mRNA_Ecto-sp6_S_contig86.17716.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig86.17716.1
Unique NamemRNA_Ecto-sp6_S_contig86.17716.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig86.17716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig86contigEcto-sp6_S_contig86:68341..69594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size239
Hectar predicted targeting categoryother localisation
Exons2
Cds size237
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350485.4306839-CDS-Ecto-sp6_S_contig86:68341..684201682350485.4306839-CDS-Ecto-sp6_S_contig86:68341..68420Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 68342..68420 -
1682350485.4399385-CDS-Ecto-sp6_S_contig86:69436..695941682350485.4399385-CDS-Ecto-sp6_S_contig86:69436..69594Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 69437..69594 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig86.17716.1prot_Ecto-sp6_S_contig86.17716.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig86 68342..69594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig86.17716.1

>prot_Ecto-sp6_S_contig86.17716.1 ID=prot_Ecto-sp6_S_contig86.17716.1|Name=mRNA_Ecto-sp6_S_contig86.17716.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=79bp
ASDRVDQILRCVREGGSHALCFGSWPTTMEGSGHRPAQYGCPTRCISIDH
INNAVLGCASLPHARPGVQVHRRLHCDLL
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mRNA from alignment at Ecto-sp6_S_contig86:68341..69594-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig86.17716.1 ID=mRNA_Ecto-sp6_S_contig86.17716.1|Name=mRNA_Ecto-sp6_S_contig86.17716.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1254bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:68341..69594- (Ectocarpus species6 EcLAC_371)
GCTTCAGACCGGGTTGATCAGATTCTTCGATGCGTTCGCGAAGGTGGGAG
TCATGCTCTGTGCTTTGGTTCTTGGCCGACAACTATGGAAGGTTCAGGAC
ATCGGCCAGCTCAGTACGGATGCCCAACACGTTGCATTTCTATCGATCAT
ATCAACAAGTAAGAACACGAGATTTTCAAAATCTCGACCCGCGGGCGCAT
GGATGCATACACACTTTTTCCTTCACCGAATACAACAGGCGGTGATTGCA
TCTAGGATTTCCCGCACGAATGACACACTATAGCCCGCTCCGCCTATCGA
ACTCCCATGGGGCAAGGAGATAGAACCGCAACGTAGCGTTCAACGTTCAA
CAGCACCATATGGCCCCCATGCATGTGCAGTCTCCATGGGGAACCTGTCG
GCTCATAGAGAGCAAGTGTCTGCTGCAAGTATTTTCTATTCCAATGACAT
ATGTTTAAACAAGCGAGGATTAGCTGTGTTCAGGATCGATAAGAATTTGC
ATAGTAAACGTATCTGTGTTGGACGGGTGTGATGAGCGACAAGTGAGAGT
GCTAATTCGCCACCCGCATGCACTGCTACTGCTAAAAGCTCCTTTGGCTG
AGCATACCTTGCTTTGAAGATTTGTAGCAGATACCCGTTGGTGCGACTGT
TTCGTGTCATTTCTGAGCATTGGTACCCCGGGGCATGTTTCGCGCCGTAC
TATACCCGGGAAGCGTTCGTCGAAACCCGTGCACCTGCCGAGTTCCTCGA
TGGATTGATATTCTCAGCACTCTGGGTTGCTTTACCTCCAGACCAGCGCT
CATATCGTGCAGCGCCAGAATGGCCAAGACTGCGTGTAGCCTCACAGGCA
ATGACATTAGCCAACCAACAAGCTTCACACGAAATATCTTTTCTTGCGGT
TTTACCTTGAAAACGTTGTTCCTACTCATGCCTCAAGGTAGATGCCATGA
TCTCGTACGCGTGAGAAATGAGAGTAGAGCACCACATGATTTATGCGGGC
TAACAATACGTAAAGCTATAACCTCCCCCCCTGAACTAATAGTGCTGTCC
TAAGTCGATGGCGATTTTCGACCAAACAAGAAGAGTCGTTTCTGAACCCT
ACGCTGCATTGGTCATCCCTGAGTGATAACATTTTGCCCGCCCTCGGCTT
CTCCAACCTCCTAATCCACCTCAGCGCCGTTCTTGGTTGCGCTAGCTTGC
CCCATGCCCGACCTGGTGTTCAAGTACATCGCCGTCTTCACTGCGATCTT
CTCC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig86:68341..69594-

>mRNA_Ecto-sp6_S_contig86.17716.1 ID=mRNA_Ecto-sp6_S_contig86.17716.1|Name=mRNA_Ecto-sp6_S_contig86.17716.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:68341..69594- (Ectocarpus species6 EcLAC_371)
GCTTCAGACCGGGTTGATCAGATTCTTCGATGCGTTCGCGAAGGTGGGAG
TCATGCTCTGTGCTTTGGTTCTTGGCCGACAACTATGGAAGGTTCAGGAC
ATCGGCCAGCTCAGTACGGATGCCCAACACGTTGCATTTCTATCGATCAT
ATCAACAACGCCGTTCTTGGTTGCGCTAGCTTGCCCCATGCCCGACCTGG
TGTTCAAGTACATCGCCGTCTTCACTGCGATCTTCTC
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