mRNA_Ecto-sp6_S_contig86.17714.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig86.17714.1
Unique NamemRNA_Ecto-sp6_S_contig86.17714.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig86.17714.1 vs. uniprot
Match: D7FSN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSN8_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 1.920e-32
Identity = 91/164 (55.49%), Postives = 97/164 (59.15%), Query Frame = 1 
Query:   49 CCACDCVDADYTCGYNGYDCLDPSACSISSDEEDDGAPVXXXXXXXXXXXXXXXXXXXXXXLFKKGHLKPCACGEACACCEPSAPXXXXXXXXXX-AGVMSAPSVGKAYPEVHSSAAVXXXXXXAYEGPGDAQPPA-QAYPVPAATAAXXXXXXXVVDQYPAPA 534
            CC CDCVDA YTCG   YDCL+PSAC    D+  D  PV                      LFKKG LKPCACG++CACCEP  P  XXXXXXXX AG  SAPSV K YPEV+SSAAV      AYEGPG    P  QAYP  AATAA       V +QYPAPA
Sbjct:   87 CCECDCVDALYTCGVADYDCLNPSACGGDEDDXXD-VPVGAIVGGVIGGVLFLAAVIILAVLFKKGCLKPCACGDSCACCEPGPPATXXXXXXXXXAGGGSAPSVVKGYPEVYSSAAVAQLPPAAYEGPGSVPAPGVQAYPAAAATAAPPAYGGPVRNQYPAPA 249
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BLAST of mRNA_Ecto-sp6_S_contig86.17714.1 vs. uniprot
Match: A0A6H5JXP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXP2_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 4.430e-21
Identity = 52/75 (69.33%), Postives = 58/75 (77.33%), Query Frame = 3 
Query:  336 WCYVGAVSW*GVSRGALFRCSCASPPSCVRGSWRRSAPRS-SVPGACSNCRSSPVRGSSGRPVSRAGVSAGGCTV 557
            WC +GAVS  GVS G LFRC  A+ P CVRGSW+ SAPRS SVPG CSNC SS +RG S +PVSRA +SAGGCTV
Sbjct:   20 WCRIGAVSCQGVSPGVLFRCGRATSPPCVRGSWQHSAPRSPSVPGGCSNCGSSRIRGPSAQPVSRACMSAGGCTV 94
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BLAST of mRNA_Ecto-sp6_S_contig86.17714.1 vs. uniprot
Match: D7G1I9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I9_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 9.530e-11
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 2 
Query:   74 PTIPAAITDTTALILPRVVSAAMKKTMVRRWAPSLAV 184
            PTIPAAITDTTA ILPRVVSAAMKK MVRRWAPSLAV
Sbjct:    2 PTIPAAITDTTASILPRVVSAAMKKMMVRRWAPSLAV 38
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig86.17714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSN8_ECTSI1.920e-3255.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXP2_9PHAE4.430e-2169.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1I9_ECTSI9.530e-1194.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig86contigEcto-sp6_S_contig86:46125..51454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1735
Hectar predicted targeting categoryother localisation
Exons4
Cds size195
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig86.17714.1prot_Ecto-sp6_S_contig86.17714.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig86 50062..50256 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350486.265897-UTR-Ecto-sp6_S_contig86:46124..461711682350486.265897-UTR-Ecto-sp6_S_contig86:46124..46171Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig86 46125..46171 +
1682350486.2754147-UTR-Ecto-sp6_S_contig86:47754..478461682350486.2754147-UTR-Ecto-sp6_S_contig86:47754..47846Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig86 47755..47846 +
1682350486.2849662-UTR-Ecto-sp6_S_contig86:48956..489741682350486.2849662-UTR-Ecto-sp6_S_contig86:48956..48974Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig86 48957..48974 +
1682350486.2942688-UTR-Ecto-sp6_S_contig86:49876..500611682350486.2942688-UTR-Ecto-sp6_S_contig86:49876..50061Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig86 49877..50061 +
1682350486.3264976-UTR-Ecto-sp6_S_contig86:50256..514541682350486.3264976-UTR-Ecto-sp6_S_contig86:50256..51454Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig86 50257..51454 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350486.3150222-CDS-Ecto-sp6_S_contig86:50061..502561682350486.3150222-CDS-Ecto-sp6_S_contig86:50061..50256Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 50062..50256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig86.17714.1

>prot_Ecto-sp6_S_contig86.17714.1 ID=prot_Ecto-sp6_S_contig86.17714.1|Name=mRNA_Ecto-sp6_S_contig86.17714.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=65bp
MSAPSVGKAYPEVHSSAAVAPPPPPAYEGPGDAQPPAQAYPVPAATAAPP
PYEGPVVDQYPAPA*
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mRNA from alignment at Ecto-sp6_S_contig86:46125..51454+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig86.17714.1 ID=mRNA_Ecto-sp6_S_contig86.17714.1|Name=mRNA_Ecto-sp6_S_contig86.17714.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5330bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:46125..51454+ (Ectocarpus species6 EcLAC_371)
AGAGTACTGCGACGATTCATACATTTCGGACGGCTACTGCGATGGCGGTA
AGTAAGCCTTTGTGCACCTCCTATGTGAGAAACTGTGTGGGACGTTGCGG
CATTCCTTCTGATGATGCAATTCTCATTCCGGTGGCGAGATGTTGTGTGC
GACCTCGAGAGCATCGTAAGATTATGGTGGGTGGCCGCGCTGTAGTGGGC
ACATATGCCTCCGTTGTATTTTCTGTAGTGATTGTCCACCTTGCAACTTT
CCTGCTGTTCAAGCCGCCGGTAGCAGCCTGTTTTTTGTAGGTCTTGCCTC
AGATGCTTTTTACTTTGTACCTCGTTGAAGTCTTTTATGAGCTTCTTGTG
GTACTAGTTTTCCAGTCCCGGCTGTTCAGCGTACTTACGATTTCTGCGAC
ATTGGTGGGTACGCATCTCGGATCGCGTTGCCCCGAGGCGTGTTCCTGAT
CAAATAGGGTGACGCCCCCTAGACAAAAACCCATCCAACATCCAGCTTAC
CACAAACGCAGCTACGGTTCTGCCTTGAGGCTGTCGGCCAAAGAGTAGAC
TAAGGGTTCCCCAGGCGGGCGCATCACCCGGGGCTATAGAAATGTGCTTC
GAAGTTTTTCGCCATGAGGTTACGAGCCCGGTTCTAGAGAAGCTCTGCAC
ATCGCGCGAGAAATCCTTTGAATAGTTTGGCTGTATGAACAACACCAAGG
GTAATCAAGAAGCGTTGGACGGTTTGAGGATTGTCATGAAACAGCTGGCA
GGGGAACGTGCCAAGGTATTCGTGTCTCGCCACGTATCCCTCGGTTTGTT
CTCCGGCGAAGGCTGTTGAACGCCGTCGGCCGCCTTGAGCGCTGTCGGAC
AGCTGTGCCATGTGGTCGCTGGAATCCCCTGCCGTGTGTTGTCAACAGCA
ACCGCTTCTCGCTGTGAGTTTGATTGGTGTGGTAGCAAGCAACCGAAACG
CGGGTTGCGCCCTGCTGGCGACGGCCATCGAGCAGTTTCTCCGCTAGGCT
GATATGTGTGCCCTTTTTCGTCCCGGTTTGTCGCGTCTCCGACATTTGCT
CCTCGTTACCAGATGAAAACTCCGCGGAGTGCAATTGGGACGGGGGAGAG
TGAGTGCCAGCTTTCTGTTGCACCAAGATTTGGGGGAGATGAGCGTGGGA
CGTGGTGTGCTAGCCGGCACACGAGGCCTCTTTTTTGGCGGTGTCGCCTT
GTGCGATTAGTGGCACCCGTATTTTCTCGCTTGCTTGCTGTAGCCCGCAC
CGAAACCTTGGAAGAATCGGCGTGATCAGGCGGGTTGACAACTCTGCACA
CTCCACGGTGATCTAGGAAACGACGTGGAGGTCAATACCCGCCTCACCTG
TTTCGCGTGCATTCCATGCTCGCTAGTGTTCCCCGTTGGCTAGAAACTGC
CTCACGCGTCCCCCACGCCTACCTACGACCCAATTAAGTGGTAAGTATTT
CCGCGCCCGCTCAACTGCAGCCGAATCTAGCTGCTCTACTAGGTGAACAC
GAGGCTTATTAACGATAGGCGTTTGCGAGTGGCACCGCCTCCGCGACGCG
AACTATCTCACGTGTTTTGCCACCCTCCGTCCAACCGGGCGTCTTCTTTT
TTTTTGTTTCCACTCTTGCGGGATATCCAGCTGCTGTGCGTGCGACTGCG
TCGACGCCGACTATACCTGCGGCTATAACGGATACGACTGCCTTGATCCT
TCCGCGTGTAGTATCAGCAGCGGTGAGTTGACCTTGCGGGTGTTTTTTCG
CCTCTGGCGATGTGGCTCTGAGAAGACGAAGCATGCAGTAAAGCAACAGT
TCTTTCTGGTGAACCGGTCGTTCGCGGGTCCGAATTTCACGTTCACGTGT
GCGCATGCTCCCGTGTTTGACTTCTAGCCAGCGGTGGCGGCTGTCGAGGG
CAAACGTCGGATCCGCTCAAGGTATTTTGTGTGTTTTCTCATAAGGCTGC
ATGGTACCTGTCAATGTTTCAATACAGTGTTCGATGGGGATGGGGGTAGG
TCTCCTCCACGTGTGTCCGAGTTTTGTTGCTGTTGCTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGCTGGTGCTGGTGTTGCTGTGGTG
CCTGTGTATTGAGAATATGGCCTCTTCTCTTCTGTTGTGCCAGTCGTTAT
GGACTGCTGCCGGCGCCACGTGTTCCCGTGCATTGGCCACCACATTGCCG
AAATGCTGCAGCCCGAGGCGTATGTCGTGGTTTACGTAGACCGAGAAATC
CAGAGTGTATTGGCTGCTTCGGTCTAGACAGGTTGGAGGATGTGTCCGCA
GCCAGTGGGTCGTCCGTTGCGTTCACGCGACACCAGTAACGCGCGTTCGC
ATGTCATCCGTCCCAACCCTGCTCGGTCCCATTTTTTCGATGTTGGCATG
TGCGAACCTGCGCTGTGTCTGCGCCGTTTCCCAACTTTTGGCGACGACTA
TGGTGCTGTGCGCTCCGCCGACGCCGACGCCGGCTCCTTCTCCGACTGTG
AGGAGCTTTAAACTTTGGTGCACGTTCGCTCTCACGCAACGCGTTACCCG
AATAGGGGCGCGACGCCCACCGCCAGGGACCGGGGGGTATTCTATTATTT
CATTCATCCGCGGTTTGCGGCTTTGTCGTCGGCAGCAGTAAACTTTCCTG
GTATTGCAAGCGACTAGCCCCCATGCTGCATCACTTACGGGGCGTCTGGT
GACTGGTGACTATCTCACTGTGGCGTCGTTCCCTCCCTTACCGGTGCCTT
TTCTCCGGCCTCCTGTGCATCATCCGCGGCGGGACCCCGTCCATTGCCGA
CGATATACCGACGATACTGCCGACTTCAATAGATGAAGAAGACGATGGTG
GTGAGATTCTCTTGTCTTGGTGTGATCGGTGCAGCCCCGACCAAGCAGCG
CTTGACATGTCCTCATTGCAAGACCGCTCGTTCTGTACCCTTCCAATGTT
GCGCTTTGACTCGAGACCGCGGCGGTCTACGCTAGTAGCACCGTAGCACC
GGTTCCGGATGTTTTGTCCACAAGCCGCCTGAATGTTAATGTTGCTGCAT
TTTCCATTTGCCAAGACTGCCCTCAGCAAGAGGCTGTGATCGCGAGTTCA
TTCGAAAACAACTTCCTTTCTACTTATGCTGGACCTCGTTAATTTTTCCA
CCCCAAGTCGTCGAAGCTCTCGAACCGGAATTGGGCAGCACTAACCCCAG
CAGAATAGAAACAATGGAACACTTCTTGCAGCTTGGGTTCGCCTCAGAGA
CAAAGAGCAAGCTCTCCTGCTTCTGCGCGGGGCGTAGATCATAAACCCGA
CGGTGCCGAACGGTGCTCTCCCTTCTCCCCCCGTGGCGTATCCCAGCTGC
CTGCGGCGACCTGCGATGGGAATGCCAGGCGATGGCTCAGACGTTATTTA
CCGAAAGATATCGAAGATGGACTGAGTGATGCGATGATGTTCCTGATAAT
GCCGTGGAAAAAAATTGTGGGAGAACGAAAACCTGTGAGAGCAGTTCTAA
GCACGCGGATTGTCGTGGAACGTGGAGTGTTGCGCCCAGTTTGAGCTGGG
GCCGCCTTTGAATCCAATCAGATTGTGTTCGATACACCCGACAAAGGCGA
AATTATGTTTTTTCCCGTTTCTTCGCGCACCCCTGCGGATCGATACGAAA
ACCGTTGCCACCTTTCTTCTCGCTGCCACCCCGCTCTTGAATCATTGGCT
GTTTCTTTGTCTAAAACAACCCCGCCCTTTCCCGACGTGCACAATTAATC
AGCGCCGGTGGGCGCCATCGTTGGCGGTGTGATAGGCGCGCTGCTCTTGA
TCGTTGTCGTGATCGTCTTCGTGGTCTTGTTCAAGAAAGGTCACCTAAAG
CCTTGCGCATGCGGCGAAGCTTGCGCATGCTGCGAGCCCAGTGCTCCTGC
TGCAACTCCTGCTCCTGCTCCCGCCCCTGCTGGTGTTATGTCGGCGCCGT
CAGTTGGTAAGGCGTATCCCGAGGTGCACTCTTCCGCTGCAGTTGCGCCT
CCCCCCCCTCCTGCGTACGAGGGTCCTGGCGACGCTCAGCCCCCCGCTCA
AGCGTACCCGGTGCCTGCAGCAACTGCCGCTCCTCCCCCGTACGAGGGTC
CAGTGGTCGACCAGTATCCCGCGCCGGCGTAAGTGCAGGGGGTTGTACGG
TCTAGGTGTGGCGAGCGTTTACCTTCGTGTCTGTTGTATTCTGTTGGTTG
TTTTAGGTTGACCAGTGTATTTTTCCCAGCAAGCAGCCTCTTGTCAGCCG
AGTAGGTGATGTGTTGCATCCACATCGGCCTAGAGGAGATACGCCTAACT
GCGCGGATTACCCAAGAGTTTCTTTTTGCTGTGTTTTCGGCCTAGGAACG
TGTACGGAGGGTTTGATATCTACATTTTCTATTTTTTCAGGACAACAAGT
TGGAAGGCACCAACGACCAACGATGGATATCGACTAGATTTTTCAATGGC
TCGATCGAGTGGAATTCGTTGTTTTTCTCACGGGAGGTCACGTCAGCACG
TTCACGTTGGTACTTTGTTCCGAAGGTTGCAGGATACCCCGCAGAGCTAT
CCATCCCTTGTATTGCTGTCCTCTGGACATGGACTTTGGGTATATCGTCT
GTTCAACATCCTACGGGCATCGGTTGACTGGCTCCCGCGGAGATGACTTG
TCAGGGGATCTTTTGCGAGCATAATGGAGGGTGTTTGTGAACCACGCCAT
GAGGTTTGCAGCAATACCGCCCACCATCCACGTTCCGTGCCTAGAAGGTG
GACGTCTTTTCACCTTGTTGCGTACGCCTGAGTCATTGGGGCCGTAGCGT
GAGTGTTTGCTGAAGTAAACACGTGTTCTGCGTGGGATCGTGAGAAAAGT
GGTACCTGATTCTTACAGCTTCGTTTCCGTCCTCTTTCGGCGCGTCACAA
GTCACTGCAGTATTCAGAGGTCGTTTGGCTTGAATTCCGCCTCAAATCGA
GGTTGACGGGCAGCAGCAAATCACAGAGTAAGCGACATGTGGAGTTTGTA
TAGTGCCAGAGTGTACGCATGTTCTCCTTCTTCCGGAGGTGGAAACCAAG
CTGAGTTGAGAGTCAAAAGGGTGTTGGTACGCTCTTCTCCGAGGGTGCAT
CGTGCCGCAGAGGGACACATTATGGGTTATTGTTTTCGTCCTATTTATTA
TGGCGACAGTCCCCACATTTTTCGTGGTGCGATCTGTCCCACGTTGCTCA
GTGTATGTAGAGTACTACAATTTTCAGTGTATTTTTCGTATAACTACGGT
AAACATCGGGACTTTTTTTCCCTTTGCGTTTGCGGTGCGCACTGAATATG
TGTTTTTTTATCGCGAGGAGGGTCCAGCCG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig86:46125..51454+

>mRNA_Ecto-sp6_S_contig86.17714.1 ID=mRNA_Ecto-sp6_S_contig86.17714.1|Name=mRNA_Ecto-sp6_S_contig86.17714.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:46125..51454+ (Ectocarpus species6 EcLAC_371)
ATGTCGGCGCCGTCAGTTGGTAAGGCGTATCCCGAGGTGCACTCTTCCGC
TGCAGTTGCGCCTCCCCCCCCTCCTGCGTACGAGGGTCCTGGCGACGCTC
AGCCCCCCGCTCAAGCGTACCCGGTGCCTGCAGCAACTGCCGCTCCTCCC
CCGTACGAGGGTCCAGTGGTCGACCAGTATCCCGCGCCGGCGTAA
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