------GEPTWDDEYQYVANILANISQLEQGRDFLLKMRQSTSLAGALLPQLKSPNVVRRRGITAALKNLCFDSDNHFYLCDQLDIPTHMMVLLAGP-EELDEDDKMGMNPVVY-----------SQGNKKKREHDRLVRLAAVDCLLLLCTTRTGRNELRRKKAYPIIRNAHLEEPDEEIGDQIYKLVDFLIRDEE 352          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig86.17718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1I7_ECTSI0.000e+095.56Protein HGH1 homolog n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YVT2_9STRA5.810e-6641.07DUF383 domain-containing protein n=1 Tax=Tribonema... [more]
W4FY03_9STRA5.460e-3531.80Protein HGH1 homolog n=7 Tax=Aphanomyces astaci Ta... [more]
A0A8K1CI53_PYTOL6.930e-3229.81Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2P4WXK1_9STRA1.420e-3129.32Protein HGH1 homolog (Fragment) n=1 Tax=Phytophtho... [more]
K3WKR7_GLOUD3.700e-3128.12Protein HGH1 homolog n=1 Tax=Globisporangium ultim... [more]
A0A662XPP2_9STRA9.250e-3130.33Protein HGH1 homolog n=2 Tax=Nothophytophthora sp.... [more]
G4YZ65_PHYSP9.900e-3129.47Protein HGH1 homolog n=17 Tax=Phytophthora TaxID=4... [more]
A0A5D6XXP2_9STRA1.790e-3027.59Protein HGH1 homolog n=1 Tax=Pythium brassicum Tax... [more]
A0A3M6VFC6_9STRA3.010e-3029.32Protein HGH1 homolog n=1 Tax=Peronospora effusa Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig86contigEcto-sp6_S_contig86:80720..90348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score990.3
Seed ortholog evalue3.6e-286
Seed eggNOG ortholog2880.D7G1I7
Preferred nameHGH1
Model size1692
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
Exons13
EggNOG free text desc.Domain of unknown function (DUF383)
EggNOG OGsKOG2973@1,KOG2973@2759
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-07_001180.1
Cds size1692
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig86.17718.1prot_Ecto-sp6_S_contig86.17718.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig86 80720..90348 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350486.467197-CDS-Ecto-sp6_S_contig86:80719..807781682350486.467197-CDS-Ecto-sp6_S_contig86:80719..80778Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 80720..80778 +
1682350486.4763885-CDS-Ecto-sp6_S_contig86:81691..818441682350486.4763885-CDS-Ecto-sp6_S_contig86:81691..81844Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 81692..81844 +
1682350486.48413-CDS-Ecto-sp6_S_contig86:82652..827631682350486.48413-CDS-Ecto-sp6_S_contig86:82652..82763Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 82653..82763 +
1682350486.4929368-CDS-Ecto-sp6_S_contig86:83285..833871682350486.4929368-CDS-Ecto-sp6_S_contig86:83285..83387Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 83286..83387 +
1682350486.5051064-CDS-Ecto-sp6_S_contig86:83737..838251682350486.5051064-CDS-Ecto-sp6_S_contig86:83737..83825Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 83738..83825 +
1682350486.5135326-CDS-Ecto-sp6_S_contig86:84953..851031682350486.5135326-CDS-Ecto-sp6_S_contig86:84953..85103Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 84954..85103 +
1682350486.5220551-CDS-Ecto-sp6_S_contig86:85826..860051682350486.5220551-CDS-Ecto-sp6_S_contig86:85826..86005Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 85827..86005 +
1682350486.5308392-CDS-Ecto-sp6_S_contig86:87020..870931682350486.5308392-CDS-Ecto-sp6_S_contig86:87020..87093Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 87021..87093 +
1682350486.54034-CDS-Ecto-sp6_S_contig86:87671..878181682350486.54034-CDS-Ecto-sp6_S_contig86:87671..87818Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 87672..87818 +
1682350486.5493112-CDS-Ecto-sp6_S_contig86:88217..883461682350486.5493112-CDS-Ecto-sp6_S_contig86:88217..88346Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 88218..88346 +
1682350486.5588226-CDS-Ecto-sp6_S_contig86:88804..889061682350486.5588226-CDS-Ecto-sp6_S_contig86:88804..88906Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 88805..88906 +
1682350486.5682101-CDS-Ecto-sp6_S_contig86:89377..894761682350486.5682101-CDS-Ecto-sp6_S_contig86:89377..89476Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 89378..89476 +
1682350486.5775585-CDS-Ecto-sp6_S_contig86:90048..903481682350486.5775585-CDS-Ecto-sp6_S_contig86:90048..90348Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 90049..90348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig86.17718.1

>prot_Ecto-sp6_S_contig86.17718.1 ID=prot_Ecto-sp6_S_contig86.17718.1|Name=mRNA_Ecto-sp6_S_contig86.17718.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=564bp
ALSTCRSLPDLCALLSLDTRPMSTFEGATAGTKTTGEQTEGNHGEGNTGS
ITRELIEETVPFLRDPRPEIRQAAAATAVAASATKEGVALLHKCGAVKWL
CRISGDVGTIGKDAVSCLVNVSAEETSVAALEDMCKAGIVNRMMEAVSDE
QCLPFMRDLCLQLLANVTRVQVGATKLAQVGVAGGALREGQYIRRLARWL
AKHPADNGLPYPVLVGGSRDDARVVDRRAALRDTQPDDDDDEEEEGKGAT
QKRERKGEEVLDQWQHCASVLCNAARIPEGRRALRRPDPLVALTEVLPQL
ASANPVRRWGIAGCVRNCCFEELDHPWLLHEVKVVPHLLMRLADDKDEYD
FEEKVILDPRVWRKEQEEGSSEDSPAAPRRREPVQCIKRDIVEALLQLCA
ILESRQSLRKCGVYFVIREMDKSEPDAEISQVCYNLVNFLQRDEQDKQGR
IDYLKSLADSEGKEAAGSAGEDPATTEPSSEIEVMPPSTASPGSTADRTA
FLRDKLVVENGGGAAVEKKGGSGQGGGGAKEEEAVEEFVGEEGGDAMIEM
LSAFDDDSGDDET*
back to top

mRNA from alignment at Ecto-sp6_S_contig86:80720..90348+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig86.17718.1 ID=mRNA_Ecto-sp6_S_contig86.17718.1|Name=mRNA_Ecto-sp6_S_contig86.17718.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=9629bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:80720..90348+ (Ectocarpus species6 EcLAC_371)
GCACTCAGCACTTGCCGGTCTCTGCCTGACCTGTGCGCACTACTTTCACT GGACACAAGGTGTGATTGAGCTGCTTGTCGTCCACGAGTCATTCTCGCAT CGAGTAGGGACTTTGTCTCAGCAGCAGCTGAAGCGTAGTGCACGGACTCG TGCCGCGCCCCGCAAACCACACAACTTCTCACCCTACACACTGGCGTTGA TGTTTTGCCCAGTTGCTTGCTCCCACCGATGTGTTCCTTGCGTCCAGAGC TTGTACGTGTATCGAAGTCATCAACGGGTGGAGGTTGAGTGCGTGTTGAT GCTCGCAGAGAGCTAGAGCATGCGTTTCCATGGTGCATACCTACGCTCTA CGCCCTGACACATGCGGCGGAATTATTTCAAGTTTGAATTTGGTGGCGAT CGGCGATCGTCAATCTACACAGCTAGGTTGTTTATACCAGCTCAGGGTAT ATACCCAACACTACGGGTGCATCATAAACGACGACTTCTCAAGTCCCTAC ACCAACTGCTCGATTTAATTATATGTATTGAGCCGGTTGCGACTGCATGT GGGTGTGCCGGGTGTCCTCTCGCCTCTCGCACATGCGGCATGGTGGCAGC GGCAGCGGGGCAAGTTTAGCAGGAACAGCTAGAAGGCGACCGATGGGAGT TGTGTGCAACACAGCAGTTTACATTGAAAGTTTATAGTAGCTGGTCTTCA GTAATTAAAAACTTCGAAGTAACAATTTCCATTTCAGGGTGCCTAGGCAT CATGCCTCAAAGGCTTTTATGTCCCGGCCTTGGCTTCAGGGAGACATAAA AGGGGCAAGCTACGAATGCGTTGGGTTTTTTTTTTAGCTCGAGTTCTCTG GACAAGGCTACTGGTGCGCGACTGCTGCACGTCCGCAGCGTCGTGTGCCT CGGAAAACTTCAATCAGTAAAGCACTTTCTGCTGCGCTTCGTTGCATGCG TGGTTGCTGTTGGTTGGCCCAGGCCAATGTCGACTTTCGAAGGTGCAACA GCAGGCACCAAGACAACGGGAGAGCAGACAGAAGGCAATCATGGCGAGGG CAACACTGGCAGCATCACTCGCGAGCTGATCGAAGAAACGGTGCCATTCT TGCGCGACCCTCGACCAGAGATTCGGTAAGCCCCCCCCCACCCCCCGCGT ACCAGCTTGGCTCGGGAAAATCCAAGGACCTCGGCGCCATGCTAGCAGGT GGCCAGCTGCTCCAAAGTCCAAATAACACGTTAAATCTGTAATTTCCGTA CAACCAAGGGGCCCTCCATGTGGAAACCGTGGAACACCCCACCCCCCCAA CCCCCCACCCCCCGGGCCAAGATTGACACGCAATACAGGGGGTTTAGGCA GCACGCTTGTAGCATTCTATTGCATAGGATTTAGTGTGTCCATAGTAAAA CCGATATACTCTTCATTGAATAGACTTTCGTGCCGCATTCTATAACCCAT AAAATTCTCTTCATTTGTAGGCTTCGTGTCGTCATACTATTTCCTACACC ATACACTAGACCTCGCGACCAAGATCGACGCGCATTCTTAAGGTGTTTCC ATCATTTCCACTAGCTCTGTGTGGGATCCCGCGCGCGCGCGCGCTGAAAT ATGCACCCGAAAATATCAAAACCCCGGGGATTTTGTCAAAATGTCCCCGC CGGGGGACATGTAAGGCCCATTCCCCCCGCCGGGACCAAGATTGACACGT AGCCCAGGGGTGTTCCGACGTTTCCAGATGGAGGGCCCCTTGCTATAACT GCTGTTCCCCTCGACAATTCTCCCCCCCCCCTTCGCCAATGAAGCGCAGC ACCGCTACAACCTCCTTGGGAAAAACGCCGAAGCCGCCGTTGATTTCAAT CTCGACCCCCGTTCTTGCATCGCTACCTCTGGAAAAATAAATGCCTCTAC AACGACGTGGAACACCGCGACGTGGAACACCAGGCAAGCCGCGGCAGCTA CAGCTGTAGCGGCATCCGCCACCAAGGAGGGCGTGGCGCTCCTGCACAAG TGCGGTGCCGTGAAGTGGTTGTGCCGCATTTCGGGGGACGTGGGGTGAGT GCTTATCGTCTTGCTTCCAGTCCGGTCGACCATTTTTATTCAGGGCCGAA AAAATGCGGGGCAACTAATTAACGCGTTTGATGTCTGGCGTGTTGGCTGC GTGCTGAGGAAACAACTACCGCCGTTGGGGAGTAGTGTTGTTGGCGAACA TGTTTTTTTTTCTCGCTCTATTTTTGGCAAGGATATACATACCGGAGAAT GTCGAATGCAGAAGTCGATCTCTTGTTTTTCTCGATGTTTTCTGGTGTGT GCTTGGTGGGATTTCGAAAACGCCTCTTTTCCCGATTGCTTCGGTCTGTG CAACGAGCAAGAACGTCGTTGGAAGTGGATGTGGGAGCAATGAACACTGG TGTCCATCCGGACACGTACGCGACAACACGAAAGTAGAAGTTGAACAACC ACGACTAATTTGCCCAACCACAGGATGAGCGAGAACAAAAATCAAAATGT AGGTCGGTGGCGATTTTTTTGTGTGTTGATGTTGTGCTTTCCGGCGTTCG TTCTTTTTTTTCACAGAACCATCGGCAAGGACGCGGTATCATGTTTGGTC AACGTGAGCGCGGAGGAGACTTCTGTGGCTGCACTCGAGGACATGTGCAA GGCTGGCATCGTTAACAGGTACGATGGACAATAGTATTTGTGTGGGAAAT ACCCGCAGACTTTTTTGCGATAAACAAGACCATGTATCAATACCAAAGCA CTATCCTCTTTGAGCGTTAATCGTTTCTGCGAGGGTGAAGTTGTTCCGTG TCTATGGTCATTTCTGGGCGCTTTGTTGTTGCCTCCCTTGGACGTTCGAA TTGTTCCAACGTTCCAACTGCCAATAGTTAGGCTATACCACCTGTTCAGC AGCAGCCGAAAGGGCAACATCGACAATAACACCACCAACAACAACAACAA CAACAACAATTGCCGTGCCTTTTTCTTCTTCCGGTTGACTTATTTTGCGT AATTGTCCGTGATCCCAGGATGATGGAGGCAGTGTCGGACGAGCAGTGTC TACCCTTCATGCGCGACTTGTGTCTCCAGCTGCTCGCCAACGTGACGCGT GTGCAGGTAATACTCAAGCGCCCCGCATGCGGTATTTCGCCTTTTGTGTG CTGAACTCGTCCAGCTGCGAATCGTGGTGCGCTCATCAAAAACTGGTTTT GAAGTTGCCGATAACAACGCACCGTGTGTCGTCTGCTGGGACAACGGGCA ACTGGTCCGGCGTTTGCCGAAGTTGCAGGCGAGCTTTCCAGGCAACGGCA TGATGACTATTCCCTCCGGCAGTCTGTGTCGCGAGGGCGAGTTTGAGATA GGACCCTATTTCCTATCGTGTGTGACACGCACTTTCACGCCCCTGGTTTC TCAGCGTTTTTTTTTACGTACTCTGGTATCATTCTGCTGCGCCTCCTCCT GTCACTGCCGGTTCTCTGGTTTCTTGCCAATTGGAGCAGAGCCTGGTCCG TCATGAACCCGTACGGTTGAACCGATCTGCGTACCCGTAGTTTTTTGTTG GAAAGCGAGCTCTACCCACCACCAGACCGAAGTCCCCCGGCGACGGCACG ACCATGAACAGAGGTGCTGGCCAATATGTGCCCACATGCGCCTGCCGTGA GATGCGCAAGTTCGAGCGGCTCGATCCTCCTCCCTGGGACCGTCTTCCCA AAACACGCAAAGCCAGGTTGTTTGAACGTGTTTACTTTGAAGTGTCGTAC GGAGATGATCGATTCCCCCAAGGTGCGGGCCGGGGGGGTTGCACGACTGT TGCGTTTCGTCGGTAATTCGGGTTTGAGGTTGCGTGTTAGGCGCTCGCTG GGAGTGAGCGCACGACGAACTCATTTTCGTGATTGTGCGGGTGGCGTGTG GCTCTTTTCCACCCGACAAGGTCGCTTGCTGGGAACAATGGTTTCCGGGG GAAACCAAAAGAAAGCATCATTCCGGCGCCTTACGACGCCTGTTCTTGGT TCCGTTTCTACTGCACTCCCTAGAACATACCTTCAATATTTTTCTGTATT CCACTGTGGGGTGTCACAACTTCAACTTTCGGTTGTCTTCCTCTTTACCT TGAAGGAATTAGAAAAGGAACATGCACTTTGTACCACGTGCGATACATTA GGAGACTATTTCAGGAAGCATGGAGCGCCTGCTGTTCTTCTAATTTCAGT GAATCCTGTCGTGGCGCGGTGACACTTATACCAGGTCGGAGCGACGAAGT TGGCGCAGGTCGGCGTCGCGGGCGGCGCGCTGCGGGAAGGCCAGTACATC AGGAGGCTGGCGCGGTGGCTTGCGAAGCATCCGGCCGATAACGGGTTGCC CTACCCCGTGCTGGTTGGCGGCAGTCGAGATGACGTGAGAATTTCTTGCT CTTGCTTGTTTGCATTCTACATGCCCTGTCGATTCTCTTGGTTGCAATTT GTCAGCTGTGTCGCTTGTTTGGAGTTGATGCGACGTGTGAGCGAAATCGT CATTTGCATGGAATTTGTTTGGGGGGGGGTGCGGTTTGTTGGCGATGTCT AGTCGGGGCTCGTTTTCTCGGGCATGTGGTTTCACAAACGTTTTTTTTTT AACATGTCTTCGTCACTAGATGATCACTTGCTTTGCTGATTGGCGGGGGG AAATTAGAGTTTAGACTGTTTTTGTTGACACTGCTACATGTCCAGGTCGA CAGTTGCTTGGATCTAGGTCGGCGGAGGAGTTGGCGGGACGGGGTAGGAT CGAGCATGGATTGAACGCACTCTACAGAACGCATTGGTTGTCATGTCCTC CGGTGGTGGTTGTGCCTGCGTTGGAGACAGCACGTCTTGCGCGATGCCAC GGAAGGCGGGATGATCGAAGAGATGGCGGGTAAACGCAGAGCGTTTATCT TGATCCATGTCCACCCTGCCCTCAGCCTGCCGTACGGTGCGGTCCTTCAA AATTTGATCCGGCTTTCGACCACCTGCGCTTTGACGCCGAGCGTATGACT GACGCCACTAGAAAACCCGCTTGCGGCGATGCTATTCACTTGCTGCAACA ACGCCACCACCAACCAACCGCTGCTGCTGCTGCTGCTGTCGCTGTGTGTC GGTCCAGGCTAGGGTGGTGGACAGGAGAGCGGCCCTCCGCGATACCCAAC CAGACGACGACGACGACGAGGAGGAGGAGGGAAAGGGGGCGACGCAGAAG AGAGAACGAAAGGGCGAGGAGGTGCTCGACCAATGGCAGCACTGCGCGAG TGTGCTTTGCAACGCTGCCAGGATCCCGGAGGGAAGGTGAGGTATTTTGG TCGGTTGCACACAGCAGGGTTTTCACAAGAATTAGGGGTGCTTCTTCCGC TCTCTTTGTTTGTTGGTTTCCCATAGCTAGTATTCGGGGGGTGTAATGCT TGGAATGTAAGACGACTGATTGGTGTGTTGTGTTGTAGTGTATGCGCCCG AAAGCGTTCTGACCTTAACCCAATACGTCGGCAATACCTGTCATCATGAT TCCTAGGGTACCTCGGTATTTTCTATCTTGATTCCTTCAGGGTACCTCGG TAATATAACTGCCTTGGTTCCTGGGGTGATAATCTGCCTCGATTCCTAGG GTTGAGGAACGAGTCTTCGATGACACTCGTTGATGTCCCACGCTCGTTCC ACCCGTATGGTGGATGCCGCTGTGTAGTTGTTCAGCTGGCATGCGAGATT GACACGCGCCCTTGTTTGCGTGGGGTCTAGCAACTTTTTGTCCGAATGGA GAGGAGGGAGGGAGGGAGAAAGAGAGAGAAAGAGAGAGAGAGAGAGAGAG AGAGAGTTTGGGGCAGTTTTTGCAGCCAGCGCTAGCCCAGCGAAAAAATG TGGCGTTGTGAATGGTACGTGTAGTTGCGCATCTCGCGAAGCGTCGATAT TTTCTCTCGTTATTGCTACATGGCACTTGCGCTCGTCTTTCTAGGACTTG CTCCTGAGCCTGCCGCGCTCGCATCGCGCTTTTTTTCTTTTTTTCTTCCC TGGACGAGGGCGAGATTCCCCCCAACATGTCCGTGCTCGACCTGGATAAC ATGTCGGAGGAAGTGTTGTGTTTAACAATCTCGCCAGGAAATTGTGCGCA CGGCGGACGACTGTACCCGCAAAGCTTAGCCACAAAGAGCAGGCTTGGCG AGCATAGAATGTGAAAATGTCCGGTCTTCTTATGCAGGTTGATAGCGCAT GTTTATTGCTGGGAGGCCCGTGGATCCGTCGCTGACAAGGGACCCCCACC CCCACCACCCCCCTTCCCCTTCCTTGCGTTGATTTTACTCTTCTTTGATA GACGAGCCTTGAGGCGACCGGATCCGCTCGTGGCGCTGACGGAGGTTCTG CCGCAGCTAGCTTCCGCCAATCCCGTGAGTGAAACAAGGACATAACGCTT CCGGCCTGTGTCAGCAGTAGTTGGTTCGGTGGTGACCGGCGTGGCTGCAG CGCGTCGTCAGAGAGAGGGCACACACGGCGAAACCAGGATCACCTGGTGC ATACGCTCAACTTTTGTACGCGCGCCGTTTTTTTTTTGCGTGCACGTGGA TAAAAGCCTTTTTCAAGAGGCCATGCGCTGTTGCATGTTTCGTTCTAACC GTGAGCGTGTTGTTTGTTCGTGGTCGTCGTCGTGGTCGTCGGTGCGAGTG CTGTTGCTGTTGCCGCTGGCAGTGTTTGCAGTGGTGGTGGTGAGCTCAGG TACATGTGTTGTATACATGCCGTCGATCGTTTCGCGCTGTGTTTGCTGCA TTCGTTTTGGCGGACCGGACCTCGTCCCACCAGTTTCGCATCGATCTCAT TTCACCACCACCACGACCACCAAGTCTACAGCAGTCATCCCCAAGCACCG TCCTCCTGCTGTGTCGATCGGGTTGCTTCCATCGGACAGTCTATGAGGTC GTGCTGTCTCGCCTCAACGTGTGAAGCCGTTACGTGTACGGATGCATCTC AGGTGCGAAGATGGGGCATCGCCGGGTGCGTCCGAAACTGCTGCTTCGAG GAGCTGGACCACCCGTGGCTGCTGCACGAGGTGAAGGTTGTGCCGCATCT GCTCATGAGGCTCGCCGACGACAAGGACGAGTACGACTTCGAAGAAAAGG TTAGGAGGAGGAGCCGATATGTCGTGTCCCATTCTGCGGCTCAAAGGGAC GTAGCCGTCTCTGCTGTCTGTCTGTCTCTGTCTCTGTCTCTGTCTCTCTA CTCTCCCTTTCTCCTTCTCTCTATTCTGCCTCCCTCTCTCTCGGGTGTGT ACCTCTCTGTCTGTCTGTCTGTCTCTCTCTCGCTCTCTCTCTCCCTCATA CCCCGGACGTTTATCCCCCTCTGCCTGCCTTTAACTTGTCTTGACAACCC TCTGGTCTACCTCTCTGTCTGTCTGTCTGTCTGTCTCTCTCTCCCTCATA CCCCGAACGTTTATCCCCCTCTGCCTGCCTTTTAACTTGTCTTCACAACC CTCTGGTCTCGTGTTTACCATCATTTTACTGTCGTCGTATTTTGTCAGGT CATCCTCGACCCCCGAGTGTGGAGGAAAGAACAAGAAGAAGGTTCTTCTG AAGATTCCCCCGCAGCGCCGAGAAGACGAGAGCCCGTTCAGTGCATCAAG CGCGATATTGTCGAAGCCCTGCTTCAGGTAAAGCGAGGCTTTCCCTCACT TACGATCCGCTCGTTTCCCCCGCAAGGCTCGCTCCGTTGTGCCTCTGTCG TGAAACGAGCAGGAACAACGCGTCCTTGCTGGGGTGGGGTTGAAAGTCTT GGCGATGTTTGACCGTCACTTTTCTACTGTCGTCTGCTCGAGCGATGACC CCCCCTGTCCGTGCGCCCTGCCCTCGTTCCACCCCCTGACCTTGGCTGCA CGCGGACGCCCTTAGCCGCTTGACTCTTGTGGCGGCAAGGGGCTCATGCC CTTTAGGCCAGCCCCCGAAACGACGAACAAGCCGTGCTGTATGTAGATCT CGACCCAGCTATGAAGGACTCCCTTTGGTCATTTGTGTTTTCGAGTGGCA TCGCCTCCTCCGTTGGGGATTGCCCTTCTCCTTGACCGTGCTGCCCTTGT ATTTTTCTTTTTGCGACCACCCGAACCTGTTGCAGCTGTGCGCCATACTA GAGTCCCGGCAGTCGCTGCGAAAATGCGGGGTCTATTTCGTGATTCGGGA GATGGACAAGTCGGAGCCCGACGCGGAGATATCGCAGGTGACGGAGCAGC CGCGACGTTCGTTTGTGCAGGGAAAATTCCGACCCGGGAGAGGGCAGCAA GGACACACGCACGGCTTTTGCCTAGTATCGATCACGCTGTTTTTTTCGTG CGGTAATTTGGGCGAAAGGGGTGTTCATGTGAAGGCTTCCACCCTGCAAC ATCGTTTTGTCCGCCTTGCCTTATTTCGCTTGAAAACCATGGAGTTTCTT GCGGCGGAGGCAAAATGAGCCACCACGAAAAAATCATCGTGGTCACTACT GTCAGACGTCTTGCCGACGCTCCCTCCTGTTTGCGTGCCTATTTCGTGTG TTTATCGTTTTGGATGTGGTGACCGTGTTTCCGCCCCAGTTTGAGGGATA AGCTCGATTTTCACACCGGTTTTGAGACCTTGCGACCTTGTCTAGCGGGG TTGATCGCTTTTCATCCCCCACCACCACCATCTCGCGCGATGGCCGAACG CCGCGTAGGTGTGCTACAACCTCGTCAACTTTCTTCAGCGGGACGAGCAA GACAAGCAGGGCCGCATCGACTACCTCAAGAGCCTCGCAGACAGCGAGGG CAAGGAGGTACCACAATTTGCGCAGACGGTATACATCACGCACCACCCCT TTCAGAACCTCTTGTTCCGGCCGAGGCTCGTTTTCTTTTTTTGTCTATGG GGTACAACAACAGACTATATAGGTTCTAGTGTCGGCTTCTTGACGAAGCA CCTGTTCCGAATGGCGGCCATGATTTTGGATTTTCTTTTTAGGCTCAAGT TATTAACTATTATACTGCGAAGTTCCTAGGTGGTAGCGCGTTCTGTTTAC CTCCCTCACGTTTTTTCATGACAGCTTTTTTTTCACAAAACGCAACGCAC TCGGGACCCTTTTTTTTTTTTTCTTTTGCACTCGGGACCTAGACAAGTCG ACGGTTGTTGCTGAATCGCCGAGTCGATGGATGGAGAACATGCCGGCAGA GAAGACCTAACTAATAATCGGAACGGTGATGGATTCGGAGATGATCGAAA ACTTGATGGGTTCCGATGCCCGACCTTTCAATTTATCAATTTTATGTCGC TGTACTTGTATGCCTATCAACAATCCCGTGCATGTGAAATGTTTTTTTTT TTTTTGCGACGACGTTGTCTTGATCGTAGGCGGCAGGGTCGGCGGGAGAG GACCCTGCAACGACAGAGCCTTCCTCGGAGATTGAAGTGATGCCCCCGTC TACCGCATCCCCGGGGTCCACAGCCGACAGGACGGCATTCCTACGCGACA AGCTTGTGGTGGAGAACGGTGGCGGCGCGGCTGTCGAGAAGAAGGGCGGC AGTGGGCAGGGCGGGGGTGGAGCGAAGGAGGAGGAGGCGGTGGAAGAGTT TGTTGGGGAAGAGGGGGGCGACGCAATGATCGAGATGTTGTCGGCATTCG ACGACGATTCCGGGGACGACGAGACGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig86:80720..90348+

>mRNA_Ecto-sp6_S_contig86.17718.1 ID=mRNA_Ecto-sp6_S_contig86.17718.1|Name=mRNA_Ecto-sp6_S_contig86.17718.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1692bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:80720..90348+ (Ectocarpus species6 EcLAC_371)
GCACTCAGCACTTGCCGGTCTCTGCCTGACCTGTGCGCACTACTTTCACT
GGACACAAGGCCAATGTCGACTTTCGAAGGTGCAACAGCAGGCACCAAGA
CAACGGGAGAGCAGACAGAAGGCAATCATGGCGAGGGCAACACTGGCAGC
ATCACTCGCGAGCTGATCGAAGAAACGGTGCCATTCTTGCGCGACCCTCG
ACCAGAGATTCGGCAAGCCGCGGCAGCTACAGCTGTAGCGGCATCCGCCA
CCAAGGAGGGCGTGGCGCTCCTGCACAAGTGCGGTGCCGTGAAGTGGTTG
TGCCGCATTTCGGGGGACGTGGGAACCATCGGCAAGGACGCGGTATCATG
TTTGGTCAACGTGAGCGCGGAGGAGACTTCTGTGGCTGCACTCGAGGACA
TGTGCAAGGCTGGCATCGTTAACAGGATGATGGAGGCAGTGTCGGACGAG
CAGTGTCTACCCTTCATGCGCGACTTGTGTCTCCAGCTGCTCGCCAACGT
GACGCGTGTGCAGGTCGGAGCGACGAAGTTGGCGCAGGTCGGCGTCGCGG
GCGGCGCGCTGCGGGAAGGCCAGTACATCAGGAGGCTGGCGCGGTGGCTT
GCGAAGCATCCGGCCGATAACGGGTTGCCCTACCCCGTGCTGGTTGGCGG
CAGTCGAGATGACGCTAGGGTGGTGGACAGGAGAGCGGCCCTCCGCGATA
CCCAACCAGACGACGACGACGACGAGGAGGAGGAGGGAAAGGGGGCGACG
CAGAAGAGAGAACGAAAGGGCGAGGAGGTGCTCGACCAATGGCAGCACTG
CGCGAGTGTGCTTTGCAACGCTGCCAGGATCCCGGAGGGAAGACGAGCCT
TGAGGCGACCGGATCCGCTCGTGGCGCTGACGGAGGTTCTGCCGCAGCTA
GCTTCCGCCAATCCCGTGCGAAGATGGGGCATCGCCGGGTGCGTCCGAAA
CTGCTGCTTCGAGGAGCTGGACCACCCGTGGCTGCTGCACGAGGTGAAGG
TTGTGCCGCATCTGCTCATGAGGCTCGCCGACGACAAGGACGAGTACGAC
TTCGAAGAAAAGGTCATCCTCGACCCCCGAGTGTGGAGGAAAGAACAAGA
AGAAGGTTCTTCTGAAGATTCCCCCGCAGCGCCGAGAAGACGAGAGCCCG
TTCAGTGCATCAAGCGCGATATTGTCGAAGCCCTGCTTCAGCTGTGCGCC
ATACTAGAGTCCCGGCAGTCGCTGCGAAAATGCGGGGTCTATTTCGTGAT
TCGGGAGATGGACAAGTCGGAGCCCGACGCGGAGATATCGCAGGTGTGCT
ACAACCTCGTCAACTTTCTTCAGCGGGACGAGCAAGACAAGCAGGGCCGC
ATCGACTACCTCAAGAGCCTCGCAGACAGCGAGGGCAAGGAGGCGGCAGG
GTCGGCGGGAGAGGACCCTGCAACGACAGAGCCTTCCTCGGAGATTGAAG
TGATGCCCCCGTCTACCGCATCCCCGGGGTCCACAGCCGACAGGACGGCA
TTCCTACGCGACAAGCTTGTGGTGGAGAACGGTGGCGGCGCGGCTGTCGA
GAAGAAGGGCGGCAGTGGGCAGGGCGGGGGTGGAGCGAAGGAGGAGGAGG
CGGTGGAAGAGTTTGTTGGGGAAGAGGGGGGCGACGCAATGATCGAGATG
TTGTCGGCATTCGACGACGATTCCGGGGACGACGAGACGTGA
back to top